Experiment: NL-CCM; high oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00026 and MPMX19_00027 are separated by 10 nucleotides MPMX19_00027 and MPMX19_00028 are separated by 274 nucleotides MPMX19_00028 and MPMX19_00029 are separated by 62 nucleotides
MPMX19_00026: MPMX19_00026 - hypothetical protein, at 31,368 to 32,336
_00026
MPMX19_00027: MPMX19_00027 - hypothetical protein, at 32,347 to 33,561
_00027
MPMX19_00028: MPMX19_00028 - hypothetical protein, at 33,836 to 34,153
_00028
MPMX19_00029: MPMX19_00029 - Phosphoglycolate phosphatase, at 34,216 to 35,094
_00029
Position (kb) 32
33
34 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 31.405 kb on + strand at 31.405 kb on + strand at 31.405 kb on + strand at 31.405 kb on + strand at 31.405 kb on + strand at 31.406 kb on - strand at 31.406 kb on - strand at 31.406 kb on - strand at 31.406 kb on - strand at 31.406 kb on - strand at 31.406 kb on - strand at 31.438 kb on + strand at 31.438 kb on + strand at 31.438 kb on + strand at 31.438 kb on + strand at 31.439 kb on - strand at 31.439 kb on - strand at 31.439 kb on - strand at 31.439 kb on - strand at 31.439 kb on - strand at 31.439 kb on - strand at 31.439 kb on - strand at 31.439 kb on - strand at 31.439 kb on - strand at 31.439 kb on - strand at 31.439 kb on - strand at 31.645 kb on + strand, within MPMX19_00026 at 31.646 kb on - strand, within MPMX19_00026 at 31.646 kb on - strand, within MPMX19_00026 at 31.714 kb on + strand, within MPMX19_00026 at 31.714 kb on + strand, within MPMX19_00026 at 31.714 kb on + strand, within MPMX19_00026 at 31.714 kb on + strand, within MPMX19_00026 at 31.714 kb on + strand, within MPMX19_00026 at 31.714 kb on + strand, within MPMX19_00026 at 31.714 kb on + strand, within MPMX19_00026 at 31.715 kb on - strand, within MPMX19_00026 at 31.715 kb on - strand, within MPMX19_00026 at 31.715 kb on - strand, within MPMX19_00026 at 31.715 kb on - strand, within MPMX19_00026 at 31.715 kb on - strand, within MPMX19_00026 at 31.715 kb on - strand, within MPMX19_00026 at 31.715 kb on - strand, within MPMX19_00026 at 31.729 kb on + strand, within MPMX19_00026 at 31.729 kb on + strand, within MPMX19_00026 at 31.729 kb on + strand, within MPMX19_00026 at 31.729 kb on + strand, within MPMX19_00026 at 31.729 kb on + strand, within MPMX19_00026 at 31.729 kb on + strand, within MPMX19_00026 at 31.729 kb on + strand, within MPMX19_00026 at 31.729 kb on + strand, within MPMX19_00026 at 31.730 kb on - strand, within MPMX19_00026 at 31.730 kb on - strand, within MPMX19_00026 at 31.730 kb on - strand, within MPMX19_00026 at 31.730 kb on - strand, within MPMX19_00026 at 31.730 kb on - strand, within MPMX19_00026 at 31.730 