Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00633

Experiment: NL-CCM; high oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00631 and MPMX19_00632 are separated by 66 nucleotidesMPMX19_00632 and MPMX19_00633 are separated by 196 nucleotidesMPMX19_00633 and MPMX19_00634 are separated by 455 nucleotides MPMX19_00631: MPMX19_00631 - putative MFS-type transporter, at 648,599 to 649,861 _00631 MPMX19_00632: MPMX19_00632 - Intermembrane phospholipid transport system binding protein MlaC, at 649,928 to 650,557 _00632 MPMX19_00633: MPMX19_00633 - Intermembrane phospholipid transport system lipoprotein MlaA, at 650,754 to 651,539 _00633 MPMX19_00634: MPMX19_00634 - 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial, at 651,995 to 652,981 _00634 Position (kb) 650 651 652Strain fitness (log2 ratio) -2 -1 0 1 2at 649.903 kb on + strandat 650.226 kb on + strand, within MPMX19_00632at 650.226 kb on + strand, within MPMX19_00632at 650.226 kb on + strand, within MPMX19_00632at 650.226 kb on + strand, within MPMX19_00632at 650.227 kb on - strand, within MPMX19_00632at 650.227 kb on - strand, within MPMX19_00632at 650.227 kb on - strand, within MPMX19_00632at 650.262 kb on + strand, within MPMX19_00632at 650.325 kb on + strand, within MPMX19_00632at 650.325 kb on + strand, within MPMX19_00632at 650.325 kb on + strand, within MPMX19_00632at 650.325 kb on + strand, within MPMX19_00632at 650.325 kb on + strand, within MPMX19_00632at 650.325 kb on + strand, within MPMX19_00632at 650.326 kb on - strand, within MPMX19_00632at 650.326 kb on - strand, within MPMX19_00632at 650.346 kb on + strand, within MPMX19_00632at 650.347 kb on - strand, within MPMX19_00632at 650.347 kb on - strand, within MPMX19_00632at 650.723 kb on + strandat 650.723 kb on + strandat 650.723 kb on + strandat 650.723 kb on + strandat 650.724 kb on - strandat 650.724 kb on - strandat 650.724 kb on - strandat 650.724 kb on - strandat 650.724 kb on - strandat 650.724 kb on - strandat 650.799 kb on - strandat 650.799 kb on - strandat 650.843 kb on - strand, within MPMX19_00633at 650.863 kb on + strand, within MPMX19_00633at 650.950 kb on + strand, within MPMX19_00633at 650.950 kb on + strand, within MPMX19_00633at 650.950 kb on + strand, within MPMX19_00633at 650.950 kb on + strand, within MPMX19_00633at 650.950 kb on + strand, within MPMX19_00633at 650.951 kb on - strand, within MPMX19_00633at 650.951 kb on - strand, within MPMX19_00633at 650.951 kb on - strand, within MPMX19_00633at 650.978 kb on - strand, within MPMX19_00633at 650.978 kb on - strand, within MPMX19_00633at 651.070 kb on + strand, within MPMX19_00633at 651.071 kb on - strand, within MPMX19_00633at 651.253 kb on + strand, within MPMX19_00633at 651.253 kb on + strand, within MPMX19_00633at 651.253 kb on + strand, within MPMX19_00633at 651.254 kb on - strand, within MPMX19_00633at 651.254 kb on - strand, within MPMX19_00633at 651.254 kb on - strand, within MPMX19_00633at 651.254 kb on - strand, within MPMX19_00633at 651.254 kb on - strand, within MPMX19_00633at 651.325 kb on + strand, within MPMX19_00633at 651.325 kb on + strand, within MPMX19_00633at 651.325 kb on + strand, within MPMX19_00633at 651.325 kb on + strand, within MPMX19_00633at 651.325 kb on + strand, within MPMX19_00633at 651.325 