Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01024

Experiment: NL-CCM; high oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_01022 and MPMX19_01023 overlap by 4 nucleotidesMPMX19_01023 and MPMX19_01024 overlap by 4 nucleotidesMPMX19_01024 and MPMX19_01025 are separated by 4 nucleotides MPMX19_01022: MPMX19_01022 - hypothetical protein, at 1,060,779 to 1,061,240 _01022 MPMX19_01023: MPMX19_01023 - Bifunctional adenosylcobalamin biosynthesis protein CobP, at 1,061,237 to 1,061,776 _01023 MPMX19_01024: MPMX19_01024 - Corrinoid adenosyltransferase, at 1,061,773 to 1,062,396 _01024 MPMX19_01025: MPMX19_01025 - Cobyric acid synthase, at 1,062,401 to 1,063,879 _01025 Position (kb) 1061 1062 1063Strain fitness (log2 ratio) -3 -2 -1 0 1at 1060.839 kb on + strand, within MPMX19_01022at 1060.995 kb on + strand, within MPMX19_01022at 1060.995 kb on + strand, within MPMX19_01022at 1060.995 kb on + strand, within MPMX19_01022at 1060.995 kb on + strand, within MPMX19_01022at 1060.995 kb on + strand, within MPMX19_01022at 1060.995 kb on + strand, within MPMX19_01022at 1060.995 kb on + strand, within MPMX19_01022at 1060.995 kb on + strand, within MPMX19_01022at 1060.995 kb on + strand, within MPMX19_01022at 1060.995 kb on + strand, within MPMX19_01022at 1060.995 kb on + strand, within MPMX19_01022at 1060.995 kb on + strand, within MPMX19_01022at 1060.995 kb on + strand, within MPMX19_01022at 1060.995 kb on + strand, within MPMX19_01022at 1060.995 kb on + strand, within MPMX19_01022at 1061.130 kb on + strand, within MPMX19_01022at 1061.130 kb on + strand, within MPMX19_01022at 1061.130 kb on + strand, within MPMX19_01022at 1061.130 kb on + strand, within MPMX19_01022at 1061.130 kb on + strand, within MPMX19_01022at 1061.130 kb on + strand, within MPMX19_01022at 1061.130 kb on + strand, within MPMX19_01022at 1061.130 kb on + strand, within MPMX19_01022at 1061.172 kb on + strand, within MPMX19_01022at 1061.172 kb on + strand, within MPMX19_01022at 1061.208 kb on + strandat 1061.208 kb on + strandat 1061.772 kb on + strandat 1061.772 kb on + strandat 1061.772 kb on + strandat 1061.772 kb on + strandat 1061.772 kb on + strandat 1061.772 kb on + strandat 1061.772 kb on + strandat 1061.772 kb on + strandat 1061.772 kb on + strandat 1061.772 kb on + strandat 1061.772 kb on + strandat 1061.772 kb on + strandat 1061.772 kb on + strandat 1061.772 kb on + strandat 1062.417 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; high oxygen
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1,060,839 + MPMX19_01022 0.13 +1.1
1,060,995 + MPMX19_01022 0.47 -0.1
1,060,995 + MPMX19_01022 0.47 -0.1
1,060,995 + MPMX19_01022 0.47 -0.5
1,060,995 + MPMX19_01022 0.47 +1.0
1,060,995 + MPMX19_01022 0.47 -0.4
1,060,995 + MPMX19_01022 0.47 -0.2
1,060,995 + MPMX19_01022 0.47 -1.5
1,060,995 + MPMX19_01022 0.47 -0.5
1,060,995 + MPMX19_01022 0.47 +0.6
1,060,995 + MPMX19_01022 0.47 -0.4
1,060,995 + MPMX19_01022 0.47 -0.1
1,060,995 + MPMX19_01022 0.47 -1.5
1,060,995 + MPMX19_01022 0.47 +0.7
1,060,995 + MPMX19_01022 0.47 -0.8
1,060,995 + MPMX19_01022 0.47 +0.3
1,061,130 + MPMX19_01022 0.76 +1.2
1,061,130 + MPMX19_01022 0.76 +1.7
1,061,130 + MPMX19_01022 0.76 +0.2
1,061,130 + MPMX19_01022 0.76 -0.1
1,061,130 + MPMX19_01022 0.76 -0.6
1,061,130 + MPMX19_01022 0.76 -0.4
1,061,130 + MPMX19_01022 0.76 -0.6
1,061,130 + MPMX19_01022 0.76 +0.3
1,061,172 + MPMX19_01022 0.85 -0.1
1,061,172 + MPMX19_01022 0.85 -0.0
1,061,208 + +0.3
1,061,208 + -1.3
1,061,772 + +1.5
1,061,772 + +0.9
1,061,772 + -0.4
1,061,772 + +0.3
1,061,772 + -0.5
1,061,772 + -0.3
1,061,772 + -0.9
1,061,772 + -0.8
1,061,772 + -0.2
1,061,772 + +0.1
1,061,772 + +0.7
1,061,772 + -3.3
1,061,772 + +0.3
1,061,772 + -1.2
1,062,417 + +0.4

Or see this region's nucleotide sequence