Experiment: R2A_low_K2HPO4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS12885 and ABZR88_RS12890 are separated by 16 nucleotides ABZR88_RS12890 and ABZR88_RS12895 are separated by 164 nucleotides
ABZR88_RS12885: ABZR88_RS12885 - RagB/SusD family nutrient uptake outer membrane protein, at 3,163,759 to 3,165,453
_RS12885
ABZR88_RS12890: ABZR88_RS12890 - TonB-dependent receptor, at 3,165,470 to 3,168,844
_RS12890
ABZR88_RS12895: ABZR88_RS12895 - FecR family protein, at 3,169,009 to 3,169,878
_RS12895
Position (kb)
3165
3166
3167
3168
3169 Strain fitness (log2 ratio)
-1
0
1 at 3164.545 kb on + strand, within ABZR88_RS12885 at 3164.546 kb on - strand, within ABZR88_RS12885 at 3164.661 kb on - strand, within ABZR88_RS12885 at 3164.662 kb on + strand, within ABZR88_RS12885 at 3164.718 kb on + strand, within ABZR88_RS12885 at 3164.814 kb on + strand, within ABZR88_RS12885 at 3164.814 kb on + strand, within ABZR88_RS12885 at 3164.977 kb on + strand, within ABZR88_RS12885 at 3165.010 kb on - strand, within ABZR88_RS12885 at 3165.117 kb on + strand, within ABZR88_RS12885 at 3165.118 kb on - strand, within ABZR88_RS12885 at 3165.124 kb on - strand, within ABZR88_RS12885 at 3165.159 kb on + strand, within ABZR88_RS12885 at 3165.261 kb on - strand, within ABZR88_RS12885 at 3165.362 kb on - strand at 3165.439 kb on - strand at 3165.439 kb on - strand at 3165.439 kb on - strand at 3165.454 kb on - strand at 3165.608 kb on - strand at 3165.761 kb on - strand at 3165.783 kb on + strand at 3165.828 kb on - strand, within ABZR88_RS12890 at 3165.922 kb on - strand, within ABZR88_RS12890 at 3165.937 kb on + strand, within ABZR88_RS12890 at 3166.115 kb on - strand, within ABZR88_RS12890 at 3166.297 kb on + strand, within ABZR88_RS12890 at 3166.298 kb on - strand, within ABZR88_RS12890 at 3166.329 kb on - strand, within ABZR88_RS12890 at 3166.411 kb on - strand, within ABZR88_RS12890 at 3166.514 kb on - strand, within ABZR88_RS12890 at 3166.723 kb on + strand, within ABZR88_RS12890 at 3166.816 kb on - strand, within ABZR88_RS12890 at 3166.927 kb on + strand, within ABZR88_RS12890 at 3167.063 kb on - strand, within ABZR88_RS12890 at 3167.086 kb on - strand, within ABZR88_RS12890 at 3167.292 kb on - strand, within ABZR88_RS12890 at 3167.307 kb on - strand, within ABZR88_RS12890 at 3167.392 kb on + strand, within ABZR88_RS12890 at 3167.523 kb on + strand, within ABZR88_RS12890 at 3167.550 kb on - strand, within ABZR88_RS12890 at 3167.716 kb on + strand, within ABZR88_RS12890 at 3167.769 kb on + strand, within ABZR88_RS12890 at 3167.856 kb on - strand, within ABZR88_RS12890 at 3168.297 kb on + strand, within ABZR88_RS12890 at 3168.302 kb on + strand, within ABZR88_RS12890 at 3168.303 kb on - strand, within ABZR88_RS12890 at 3168.362 kb on + strand, within ABZR88_RS12890 at 3168.571 kb on + strand at 3168.824 kb on + strand at 3168.964 kb on + strand at 3169.090 kb on - strand at 3169.166 kb on + strand, within ABZR88_RS12895 at 3169.404 kb on - strand, within ABZR88_RS12895 at 3169.407 kb on + strand, within ABZR88_RS12895 at 3169.456 kb on + strand, within ABZR88_RS12895 at 3169.809 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_low_K2HPO4 remove 3,164,545 + ABZR88_RS12885 0.46 +0.1 3,164,546 - ABZR88_RS12885 0.46 -0.0 3,164,661 - ABZR88_RS12885 0.53 +0.8 3,164,662 + ABZR88_RS12885 0.53 -0.5 3,164,718 + ABZR88_RS12885 0.57 +0.2 3,164,814 + ABZR88_RS12885 0.62 +0.1 3,164,814 + ABZR88_RS12885 0.62 +0.1 3,164,977 + ABZR88_RS12885 0.72 -0.2 3,165,010 - ABZR88_RS12885 0.74 -0.1 3,165,117 + ABZR88_RS12885 0.80 +0.1 3,165,118 - ABZR88_RS12885 0.80 -0.1 3,165,124 - ABZR88_RS12885 0.81 +0.0 3,165,159 + ABZR88_RS12885 0.83 +0.1 3,165,261 - ABZR88_RS12885 0.89 -0.5 3,165,362 - -0.1 3,165,439 - -0.6 3,165,439 - +0.1 3,165,439 - -0.1 3,165,454 - -0.0 3,165,608 - -0.0 3,165,761 - -0.2 3,165,783 + +0.1 3,165,828 - ABZR88_RS12890 0.11 -0.1 3,165,922 - ABZR88_RS12890 0.13 -0.0 3,165,937 + ABZR88_RS12890 0.14 -0.3 3,166,115 - ABZR88_RS12890 0.19 +0.1 3,166,297 + ABZR88_RS12890 0.25 +0.8 3,166,298 - ABZR88_RS12890 0.25 -0.8 3,166,329 - ABZR88_RS12890 0.25 -0.2 3,166,411 - ABZR88_RS12890 0.28 -0.0 3,166,514 - ABZR88_RS12890 0.31 -0.0 3,166,723 + ABZR88_RS12890 0.37 +0.2 3,166,816 - ABZR88_RS12890 0.40 +0.2 3,166,927 + ABZR88_RS12890 0.43 +0.5 3,167,063 - ABZR88_RS12890 0.47 -0.1 3,167,086 - ABZR88_RS12890 0.48 +0.3 3,167,292 - ABZR88_RS12890 0.54 -0.2 3,167,307 - ABZR88_RS12890 0.54 -0.3 3,167,392 + ABZR88_RS12890 0.57 -0.0 3,167,523 + ABZR88_RS12890 0.61 -0.1 3,167,550 - ABZR88_RS12890 0.62 +0.1 3,167,716 + ABZR88_RS12890 0.67 -0.1 3,167,769 + ABZR88_RS12890 0.68 -0.0 3,167,856 - ABZR88_RS12890 0.71 +0.1 3,168,297 + ABZR88_RS12890 0.84 +0.2 3,168,302 + ABZR88_RS12890 0.84 +0.1 3,168,303 - ABZR88_RS12890 0.84 +0.6 3,168,362 + ABZR88_RS12890 0.86 -0.3 3,168,571 + -0.2 3,168,824 + -0.2 3,168,964 + -0.5 3,169,090 - -0.3 3,169,166 + ABZR88_RS12895 0.18 +0.2 3,169,404 - ABZR88_RS12895 0.45 -0.1 3,169,407 + ABZR88_RS12895 0.46 -0.4 3,169,456 + ABZR88_RS12895 0.51 +0.1 3,169,809 + -0.1
Or see this region's nucleotide sequence