kb on - strand, within MPMX19_00026 at 31.730 kb on - strand, within MPMX19_00026 at 31.730 kb on - strand, within MPMX19_00026 at 31.858 kb on + strand, within MPMX19_00026 at 31.858 kb on + strand, within MPMX19_00026 at 31.858 kb on + strand, within MPMX19_00026 at 31.858 kb on + strand, within MPMX19_00026 at 31.858 kb on + strand, within MPMX19_00026 at 31.858 kb on + strand, within MPMX19_00026 at 31.858 kb on + strand, within MPMX19_00026 at 31.858 kb on + strand, within MPMX19_00026 at 31.858 kb on + strand, within MPMX19_00026 at 31.858 kb on + strand, within MPMX19_00026 at 31.858 kb on + strand, within MPMX19_00026 at 31.858 kb on + strand, within MPMX19_00026 at 31.859 kb on - strand, within MPMX19_00026 at 31.859 kb on - strand, within MPMX19_00026 at 31.859 kb on - strand, within MPMX19_00026 at 31.859 kb on - strand, within MPMX19_00026 at 31.859 kb on - strand, within MPMX19_00026 at 31.859 kb on - strand, within MPMX19_00026 at 31.859 kb on - strand, within MPMX19_00026 at 31.859 kb on - strand, within MPMX19_00026 at 31.859 kb on - strand, within MPMX19_00026 at 32.517 kb on - strand, within MPMX19_00027 at 32.517 kb on - strand, within MPMX19_00027 at 32.517 kb on - strand, within MPMX19_00027 at 32.639 kb on + strand, within MPMX19_00027 at 32.639 kb on + strand, within MPMX19_00027 at 32.639 kb on + strand, within MPMX19_00027 at 32.639 kb on + strand, within MPMX19_00027 at 32.639 kb on + strand, within MPMX19_00027 at 32.639 kb on + strand, within MPMX19_00027 at 32.639 kb on + strand, within MPMX19_00027 at 32.639 kb on + strand, within MPMX19_00027 at 32.640 kb on - strand, within MPMX19_00027 at 32.640 kb on - strand, within MPMX19_00027 at 32.640 kb on - strand, within MPMX19_00027 at 32.640 kb on - strand, within MPMX19_00027 at 32.640 kb on - strand, within MPMX19_00027 at 33.103 kb on + strand, within MPMX19_00027 at 33.103 kb on + strand, within MPMX19_00027 at 33.103 kb on + strand, within MPMX19_00027 at 33.103 kb on + strand, within MPMX19_00027 at 33.103 kb on + strand, within MPMX19_00027 at 33.103 kb on + strand, within MPMX19_00027 at 33.104 kb on - strand, within MPMX19_00027 at 33.104 kb on - strand, within MPMX19_00027 at 33.104 kb on - strand, within MPMX19_00027 at 33.104 kb on - strand, within MPMX19_00027 at 33.104 kb on - strand, within MPMX19_00027 at 33.221 kb on + strand, within MPMX19_00027 at 33.221 kb on + strand, within MPMX19_00027 at 33.221 kb on + strand, within MPMX19_00027 at 33.221 kb on + strand, within MPMX19_00027 at 33.222 kb on - strand, within MPMX19_00027 at 33.222 kb on - strand, within MPMX19_00027 at 33.222 kb on - strand, within MPMX19_00027 at 33.222 kb on - strand, within