Experiment: R2A_high_K2HPO4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS02780 and ABZR88_RS02785 are separated by 53 nucleotides ABZR88_RS02785 and ABZR88_RS02790 are separated by 92 nucleotides ABZR88_RS02790 and ABZR88_RS02795 are separated by 83 nucleotides
ABZR88_RS02780: ABZR88_RS02780 - peptide-methionine (R)-S-oxide reductase MsrB, at 652,359 to 652,844
_RS02780
ABZR88_RS02785: ABZR88_RS02785 - fasciclin domain-containing protein, at 652,898 to 653,482
_RS02785
ABZR88_RS02790: ABZR88_RS02790 - PD40 domain-containing protein, at 653,575 to 656,784
_RS02790
ABZR88_RS02795: ABZR88_RS02795 - penicillin-binding protein 1A, at 656,868 to 659,189
_RS02795
Position (kb) 653
654
655
656
657 Strain fitness (log2 ratio) -2
-1
0
1 at 652.589 kb on + strand, within ABZR88_RS02780 at 652.621 kb on + strand, within ABZR88_RS02780 at 652.697 kb on - strand, within ABZR88_RS02780 at 652.797 kb on + strand at 652.825 kb on - strand at 652.844 kb on + strand at 652.906 kb on + strand at 653.012 kb on + strand, within ABZR88_RS02785 at 653.039 kb on - strand, within ABZR88_RS02785 at 653.066 kb on - strand, within ABZR88_RS02785 at 653.068 kb on + strand, within ABZR88_RS02785 at 653.068 kb on + strand, within ABZR88_RS02785 at 653.149 kb on + strand, within ABZR88_RS02785 at 653.150 kb on - strand, within ABZR88_RS02785 at 653.296 kb on + strand, within ABZR88_RS02785 at 653.319 kb on + strand, within ABZR88_RS02785 at 653.482 kb on + strand at 653.483 kb on - strand at 653.494 kb on + strand at 653.662 kb on - strand at 653.723 kb on + strand at 653.878 kb on + strand at 653.938 kb on + strand, within ABZR88_RS02790 at 653.938 kb on + strand, within ABZR88_RS02790 at 653.945 kb on - strand, within ABZR88_RS02790 at 653.968 kb on - strand, within ABZR88_RS02790 at 654.030 kb on - strand, within ABZR88_RS02790 at 654.030 kb on - strand, within ABZR88_RS02790 at 654.123 kb on - strand, within ABZR88_RS02790 at 654.197 kb on + strand, within ABZR88_RS02790 at 654.197 kb on + strand, within ABZR88_RS02790 at 654.197 kb on + strand, within ABZR88_RS02790 at 654.198 kb on - strand, within ABZR88_RS02790 at 654.404 kb on + strand, within ABZR88_RS02790 at 654.692 kb on + strand, within ABZR88_RS02790 at 654.696 kb on + strand, within ABZR88_RS02790 at 654.812 kb on + strand, within ABZR88_RS02790 at 654.813 kb on - strand, within ABZR88_RS02790 at 654.952 kb on + strand, within ABZR88_RS02790 at 654.953 kb on - strand, within ABZR88_RS02790 at 655.019 kb on - strand, within ABZR88_RS02790 at 655.042 kb on - strand, within ABZR88_RS02790 at 655.053 kb on + strand, within ABZR88_RS02790 at 655.108 kb on - strand, within ABZR88_RS02790 at 655.191 kb on + strand, within ABZR88_RS02790 at 655.377 kb on + strand, within ABZR88_RS02790 at 655.488 kb on - strand, within ABZR88_RS02790 at 655.488 kb on - strand, within ABZR88_RS02790 at 655.566 kb on + strand, within ABZR88_RS02790 at 655.618 kb on + strand, within ABZR88_RS02790 at 655.801 kb on + strand, within ABZR88_RS02790 at 655.858 kb on - strand, within ABZR88_RS02790 at 656.025 kb on - strand, within ABZR88_RS02790 at 656.422 kb on - strand, within ABZR88_RS02790 at 656.422 kb on - strand, within ABZR88_RS02790 at 656.520 kb on + strand at 656.550 kb on - strand at 656.603 kb on + strand at 656.681 kb on + strand at 656.786 kb on + strand at 656.846 kb on + strand at 656.923 kb on - strand at 656.933 kb on + strand at 657.197 kb on + strand, within ABZR88_RS02795 at 657.206 kb on + strand, within ABZR88_RS02795 at 657.342 kb on + strand, within ABZR88_RS02795 at 657.348 kb on + strand, within ABZR88_RS02795 at 657.565 kb on - strand, within ABZR88_RS02795 at 657.732 kb on - strand, within ABZR88_RS02795
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_high_K2HPO4 remove 652,589 + ABZR88_RS02780 0.47 +0.6 652,621 + ABZR88_RS02780 0.54 -0.3 652,697 - ABZR88_RS02780 0.70 -0.1 652,797 + -0.2 652,825 - +0.5 652,844 + +0.0 652,906 + -0.2 653,012 + ABZR88_RS02785 0.19 +0.4 653,039 - ABZR88_RS02785 0.24 +0.0 653,066 - ABZR88_RS02785 0.29 -0.1 653,068 + ABZR88_RS02785 0.29 -1.1 653,068 + ABZR88_RS02785 0.29 -0.5 653,149 + ABZR88_RS02785 0.43 -0.5 653,150 - ABZR88_RS02785 0.43 -0.4 653,296 + ABZR88_RS02785 0.68 -0.5 653,319 + ABZR88_RS02785 0.72 -0.7 653,482 + -0.2 653,483 - +0.5 653,494 + -0.8 653,662 - -0.8 653,723 + -1.0 653,878 + -0.6 653,938 + ABZR88_RS02790 0.11 -0.7 653,938 + ABZR88_RS02790 0.11 -1.2 653,945 - ABZR88_RS02790 0.12 -1.0 653,968 - ABZR88_RS02790 0.12 -1.3 654,030 - ABZR88_RS02790 0.14 +0.8 654,030 - ABZR88_RS02790 0.14 -0.8 654,123 - ABZR88_RS02790 0.17 -0.6 654,197 + ABZR88_RS02790 0.19 -2.4 654,197 + ABZR88_RS02790 0.19 -0.3 654,197 + ABZR88_RS02790 0.19 -0.1 654,198 - ABZR88_RS02790 0.19 -1.4 654,404 + ABZR88_RS02790 0.26 -1.0 654,692 + ABZR88_RS02790 0.35 -0.6 654,696 + ABZR88_RS02790 0.35 -0.9 654,812 + ABZR88_RS02790 0.39 -0.3 654,813 - ABZR88_RS02790 0.39 -1.1 654,952 + ABZR88_RS02790 0.43 -1.0 654,953 - ABZR88_RS02790 0.43 -0.6 655,019 - ABZR88_RS02790 0.45 +0.4 655,042 - ABZR88_RS02790 0.46 -0.0 655,053 + ABZR88_RS02790 0.46 -1.2 655,108 - ABZR88_RS02790 0.48 -0.6 655,191 + ABZR88_RS02790 0.50 -1.6 655,377 + ABZR88_RS02790 0.56 -0.2 655,488 - ABZR88_RS02790 0.60 -0.8 655,488 - ABZR88_RS02790 0.60 -1.2 655,566 + ABZR88_RS02790 0.62 -0.9 655,618 + ABZR88_RS02790 0.64 -1.0 655,801 + ABZR88_RS02790 0.69 -1.1 655,858 - ABZR88_RS02790 0.71 -0.6 656,025 - ABZR88_RS02790 0.76 -0.3 656,422 - ABZR88_RS02790 0.89 -0.6 656,422 - ABZR88_RS02790 0.89 -0.9 656,520 + -1.2 656,550 - -1.0 656,603 + -0.3 656,681 + -0.6 656,786 + -0.3 656,846 + -0.5 656,923 - +0.2 656,933 + -0.2 657,197 + ABZR88_RS02795 0.14 -0.2 657,206 + ABZR88_RS02795 0.15 -0.7 657,342 + ABZR88_RS02795 0.20 -0.1 657,348 + ABZR88_RS02795 0.21 +0.2 657,565 - ABZR88_RS02795 0.30 -0.2 657,732 - ABZR88_RS02795 0.37 +0.7
Or see this region's nucleotide sequence