Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06978

Experiment: NL-CCM; high oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06977 and MPMX19_06978 are separated by 508 nucleotidesMPMX19_06978 and MPMX19_06979 are separated by 118 nucleotidesMPMX19_06979 and MPMX19_06980 are separated by 7 nucleotides MPMX19_06977: MPMX19_06977 - 2-oxoglutarate dehydrogenase E1 component, at 255,336 to 258,035 _06977 MPMX19_06978: MPMX19_06978 - Alpha-keto acid-binding periplasmic protein TakP, at 258,544 to 259,629 _06978 MPMX19_06979: MPMX19_06979 - hypothetical protein, at 259,748 to 260,395 _06979 MPMX19_06980: MPMX19_06980 - hypothetical protein, at 260,403 to 262,355 _06980 Position (kb) 258 259 260Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 257.635 kb on + strand, within MPMX19_06977at 257.635 kb on + strand, within MPMX19_06977at 257.635 kb on + strand, within MPMX19_06977at 257.635 kb on + strand, within MPMX19_06977at 257.635 kb on + strand, within MPMX19_06977at 257.636 kb on - strand, within MPMX19_06977at 257.676 kb on - strand, within MPMX19_06977at 257.707 kb on + strand, within MPMX19_06977at 257.707 kb on + strand, within MPMX19_06977at 257.707 kb on + strand, within MPMX19_06977at 257.708 kb on - strand, within MPMX19_06977at 257.708 kb on - strand, within MPMX19_06977at 257.708 kb on - strand, within MPMX19_06977at 257.708 kb on - strand, within MPMX19_06977at 257.992 kb on + strandat 258.029 kb on + strandat 258.030 kb on - strandat 258.030 kb on - strandat 258.030 kb on - strandat 258.030 kb on - strandat 258.030 kb on - strandat 258.148 kb on + strandat 258.149 kb on - strandat 258.682 kb on + strand, within MPMX19_06978at 258.683 kb on - strand, within MPMX19_06978at 258.683 kb on - strand, within MPMX19_06978at 258.683 kb on - strand, within MPMX19_06978at 258.835 kb on + strand, within MPMX19_06978at 258.835 kb on + strand, within MPMX19_06978at 258.835 kb on + strand, within MPMX19_06978at 258.835 kb on + strand, within MPMX19_06978at 258.835 kb on + strand, within MPMX19_06978at 258.835 kb on + strand, within MPMX19_06978at 258.835 kb on + strand, within MPMX19_06978at 258.836 kb on - strand, within MPMX19_06978at 258.836 kb on - strand, within MPMX19_06978at 258.836 kb on - strand, within MPMX19_06978at 258.836 kb on - strand, within MPMX19_06978at 258.836 kb on - strand, within MPMX19_06978at 258.836 kb on - strand, within MPMX19_06978at 258.838 kb on + strand, within MPMX19_06978at 258.838 kb on + strand, within MPMX19_06978at 258.838 kb on + strand, within MPMX19_06978at 258.838 kb on + strand, within MPMX19_06978at 258.838 kb on + strand, within MPMX19_06978at 258.838 kb on + strand, within MPMX19_06978at 258.838 kb on + strand, within MPMX19_06978at 258.838 kb on + strand, within MPMX19_06978at 258.839 kb on - strand, within MPMX19_06978at 258.839 kb on - strand, within MPMX19_06978at 258.839 kb on - strand, within MPMX19_06978at 258.839 kb on - strand, within MPMX19_06978at 258.841 kb on + strand, within MPMX19_06978at 258.841 kb on + strand, within MPMX19_06978at 258.841 kb on + strand, within MPMX19_06978at 258.841 kb on + strand, within