MPMX19_00027 at 33.222 kb on - strand, within MPMX19_00027 at 33.222 kb on - strand, within MPMX19_00027 at 33.222 kb on - strand, within MPMX19_00027 at 33.222 kb on - strand, within MPMX19_00027 at 33.358 kb on - strand, within MPMX19_00027 at 33.358 kb on - strand, within MPMX19_00027 at 33.358 kb on - strand, within MPMX19_00027 at 33.358 kb on - strand, within MPMX19_00027 at 33.614 kb on + strand at 33.614 kb on + strand at 33.614 kb on + strand at 33.615 kb on - strand at 33.615 kb on - strand at 33.615 kb on - strand at 33.615 kb on - strand at 33.615 kb on - strand at 33.615 kb on - strand at 33.615 kb on - strand at 33.615 kb on - strand at 33.615 kb on - strand at 33.615 kb on - strand at 33.615 kb on - strand at 33.615 kb on - strand at 33.615 kb on - strand at 33.615 kb on - strand at 33.615 kb on - strand at 33.615 kb on - strand at 33.616 kb on + strand at 33.617 kb on - strand at 33.617 kb on - strand at 33.617 kb on - strand at 33.617 kb on - strand at 33.617 kb on - strand at 33.617 kb on - strand at 33.617 kb on - strand at 33.617 kb on - strand at 33.760 kb on + strand at 33.761 kb on - strand at 33.761 kb on - strand at 33.761 kb on - strand at 33.761 kb on - strand at 33.761 kb on - strand at 33.761 kb on - strand at 33.761 kb on - strand at 33.780 kb on + strand at 33.780 kb on + strand at 33.780 kb on + strand at 33.780 kb on + strand at 33.780 kb on + strand at 33.780 kb on + strand at 33.780 kb on + strand at 33.780 kb on + strand at 33.780 kb on + strand at 33.780 kb on + strand at 33.781 kb on - strand at 33.781 kb on - strand at 33.781 kb on - strand at 33.781 kb on - strand at 33.781 kb on - strand at 33.856 kb on + strand at 33.856 kb on + strand at 33.856 kb on + strand at 33.856 kb on + strand at 33.857 kb on - strand at 33.857 kb on - strand at 33.857 kb on - strand at 33.857 kb on - strand at 33.915 kb on + strand, within MPMX19_00028 at 33.915 kb on + strand, within MPMX19_00028 at 33.916 kb on - strand, within MPMX19_00028 at 33.916 kb on - strand, within MPMX19_00028 at 33.929 kb on + strand, within MPMX19_00028 at 33.929 kb on + strand, within MPMX19_00028 at 33.929 kb on + strand, within MPMX19_00028 at 33.930 kb on - strand, within MPMX19_00028 at 33.930 kb on - strand, within MPMX19_00028 at 33.930 kb on - strand, within MPMX19_00028 at 33.930 kb on - strand, within MPMX19_00028 at 33.930 kb on - strand, within MPMX19_00028 at 33.930 kb on - strand, within MPMX19_00028 at 33.930 kb on - strand, within MPMX19_00028 at 33.931 kb on + strand, within MPMX19_00028 at 33.931 kb on + strand, within MPMX19_00028 at 33.931 kb on + strand, within MPMX19_00028 at 33.931 kb on + strand, within MPMX19_00028 at 33.931 