kb on + strand, within MPMX19_00633at 651.325 kb on + strand, within MPMX19_00633at 651.326 kb on - strand, within MPMX19_00633at 651.326 kb on - strand, within MPMX19_00633at 651.326 kb on - strand, within MPMX19_00633at 651.326 kb on - strand, within MPMX19_00633at 651.326 kb on - strand, within MPMX19_00633at 651.326 kb on - strand, within MPMX19_00633at 651.326 kb on - strand, within MPMX19_00633at 651.326 kb on - strand, within MPMX19_00633at 651.326 kb on - strand, within MPMX19_00633at 651.360 kb on + strand, within MPMX19_00633at 651.361 kb on - strand, within MPMX19_00633at 651.421 kb on + strand, within MPMX19_00633at 651.554 kb on + strandat 651.554 kb on + strandat 651.554 kb on + strandat 651.554 kb on + strandat 651.554 kb on + strandat 651.554 kb on + strandat 651.555 kb on - strandat 651.555 kb on - strandat 651.555 kb on - strandat 651.555 kb on - strandat 651.555 kb on - strandat 651.555 kb on - strandat 651.555 kb on - strandat 651.555 kb on - strandat 651.555 kb on - strandat 651.676 kb on - strandat 651.676 kb on - strandat 651.676 kb on - strandat 651.704 kb on + strandat 651.704 kb on + strandat 651.704 kb on + strandat 651.704 kb on + strandat 651.704 kb on + strandat 651.704 kb on + strandat 651.704 kb on + strandat 651.704 kb on + strandat 651.704 kb on + strandat 651.704 kb on + strandat 651.704 kb on + strandat 651.705 kb on - strandat 651.705 kb on - strandat 651.705 kb on - strandat 651.705 kb on - strandat 651.705 kb on - strandat 651.705 kb on - strandat 651.705 kb on - strandat 651.705 kb on - strandat 651.897 kb on - strandat 651.897 kb on - strandat 651.906 kb on - strandat 651.906 kb on - strandat 651.911 kb on + strandat 651.911 kb on + strandat 651.912 kb on - strandat 651.917 kb on + strandat 651.917 kb on + strandat 651.917 kb on + strandat 651.917 kb on + strandat 651.918 kb on - strandat 651.918 kb on - strandat 651.918 kb on - strandat 651.918 kb on - strandat 651.918 kb on - strandat 651.918 kb on - strandat 651.918 kb on - strandat 651.919 kb on + strandat 651.920 kb on - strandat 651.920 kb on - strandat 652.196 kb on + strand, within MPMX19_00634at 652.196 kb on + strand, within MPMX19_00634at 652.197 kb on - strand, within MPMX19_00634at 652.197 kb on - strand, within MPMX19_00634at 652.337 kb on + strand, within MPMX19_00634at 652.337 kb on + strand, within MPMX19_00634at 652.337 kb on + strand, within MPMX19_00634at 652.337 kb on + strand, within MPMX19_00634at 652.337 kb on + strand, within MPMX19_00634at 652.337 kb on + strand, within MPMX19_00634at 652.338 kb on - strand, within MPMX19_00634at 652.338 kb on - strand, within MPMX19_00634at 652.338 kb on - strand, within MPMX19_00634at 652.338 kb on - strand, within MPMX19_00634at 652.338 kb on - strand, within MPMX19_00634at 652.338 kb on - strand, within MPMX19_00634

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; high oxygen
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649,903 + -0.5
650,226 + MPMX19_00632 0.47 +1.1
650,226 + MPMX19_00632 0.47 +0.1
650,226 + MPMX19_00632 0.47 -0.9
650,226 + MPMX19_00632 0.47 -0.7
650,227 - MPMX19_00632 0.47 -2.1
650,227 - MPMX19_00632 0.47 -0.2
650,227 - MPMX19_00632 0.47 -0.3
650,262 + MPMX19_00632 0.53 +0.4
650,325 + MPMX19_00632 0.63 -1.4
650,325 + MPMX19_00632 0.63 -0.4
