Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS20050

Experiment: R2A_high_K2HPO4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS20040 and ABZR88_RS20045 are separated by 129 nucleotidesABZR88_RS20045 and ABZR88_RS20050 are separated by 217 nucleotidesABZR88_RS20050 and ABZR88_RS20055 are separated by 26 nucleotides ABZR88_RS20040: ABZR88_RS20040 - ABC transporter permease, at 4,866,764 to 4,867,990 _RS20040 ABZR88_RS20045: ABZR88_RS20045 - MBL fold metallo-hydrolase, at 4,868,120 to 4,868,758 _RS20045 ABZR88_RS20050: ABZR88_RS20050 - gliding motility lipoprotein GldD, at 4,868,976 to 4,869,536 _RS20050 ABZR88_RS20055: ABZR88_RS20055 - shikimate dehydrogenase, at 4,869,563 to 4,870,363 _RS20055 Position (kb) 4868 4869 4870Strain fitness (log2 ratio) -1 0 1at 4868.252 kb on - strand, within ABZR88_RS20045at 4868.252 kb on - strand, within ABZR88_RS20045at 4868.278 kb on + strand, within ABZR88_RS20045at 4868.295 kb on - strand, within ABZR88_RS20045at 4868.306 kb on + strand, within ABZR88_RS20045at 4868.398 kb on + strand, within ABZR88_RS20045at 4868.399 kb on - strand, within ABZR88_RS20045at 4868.399 kb on - strand, within ABZR88_RS20045at 4868.432 kb on + strand, within ABZR88_RS20045at 4868.615 kb on - strand, within ABZR88_RS20045at 4868.675 kb on - strand, within ABZR88_RS20045at 4868.739 kb on - strandat 4868.783 kb on + strandat 4868.783 kb on + strandat 4868.872 kb on + strandat 4869.008 kb on + strandat 4869.009 kb on - strandat 4869.021 kb on - strandat 4869.115 kb on + strand, within ABZR88_RS20050at 4869.157 kb on + strand, within ABZR88_RS20050at 4869.388 kb on + strand, within ABZR88_RS20050at 4869.388 kb on + strand, within ABZR88_RS20050at 4869.487 kb on + strandat 4870.368 kb on + strandat 4870.408 kb on - strandat 4870.409 kb on + strandat 4870.416 kb on - strandat 4870.418 kb on - strandat 4870.434 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_high_K2HPO4
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4,868,252 - ABZR88_RS20045 0.21 +0.2
4,868,252 - ABZR88_RS20045 0.21 -0.2
4,868,278 + ABZR88_RS20045 0.25 -0.3
4,868,295 - ABZR88_RS20045 0.27 -0.5
4,868,306 + ABZR88_RS20045 0.29 +0.8
4,868,398 + ABZR88_RS20045 0.44 +0.2
4,868,399 - ABZR88_RS20045 0.44 -0.1
4,868,399 - ABZR88_RS20045 0.44 +0.8
4,868,432 + ABZR88_RS20045 0.49 +0.2
4,868,615 - ABZR88_RS20045 0.77 +0.3
4,868,675 - ABZR88_RS20045 0.87 +0.3
4,868,739 - +0.1
4,868,783 + +0.1
4,868,783 + -0.3
4,868,872 + -0.1
4,869,008 + -0.6
4,869,009 - -0.5
4,869,021 - -1.0
4,869,115 + ABZR88_RS20050 0.25 -0.7
4,869,157 + ABZR88_RS20050 0.32 -1.1
4,869,388 + ABZR88_RS20050 0.73 -1.3
4,869,388 + ABZR88_RS20050 0.73 -1.6
4,869,487 + -0.3
4,870,368 + -1.0
4,870,408 - -0.6
4,870,409 + -0.0
4,870,416 - -0.1
4,870,418 - -0.2
4,870,434 + +0.3

Or see this region's nucleotide sequence