MPMX19_06978at 258.841 kb on + strand, within MPMX19_06978at 258.841 kb on + strand, within MPMX19_06978at 258.841 kb on + strand, within MPMX19_06978at 258.841 kb on + strand, within MPMX19_06978at 258.841 kb on + strand, within MPMX19_06978at 258.841 kb on + strand, within MPMX19_06978at 258.841 kb on + strand, within MPMX19_06978at 258.841 kb on + strand, within MPMX19_06978at 258.841 kb on + strand, within MPMX19_06978at 258.842 kb on - strand, within MPMX19_06978at 258.842 kb on - strand, within MPMX19_06978at 258.842 kb on - strand, within MPMX19_06978at 258.842 kb on - strand, within MPMX19_06978at 258.842 kb on - strand, within MPMX19_06978at 258.842 kb on - strand, within MPMX19_06978at 258.842 kb on - strand, within MPMX19_06978at 258.842 kb on - strand, within MPMX19_06978at 258.842 kb on - strand, within MPMX19_06978at 258.842 kb on - strand, within MPMX19_06978at 258.842 kb on - strand, within MPMX19_06978at 258.842 kb on - strand, within MPMX19_06978at 258.922 kb on + strand, within MPMX19_06978at 258.922 kb on + strand, within MPMX19_06978at 258.922 kb on + strand, within MPMX19_06978at 258.923 kb on - strand, within MPMX19_06978at 258.958 kb on + strand, within MPMX19_06978at 258.958 kb on + strand, within MPMX19_06978at 258.958 kb on + strand, within MPMX19_06978at 258.959 kb on - strand, within MPMX19_06978at 258.959 kb on - strand, within MPMX19_06978at 258.959 kb on - strand, within MPMX19_06978at 259.144 kb on + strand, within MPMX19_06978at 259.144 kb on + strand, within MPMX19_06978at 259.145 kb on - strand, within MPMX19_06978at 259.145 kb on - strand, within MPMX19_06978at 259.195 kb on + strand, within MPMX19_06978at 259.196 kb on - strand, within MPMX19_06978at 259.196 kb on - strand, within MPMX19_06978at 259.196 kb on - strand, within MPMX19_06978at 259.196 kb on - strand, within MPMX19_06978at 259.219 kb on + strand, within MPMX19_06978at 259.219 kb on + strand, within MPMX19_06978at 259.220 kb on - strand, within MPMX19_06978at 259.237 kb on + strand, within MPMX19_06978at 259.237 kb on + strand, within MPMX19_06978at 259.237 kb on + strand, within MPMX19_06978at 259.237 kb on + strand, within MPMX19_06978at 259.237 kb on + strand, within MPMX19_06978at 259.237 kb on + strand, within MPMX19_06978at 259.237 kb on + strand, within MPMX19_06978at 259.237 kb on + strand, within MPMX19_06978at 259.238 kb on - strand, within MPMX19_06978at 259.238 kb on - strand, within MPMX19_06978at 259.238 kb on - strand, within MPMX19_06978at 259.238 kb on - strand, within MPMX19_06978at 259.238 kb on - strand, within MPMX19_06978at 259.238 kb on - strand, within MPMX19_06978at 259.238 kb on - strand, within MPMX19_06978at 259.238 kb on - strand, within MPMX19_06978at 259.238 kb on - strand, within MPMX19_06978at 259.238 kb on - strand, within MPMX19_06978at 259.238 kb on - strand, within MPMX19_06978at 259.238 kb on - strand, within MPMX19_06978at 259.238 kb on - strand, within MPMX19_06978at 259.238 kb on - strand, within MPMX19_06978at 259.238 kb on - strand, within MPMX19_06978at 259.238 kb on - strand, within MPMX19_06978at 259.240 kb on + strand, within