kb on + strand, within MPMX19_00028 at 33.931 kb on + strand, within MPMX19_00028 at 33.931 kb on + strand, within MPMX19_00028 at 33.932 kb on - strand, within MPMX19_00028 at 33.932 kb on - strand, within MPMX19_00028 at 33.932 kb on - strand, within MPMX19_00028 at 33.932 kb on - strand, within MPMX19_00028 at 33.932 kb on - strand, within MPMX19_00028 at 34.058 kb on + strand, within MPMX19_00028 at 34.058 kb on + strand, within MPMX19_00028 at 34.058 kb on + strand, within MPMX19_00028 at 34.058 kb on + strand, within MPMX19_00028 at 34.058 kb on + strand, within MPMX19_00028 at 34.058 kb on + strand, within MPMX19_00028 at 34.058 kb on + strand, within MPMX19_00028 at 34.058 kb on + strand, within MPMX19_00028 at 34.058 kb on + strand, within MPMX19_00028 at 34.058 kb on + strand, within MPMX19_00028 at 34.058 kb on + strand, within MPMX19_00028 at 34.059 kb on - strand, within MPMX19_00028 at 34.059 kb on - strand, within MPMX19_00028 at 34.059 kb on - strand, within MPMX19_00028 at 34.059 kb on - strand, within MPMX19_00028 at 34.059 kb on - strand, within MPMX19_00028 at 34.059 kb on - strand, within MPMX19_00028 at 34.059 kb on - strand, within MPMX19_00028 at 34.061 kb on + strand, within MPMX19_00028 at 34.164 kb on + strand at 34.164 kb on + strand at 34.164 kb on + strand at 34.164 kb on + strand at 34.164 kb on + strand at 34.165 kb on - strand at 34.165 kb on - strand at 34.165 kb on - strand at 34.165 kb on - strand at 34.165 kb on - strand at 34.165 kb on - strand at 34.165 kb on - strand at 34.165 kb on - strand at 34.165 kb on - strand at 34.166 kb on + strand at 34.167 kb on - strand at 34.194 kb on + strand at 34.194 kb on + strand at 34.194 kb on + strand at 34.195 kb on - strand at 34.195 kb on - strand at 34.195 kb on - strand at 34.195 kb on - strand at 34.195 kb on - strand at 34.195 kb on - strand at 34.195 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; high oxygen remove 31,405 + -2.1 31,405 + -0.0 31,405 + -1.5 31,405 + +0.0 31,405 + -0.2 31,406 - -2.9 31,406 - +0.2 31,406 - +0.5 31,406 - -0.6 31,406 - +0.4 31,406 - -1.3 31,438 + +0.2 31,438 + -0.0 31,438 + -0.5 31,438 + -0.6 31,439 - +0.0 31,439 - -0.2 31,439 - -0.1 31,439 - +1.0 31,439 - -0.2 31,439 - -0.7 31,439 - -0.6 31,439 - -1.8 31,439 - +1.5 31,439 - -1.2 31,439 - +0.8 31,645 + MPMX19_00026 0.29 +0.2 31,646 - MPMX19_00026 0.29 -0.1 31,646 - MPMX19_00026 0.29 +0.7 31,714 + MPMX19_00026 0.36 -1.2 31,714 + MPMX19_00026 0.36 -0.5 31,714 + MPMX19_00026 0.36 -0.7 31,714 + MPMX19_00026 0.36 -1.0 31,714 + MPMX19_00026 0.36 +0.1 31,714 + MPMX19_00026 0.36 -0.4 31,714 + MPMX19_00026 0.36 -0.2 31,715 - MPMX19_00026 0.36 -0.2 31,715 - MPMX19_00026 0.36 -0.7 31,715 - MPMX19_00026 0.36 -1.0 31,715 - MPMX19_00026 0.36 +0.0 31,715 - MPMX19_00026 0.36 +1.0 31,715 - MPMX19_00026 0.36 +0.0 31,715 - MPMX19_00026 0.36 -1.4 31,729 + MPMX19_00026 0.37 -0.3 31,729 + MPMX19_00026 0.37 -1.1 31,729 + MPMX19_00026 0.37 +0.3 31,729 + MPMX19_00026 0.37 +0.8 31,729 + MPMX19_00026 0.37 -0.6 31,729 + MPMX19_00026 0.37 -0.2 31,729 + MPMX19_00026 0.37 +0.4 31,729 + MPMX19_00026 0.37 +0.5 31,730 - MPMX19_00026 0.37 +0.6 31,730 - MPMX19_00026 0.37 +0.0 31,730 - MPMX19_00026 0.37 -0.2 31,730 - MPMX19_00026 0.37 +0.2 31,730 - MPMX19_00026 0.37 -1.5 31,730 - MPMX19_00026 0.37 +0.2 31,730 - MPMX19_00026 0.37 +0.3 31,730 - MPMX19_00026 0.37 +0.3 31,858 + MPMX19_00026 0.51 -0.8 31,858 + MPMX19_00026 0.51 +1.0 31,858 + MPMX19_00026 0.51 -1.2 31,858 + MPMX19_00026 0.51 +0.5 31,858 + MPMX19_00026 0.51 +1.3 31,858 + MPMX19_00026 0.51 +0.3 31,858 + MPMX19_00026 0.51 -0.6 31,858 + MPMX19_00026 0.51 -1.5 31,858 + MPMX19_00026 0.51 +0.3 31,858 + MPMX19_00026 0.51 -1.6 31,858 + MPMX19_00026 0.51 +0.1 31,858 + MPMX19_00026 0.51 -0.4 31,859 - MPMX19_00026 0.51 -1.7 31,859 - MPMX19_00026 0.51 +0.6 31,859 - MPMX19_00026 0.51 -0.2 31,859 - MPMX19_00026 0.51 -0.1 31,859 - MPMX19_00026 0.51 +1.3 31,859 - MPMX19_00026 0.51 +0.5 31,859 - MPMX19_00026 0.51 -1.0 31,859 - MPMX19_00026 0.51 -0.4 31,859 - MPMX19_00026 0.51 +0.0 32,517 - MPMX19_00027 0.14 -0.7 32,517 - MPMX19_00027 0.14 -0.2 32,517 - MPMX19_00027 0.14 -2.1 32,639 + MPMX19_00027 0.24 -1.4 32,639 + MPMX19_00027 0.24 -0.1 32,639 + MPMX19_00027 0.24 -0.1 32,639 + MPMX19_00027 0.24 -0.1 32,639 + MPMX19_00027 0.24 +0.4 32,639 + MPMX19_00027 0.24 -2.1 32,639 + MPMX19_00027 0.24 +0.6 32,639 + MPMX19_00027 0.24 -1.2 32,640 - MPMX19_00027 0.24 -0.5 32,640 - MPMX19_00027 0.24 +0.8 32,640 - MPMX19_00027 0.24 -0.7 32,640 - MPMX19_00027 0.24 -0.2 32,640 - MPMX19_00027 0.24 -0.4 33,103 + MPMX19_00027 0.62 -0.6 33,103 + MPMX19_00027 0.62 -1.5 33,103 + MPMX19_00027 0.62 +0.9 33,103 + MPMX19_00027 0.62 -1.0 33,103 + MPMX19_00027 0.62 -0.7 33,103 + MPMX19_00027 0.62 -1.1 33,104 - MPMX19_00027 0.62 +0.6 33,104 - MPMX19_00027 0.62 -1.2 33,104 - MPMX19_00027 0.62 -0.2 33,104 - MPMX19_00027 0.62 +0.2 33,104 - MPMX19_00027 0.62 +0.3 33,221 + MPMX19_00027 0.72 +0.1 33,221 + MPMX19_00027 0.72 -0.7 33,221 + MPMX19_00027 0.72 -1.0 33,221 + MPMX19_00027 0.72 +0.5 33,222 - MPMX19_00027 0.72 -0.5 33,222 - MPMX19_00027 0.72 -1.1 33,222 - MPMX19_00027 0.72 -1.2 33,222 - MPMX19_00027 0.72 -0.5 33,222 - MPMX19_00027 0.72 -2.8 33,222 - MPMX19_00027 0.72 -1.2 33,222 - MPMX19_00027 0.72 -0.8 33,222 - MPMX19_00027 0.72 -0.9 33,358 - MPMX19_00027 0.83 -0.5 33,358 - MPMX19_00027 0.83 -0.1 33,358 - MPMX19_00027 0.83 -1.2 33,358 - MPMX19_00027 0.83 +0.5 33,614 + +0.0 33,614 + +0.4 33,614 + +0.5 33,615 - +0.4 33,615 - +1.1 33,615 - -0.9 33,615 - -1.2 33,615 - +0.7 33,615 - -1.0 33,615 - +0.1 33,615 - +2.0 33,615 - -1.5 33,615 - +0.6 33,615 - -0.4 33,615 - +0.7 33,615 - -1.6 33,615 - -0.3 33,615 - +0.6 33,615 - +0.4 33,616 + +0.2 33,617 - -0.2 33,617 - -1.0 33,617 - +0.5 33,617 - +1.2 33,617 - +0.4 33,617 - +0.5 33,617 - -0.4 33,617 - -0.8 33,760 + -1.1 33,761 - +0.5 33,761 - +0.6 33,761 - -1.4 33,761 - +0.0 33,761 - -0.0 33,761 - -0.3 33,761 - -0.5 33,780 + -0.5 33,780 + -0.5 33,780 + -0.6 33,780 + -0.7 33,780 + -0.1 33,780 + -0.4 33,780 + +0.5 33,780 + -2.7 33,780 + -0.1 33,780 + -0.8 33,781 - +0.6 33,781 - +1.2 33,781 - -2.1 33,781 - -0.5 33,781 - +1.2 33,856 + +0.3 33,856 + -0.2 33,856 + +1.3 33,856 + -1.0 33,857 - +1.8 33,857 - +1.0 33,857 - +0.7 33,857 - -0.1 33,915 + MPMX19_00028 0.25 -0.4 33,915 + MPMX19_00028 0.25 +0.3 33,916 - MPMX19_00028 0.25 -0.2 33,916 - MPMX19_00028 0.25 -0.6 33,929 + MPMX19_00028 0.29 +0.3 33,929 + MPMX19_00028 0.29 -0.5 33,929 + MPMX19_00028 0.29 -0.4 33,930 - MPMX19_00028 0.30 +0.2 33,930 - MPMX19_00028 0.30 -1.1 33,930 - MPMX19_00028 0.30 -1.0 33,930 - MPMX19_00028 0.30 +0.6 33,930 - MPMX19_00028 0.30 -0.8 33,930 - MPMX19_00028 0.30 +1.3 33,930 - MPMX19_00028 0.30 -1.2 33,931 + MPMX19_00028 0.30 -0.7 33,931 + MPMX19_00028 0.30 -1.2 33,931 + MPMX19_00028 0.30 +0.0 33,931 + MPMX19_00028 0.30 -0.7 33,931 + MPMX19_00028 0.30 -1.1 33,931 + MPMX19_00028 0.30 -1.5 33,931 + MPMX19_00028 0.30 +0.5 33,932 - MPMX19_00028 0.30 -0.4 33,932 - MPMX19_00028 0.30 -0.1 33,932 - MPMX19_00028 0.30 +0.3 33,932 - MPMX19_00028 0.30 -0.3 33,932 - MPMX19_00028 0.30 -0.5 34,058 + MPMX19_00028 0.70 -0.3 34,058 + MPMX19_00028 0.70 -1.4 34,058 + MPMX19_00028 0.70 +0.0 34,058 + MPMX19_00028 0.70 +0.4 34,058 + MPMX19_00028 0.70 -1.6 34,058 + MPMX19_00028 0.70 +0.6 34,058 + MPMX19_00028 0.70 +0.0 34,058 + MPMX19_00028 0.70 -0.8 34,058 + MPMX19_00028 0.70 +0.5 34,058 + MPMX19_00028 0.70 -1.8 34,058 + MPMX19_00028 0.70 +0.1 34,059 - MPMX19_00028 0.70 -1.3 34,059 - MPMX19_00028 0.70 +1.3 34,059 - MPMX19_00028 0.70 -0.1 34,059 - MPMX19_00028 0.70 -0.8 34,059 - MPMX19_00028 0.70 +0.0 34,059 - MPMX19_00028 0.70 -0.3 34,059 - MPMX19_00028 0.70 +0.6 34,061 + MPMX19_00028 0.71 -0.7 34,164 + +0.0 34,164 + -0.1 34,164 + +0.3 34,164 + +0.4 34,164 + -0.9 34,165 - -0.7 34,165 - +0.9 34,165 - -0.1 34,165 - -0.9 34,165 - +2.1 34,165 - -1.8 34,165 - -0.8 34,165 - -0.3 34,165 - -1.2 34,166 + -0.5 34,167 - +0.3 34,194 + +0.7 34,194 + -0.2 34,194 + +0.5 34,195 - +0.6 34,195 - -0.8 34,195 - +1.4 34,195 - -0.5 34,195 - +0.6 34,195 - -1.0 34,195 - -1.4
Or see this region's nucleotide sequence