Experiment: R2A_high_K2HPO4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS21355 and ABZR88_RS21360 overlap by 1 nucleotides ABZR88_RS21360 and ABZR88_RS21365 are separated by 21 nucleotides ABZR88_RS21365 and ABZR88_RS21370 overlap by 4 nucleotides ABZR88_RS21370 and ABZR88_RS21375 are separated by 93 nucleotides ABZR88_RS21375 and ABZR88_RS21380 are separated by 58 nucleotides
ABZR88_RS21355: ABZR88_RS21355 - manganese catalase family protein, at 5,141,620 to 5,142,561
_RS21355
ABZR88_RS21360: ABZR88_RS21360 - hypothetical protein, at 5,142,561 to 5,142,722
_RS21360
ABZR88_RS21365: ABZR88_RS21365 - DUF1810 domain-containing protein, at 5,142,744 to 5,143,175
_RS21365
ABZR88_RS21370: ABZR88_RS21370 - hypothetical protein, at 5,143,172 to 5,143,507
_RS21370
ABZR88_RS21375: ABZR88_RS21375 - SDR family oxidoreductase, at 5,143,601 to 5,144,446
_RS21375
ABZR88_RS21380: ABZR88_RS21380 - DUF3175 domain-containing protein, at 5,144,505 to 5,144,777
_RS21380
Position (kb) 5143
5144 Strain fitness (log2 ratio) -1
0
1 at 5142.295 kb on + strand, within ABZR88_RS21355 at 5142.296 kb on - strand, within ABZR88_RS21355 at 5142.297 kb on + strand, within ABZR88_RS21355 at 5142.370 kb on + strand, within ABZR88_RS21355 at 5142.422 kb on + strand, within ABZR88_RS21355 at 5142.541 kb on + strand at 5142.850 kb on - strand, within ABZR88_RS21365 at 5142.850 kb on - strand, within ABZR88_RS21365 at 5142.852 kb on - strand, within ABZR88_RS21365 at 5142.978 kb on - strand, within ABZR88_RS21365 at 5142.988 kb on + strand, within ABZR88_RS21365 at 5142.989 kb on - strand, within ABZR88_RS21365 at 5143.243 kb on - strand, within ABZR88_RS21370 at 5143.468 kb on + strand, within ABZR88_RS21370 at 5143.508 kb on - strand at 5143.508 kb on - strand at 5143.596 kb on + strand at 5143.597 kb on - strand at 5143.671 kb on - strand at 5143.672 kb on + strand at 5143.676 kb on - strand at 5143.933 kb on + strand, within ABZR88_RS21375 at 5143.963 kb on + strand, within ABZR88_RS21375 at 5144.041 kb on + strand, within ABZR88_RS21375
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_high_K2HPO4 remove 5,142,295 + ABZR88_RS21355 0.72 -0.3 5,142,296 - ABZR88_RS21355 0.72 -0.6 5,142,297 + ABZR88_RS21355 0.72 +0.1 5,142,370 + ABZR88_RS21355 0.80 +0.7 5,142,422 + ABZR88_RS21355 0.85 +0.2 5,142,541 + +0.2 5,142,850 - ABZR88_RS21365 0.25 -0.2 5,142,850 - ABZR88_RS21365 0.25 -0.1 5,142,852 - ABZR88_RS21365 0.25 -0.1 5,142,978 - ABZR88_RS21365 0.54 -0.1 5,142,988 + ABZR88_RS21365 0.56 -0.7 5,142,989 - ABZR88_RS21365 0.57 -0.3 5,143,243 - ABZR88_RS21370 0.21 -1.5 5,143,468 + ABZR88_RS21370 0.88 -0.0 5,143,508 - -0.7 5,143,508 - -0.4 5,143,596 + -1.4 5,143,597 - -0.4 5,143,671 - +0.4 5,143,672 + +0.1 5,143,676 - -0.4 5,143,933 + ABZR88_RS21375 0.39 +0.4 5,143,963 + ABZR88_RS21375 0.43 +0.3 5,144,041 + ABZR88_RS21375 0.52 +0.8
Or see this region's nucleotide sequence