650,325 + MPMX19_00632 0.63 +0.9
650,325 + MPMX19_00632 0.63 +0.1
650,325 + MPMX19_00632 0.63 -1.7
650,325 + MPMX19_00632 0.63 -1.2
650,326 - MPMX19_00632 0.63 +1.3
650,326 - MPMX19_00632 0.63 -0.2
650,346 + MPMX19_00632 0.66 +0.4
650,347 - MPMX19_00632 0.67 -0.3
650,347 - MPMX19_00632 0.67 -0.2
650,723 + -1.1
650,723 + -0.4
650,723 + -0.3
650,723 + +0.0
650,724 - +0.7
650,724 - -1.7
650,724 - -0.1
650,724 - -0.3
650,724 - -0.7
650,724 - +0.1
650,799 - +1.3
650,799 - -1.1
650,843 - MPMX19_00633 0.11 -1.0
650,863 + MPMX19_00633 0.14 +0.3
650,950 + MPMX19_00633 0.25 -2.1
650,950 + MPMX19_00633 0.25 +2.1
650,950 + MPMX19_00633 0.25 +0.1
650,950 + MPMX19_00633 0.25 -0.4
650,950 + MPMX19_00633 0.25 -1.2
650,951 - MPMX19_00633 0.25 -0.6
650,951 - MPMX19_00633 0.25 +0.1
650,951 - MPMX19_00633 0.25 -0.5
650,978 - MPMX19_00633 0.28 -1.5
650,978 - MPMX19_00633 0.28 -1.0
651,070 + MPMX19_00633 0.40 -2.2
651,071 - MPMX19_00633 0.40 -0.6
651,253 + MPMX19_00633 0.63 -1.1
651,253 + MPMX19_00633 0.63 -1.1
651,253 + MPMX19_00633 0.63 -2.4
651,254 - MPMX19_00633 0.64 -1.9
651,254 - MPMX19_00633 0.64 -0.9
651,254 - MPMX19_00633 0.64 -0.1
651,254 - MPMX19_00633 0.64 +0.2
651,254 - MPMX19_00633 0.64 -0.1
651,325 + MPMX19_00633 0.73 -0.0
651,325 + MPMX19_00633 0.73 -0.8
651,325 + MPMX19_00633 0.73 -0.5
651,325 + MPMX19_00633 0.73 -0.1
651,325 + MPMX19_00633 0.73 -0.8
651,325 + MPMX19_00633 0.73 -0.8
651,325 + MPMX19_00633 0.73 -0.1
651,326 - MPMX19_00633 0.73 -0.8
651,326 - MPMX19_00633 0.73 -1.6
651,326 - MPMX19_00633 0.73 +0.9
651,326 - MPMX19_00633 0.73 +0.6
651,326 - MPMX19_00633 0.73 -1.1
651,326 - MPMX19_00633 0.73 -0.7
651,326 - MPMX19_00633 0.73 -2.2
651,326 - MPMX19_00633 0.73 +0.2
651,326 - MPMX19_00633 0.73 -1.5
651,360 + MPMX19_00633 0.77 -1.0
651,361 - MPMX19_00633 0.77 +0.4
651,421 + MPMX19_00633 0.85 -2.1
651,554 + -1.3
651,554 + -1.3
651,554 + -0.6
651,554 + -0.4
651,554 + -0.9
651,554 + -1.1
651,555 - +0.4
651,555 - +0.5
651,555 - -0.6
651,555 - +0.3
651,555 - -0.3
651,555 - -1.8
651,555 - -0.1
651,555 - -1.3
651,555 - -0.4
651,676 - -0.9
651,676 - -0.5
651,676 - -0.1
651,704 + -1.3
651,704 + -0.2
651,704 + +0.6
651,704 + -0.3
651,704 + -0.2
651,704 + +0.5
651,704 + -1.5
651,704 + +0.8
651,704 + -0.9
651,704 + +0.1
651,704 + -0.8
651,705 - -0.2
651,705 - -0.4
651,705 - -0.2
651,705 - +0.2
651,705 - -0.5
651,705 - -0.7
651,705 - -0.5
651,705 - -0.5
651,897 - +0.9
651,897 - -1.1
651,906 - -0.6
651,906 - -0.8
651,911 + -0.8
651,911 + +0.3
651,912 - +0.5
651,917 + +0.8
651,917 + +0.6
651,917 + -0.2
651,917 + -0.8
651,918 - +0.2
651,918 - -0.6
651,918 - +0.2
651,918 - +0.2
651,918 - +0.0
651,918 - +0.1
651,918 - -1.4
651,919 + -1.0
651,920 - -1.1
651,920 - -0.9
652,196 + MPMX19_00634 0.20 -0.9
652,196 + MPMX19_00634 0.20 -1.1
652,197 - MPMX19_00634 0.20 -0.5
652,197 - MPMX19_00634 0.20 -0.2
652,337 + MPMX19_00634 0.35 -0.7
652,337 + MPMX19_00634 0.35 -1.1
652,337 + MPMX19_00634 0.35 -0.8
652,337 + MPMX19_00634 0.35 +0.5
652,337 + MPMX19_00634 0.35 -0.9
652,337 + MPMX19_00634 0.35 +0.9
652,338 - MPMX19_00634 0.35 +0.9
652,338 - MPMX19_00634 0.35 -2.3
652,338 - MPMX19_00634 0.35 -0.1
652,338 - MPMX19_00634 0.35 +0.9
652,338 - MPMX19_00634 0.35 +0.1
652,338 - MPMX19_00634 0.35 +0.3

Or see this region's nucleotide sequence