Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS12890

Experiment: R2A_low_K2HPO4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS12885 and ABZR88_RS12890 are separated by 16 nucleotidesABZR88_RS12890 and ABZR88_RS12895 are separated by 164 nucleotides ABZR88_RS12885: ABZR88_RS12885 - RagB/SusD family nutrient uptake outer membrane protein, at 3,163,759 to 3,165,453 _RS12885 ABZR88_RS12890: ABZR88_RS12890 - TonB-dependent receptor, at 3,165,470 to 3,168,844 _RS12890 ABZR88_RS12895: ABZR88_RS12895 - FecR family protein, at 3,169,009 to 3,169,878 _RS12895 Position (kb) 3165 3166 3167 3168 3169Strain fitness (log2 ratio) -1 0 1at 3164.545 kb on + strand, within ABZR88_RS12885at 3164.546 kb on - strand, within ABZR88_RS12885at 3164.661 kb on - strand, within ABZR88_RS12885at 3164.662 kb on + strand, within ABZR88_RS12885at 3164.718 kb on + strand, within ABZR88_RS12885at 3164.814 kb on + strand, within ABZR88_RS12885at 3164.814 kb on + strand, within ABZR88_RS12885at 3164.977 kb on + strand, within ABZR88_RS12885at 3165.010 kb on - strand, within ABZR88_RS12885at 3165.117 kb on + strand, within ABZR88_RS12885at 3165.118 kb on - strand, within ABZR88_RS12885at 3165.124 kb on - strand, within ABZR88_RS12885at 3165.159 kb on + strand, within ABZR88_RS12885at 3165.261 kb on - strand, within ABZR88_RS12885at 3165.362 kb on - strandat 3165.439 kb on - strandat 3165.439 kb on - strandat 3165.439 kb on - strandat 3165.454 kb on - strandat 3165.608 kb on - strandat 3165.761 kb on - strandat 3165.783 kb on + strandat 3165.828 kb on - strand, within ABZR88_RS12890at 3165.922 kb on - strand, within ABZR88_RS12890at 3165.937 kb on + strand, within ABZR88_RS12890at 3166.115 kb on - strand, within ABZR88_RS12890at 3166.297 kb on + strand, within ABZR88_RS12890at 3166.298 kb on - strand, within ABZR88_RS12890at 3166.329 kb on - strand, within ABZR88_RS12890at 3166.411 kb on - strand, within ABZR88_RS12890at 3166.514 kb on - strand, within ABZR88_RS12890at 3166.723 kb on + strand, within ABZR88_RS12890at 3166.816 kb on - strand, within ABZR88_RS12890at 3166.927 kb on + strand, within ABZR88_RS12890at 3167.063 kb on - strand, within ABZR88_RS12890at 3167.086 kb on - strand, within ABZR88_RS12890at 3167.292 kb on - strand, within ABZR88_RS12890at 3167.307 kb on - strand, within ABZR88_RS12890at 3167.392 kb on + strand, within ABZR88_RS12890at 3167.523 kb on + strand, within ABZR88_RS12890at 3167.550 kb on - strand, within ABZR88_RS12890at 3167.716 kb on + strand, within ABZR88_RS12890at 3167.769 kb on + strand, within ABZR88_RS12890at 3167.856 kb on - strand, within ABZR88_RS12890at 3168.297 kb on + strand, within ABZR88_RS12890at 3168.302 kb on + strand, within ABZR88_RS12890at 3168.303 kb on - strand, within ABZR88_RS12890at 3168.362 kb on + strand, within ABZR88_RS12890at 3168.571 kb on + strandat 3168.824 kb on + strandat 3168.964 kb on + strandat 3169.090 kb on - strandat 3169.166 kb on + strand, within ABZR88_RS12895at 3169.404 kb on - strand, within ABZR88_RS12895at 3169.407 kb on + strand, within ABZR88_RS12895at 3169.456 kb on + strand, within ABZR88_RS12895at 3169.809 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_low_K2HPO4
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3,164,545 + ABZR88_RS12885 0.46 +0.1
3,164,546 - ABZR88_RS12885 0.46 -0.0
3,164,661 - ABZR88_RS12885 0.53 +0.8
3,164,662 + ABZR88_RS12885 0.53 -0.5
3,164,718 + ABZR88_RS12885 0.57 +0.2
3,164,814 + ABZR88_RS12885 0.62 +0.1
3,164,814 + ABZR88_RS12885 0.62 +0.1
3,164,977 + ABZR88_RS12885 0.72 -0.2
3,165,010 - ABZR88_RS12885 0.74 -0.1
3,165,117 + ABZR88_RS12885 0.80 +0.1
3,165,118 - ABZR88_RS12885 0.80 -0.1
3,165,124 - ABZR88_RS12885 0.81 +0.0
3,165,159 + ABZR88_RS12885 0.83 +0.1
3,165,261 - ABZR88_RS12885 0.89 -0.5
3,165,362 - -0.1
3,165,439 - -0.6
3,165,439 - +0.1
3,165,439 - -0.1
3,165,454 - -0.0
3,165,608 - -0.0
3,165,761 - -0.2
3,165,783 + +0.1
3,165,828 - ABZR88_RS12890 0.11 -0.1
3,165,922 - ABZR88_RS12890 0.13 -0.0
3,165,937 + ABZR88_RS12890 0.14 -0.3
3,166,115 - ABZR88_RS12890 0.19 +0.1
3,166,297 + ABZR88_RS12890 0.25 +0.8
3,166,298 - ABZR88_RS12890 0.25 -0.8
3,166,329 - ABZR88_RS12890 0.25 -0.2
3,166,411 - ABZR88_RS12890 0.28 -0.0
3,166,514 - ABZR88_RS12890 0.31 -0.0
3,166,723 + ABZR88_RS12890 0.37 +0.2
3,166,816 - ABZR88_RS12890 0.40 +0.2
3,166,927 + ABZR88_RS12890 0.43 +0.5
3,167,063 - ABZR88_RS12890 0.47 -0.1
3,167,086 - ABZR88_RS12890 0.48 +0.3
3,167,292 - ABZR88_RS12890 0.54 -0.2
3,167,307 - ABZR88_RS12890 0.54 -0.3
3,167,392 + ABZR88_RS12890 0.57 -0.0
3,167,523 + ABZR88_RS12890 0.61 -0.1
3,167,550 - ABZR88_RS12890 0.62 +0.1
3,167,716 + ABZR88_RS12890 0.67 -0.1
3,167,769 + ABZR88_RS12890 0.68 -0.0
3,167,856 - ABZR88_RS12890 0.71 +0.1
3,168,297 + ABZR88_RS12890 0.84 +0.2
3,168,302 + ABZR88_RS12890 0.84 +0.1
3,168,303 - ABZR88_RS12890 0.84 +0.6
3,168,362 + ABZR88_RS12890 0.86 -0.3
3,168,571 + -0.2
3,168,824 + -0.2
3,168,964 + -0.5
3,169,090 - -0.3
3,169,166 + ABZR88_RS12895 0.18 +0.2
3,169,404 - ABZR88_RS12895 0.45 -0.1
3,169,407 + ABZR88_RS12895 0.46 -0.4
3,169,456 + ABZR88_RS12895 0.51 +0.1
3,169,809 + -0.1

Or see this region's nucleotide sequence