Experiment: R2A_high_K2HPO4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS20040 and ABZR88_RS20045 are separated by 129 nucleotides ABZR88_RS20045 and ABZR88_RS20050 are separated by 217 nucleotides ABZR88_RS20050 and ABZR88_RS20055 are separated by 26 nucleotides
ABZR88_RS20040: ABZR88_RS20040 - ABC transporter permease, at 4,866,764 to 4,867,990
_RS20040
ABZR88_RS20045: ABZR88_RS20045 - MBL fold metallo-hydrolase, at 4,868,120 to 4,868,758
_RS20045
ABZR88_RS20050: ABZR88_RS20050 - gliding motility lipoprotein GldD, at 4,868,976 to 4,869,536
_RS20050
ABZR88_RS20055: ABZR88_RS20055 - shikimate dehydrogenase, at 4,869,563 to 4,870,363
_RS20055
Position (kb)
4868
4869
4870 Strain fitness (log2 ratio)
-1
0
1 at 4868.252 kb on - strand, within ABZR88_RS20045 at 4868.252 kb on - strand, within ABZR88_RS20045 at 4868.278 kb on + strand, within ABZR88_RS20045 at 4868.295 kb on - strand, within ABZR88_RS20045 at 4868.306 kb on + strand, within ABZR88_RS20045 at 4868.398 kb on + strand, within ABZR88_RS20045 at 4868.399 kb on - strand, within ABZR88_RS20045 at 4868.399 kb on - strand, within ABZR88_RS20045 at 4868.432 kb on + strand, within ABZR88_RS20045 at 4868.615 kb on - strand, within ABZR88_RS20045 at 4868.675 kb on - strand, within ABZR88_RS20045 at 4868.739 kb on - strand at 4868.783 kb on + strand at 4868.783 kb on + strand at 4868.872 kb on + strand at 4869.008 kb on + strand at 4869.009 kb on - strand at 4869.021 kb on - strand at 4869.115 kb on + strand, within ABZR88_RS20050 at 4869.157 kb on + strand, within ABZR88_RS20050 at 4869.388 kb on + strand, within ABZR88_RS20050 at 4869.388 kb on + strand, within ABZR88_RS20050 at 4869.487 kb on + strand at 4870.368 kb on + strand at 4870.408 kb on - strand at 4870.409 kb on + strand at 4870.416 kb on - strand at 4870.418 kb on - strand at 4870.434 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_high_K2HPO4 remove 4,868,252 - ABZR88_RS20045 0.21 +0.2 4,868,252 - ABZR88_RS20045 0.21 -0.2 4,868,278 + ABZR88_RS20045 0.25 -0.3 4,868,295 - ABZR88_RS20045 0.27 -0.5 4,868,306 + ABZR88_RS20045 0.29 +0.8 4,868,398 + ABZR88_RS20045 0.44 +0.2 4,868,399 - ABZR88_RS20045 0.44 -0.1 4,868,399 - ABZR88_RS20045 0.44 +0.8 4,868,432 + ABZR88_RS20045 0.49 +0.2 4,868,615 - ABZR88_RS20045 0.77 +0.3 4,868,675 - ABZR88_RS20045 0.87 +0.3 4,868,739 - +0.1 4,868,783 + +0.1 4,868,783 + -0.3 4,868,872 + -0.1 4,869,008 + -0.6 4,869,009 - -0.5 4,869,021 - -1.0 4,869,115 + ABZR88_RS20050 0.25 -0.7 4,869,157 + ABZR88_RS20050 0.32 -1.1 4,869,388 + ABZR88_RS20050 0.73 -1.3 4,869,388 + ABZR88_RS20050 0.73 -1.6 4,869,487 + -0.3 4,870,368 + -1.0 4,870,408 - -0.6 4,870,409 + -0.0 4,870,416 - -0.1 4,870,418 - -0.2 4,870,434 + +0.3
Or see this region's nucleotide sequence