MPMX19_06978at 259.241 kb on - strand, within MPMX19_06978at 259.241 kb on - strand, within MPMX19_06978at 259.321 kb on + strand, within MPMX19_06978at 259.379 kb on - strand, within MPMX19_06978at 259.489 kb on + strand, within MPMX19_06978at 259.489 kb on + strand, within MPMX19_06978at 259.490 kb on - strand, within MPMX19_06978at 259.490 kb on - strand, within MPMX19_06978at 259.531 kb on + strandat 259.532 kb on - strandat 259.588 kb on + strandat 259.588 kb on + strandat 259.588 kb on + strandat 259.589 kb on - strandat 259.589 kb on - strandat 259.594 kb on + strandat 259.594 kb on + strandat 259.595 kb on - strandat 259.776 kb on + strandat 260.135 kb on + strand, within MPMX19_06979at 260.135 kb on + strand, within MPMX19_06979at 260.135 kb on + strand, within MPMX19_06979at 260.135 kb on + strand, within MPMX19_06979at 260.136 kb on - strand, within MPMX19_06979at 260.136 kb on - strand, within MPMX19_06979at 260.136 kb on - strand, within MPMX19_06979at 260.393 kb on + strandat 260.493 kb on + strandat 260.493 kb on + strandat 260.493 kb on + strandat 260.493 kb on + strandat 260.493 kb on + strandat 260.494 kb on - strandat 260.494 kb on - strandat 260.494 kb on - strandat 260.494 kb on - strandat 260.494 kb on - strandat 260.494 kb on - strandat 260.494 kb on - strandat 260.494 kb on - strandat 260.494 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; high oxygen
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257,635 + MPMX19_06977 0.85 -0.0
257,635 + MPMX19_06977 0.85 +0.3
257,635 + MPMX19_06977 0.85 -1.0
257,635 + MPMX19_06977 0.85 -0.0
257,635 + MPMX19_06977 0.85 -0.6
257,636 - MPMX19_06977 0.85 +0.5
257,676 - MPMX19_06977 0.87 -0.5
257,707 + MPMX19_06977 0.88 -0.0
257,707 + MPMX19_06977 0.88 -0.2
257,707 + MPMX19_06977 0.88 -0.6
257,708 - MPMX19_06977 0.88 +1.8
257,708 - MPMX19_06977 0.88 -0.0
257,708 - MPMX19_06977 0.88 +0.0
257,708 - MPMX19_06977 0.88 -1.0
257,992 + +0.5
258,029 + +1.5
258,030 - -1.5
258,030 - +0.1
258,030 - +0.1
258,030 - +0.2
258,030 - -0.5
258,148 + -0.3
258,149 - -0.3
258,682 + MPMX19_06978 0.13 +1.1
258,683 - MPMX19_06978 0.13 -0.1
258,683 - MPMX19_06978 0.13 -0.4
258,683 - MPMX19_06978 0.13 -0.0
258,835 + MPMX19_06978 0.27 -0.5
258,835 + MPMX19_06978 0.27 +0.4
258,835 + MPMX19_06978 0.27 +1.1
258,835 + MPMX19_06978 0.27 -0.1
258,835 + MPMX19_06978 0.27 -0.8
258,835 + MPMX19_06978 0.27 -0.7
258,835 + MPMX19_06978 0.27 -1.2
258,836 - MPMX19_06978 0.27 +0.2
258,836 - MPMX19_06978 0.27 -1.2
258,836 - MPMX19_06978 0.27 -1.5
258,836 - MPMX19_06978 0.27 +0.1
258,836 - MPMX19_06978 0.27 -1.9
258,836 - MPMX19_06978 0.27 -1.2
258,838 + MPMX19_06978 0.27 -1.6
258,838 + MPMX19_06978 0.27 -2.0
258,838 + MPMX19_06978 0.27 -1.2
258,838 + MPMX19_06978 0.27 -0.5
258,838 + MPMX19_06978 0.27 +0.1
258,838 + MPMX19_06978 0.27 -0.3
258,838 + MPMX19_06978 0.27 -0.1
258,838 + MPMX19_06978 0.27 -1.1
258,839 - MPMX19_06978 0.27 -0.5
258,839 - MPMX19_06978 0.27 -1.3
258,839 - MPMX19_06978 0.27 +0.1
258,839 - MPMX19_06978 0.27 +0.3
258,841 + MPMX19_06978 0.27 +1.8
258,841 + MPMX19_06978 0.27 -1.3
258,841 + MPMX19_06978 0.27 +1.0
258,841 + MPMX19_06978 0.27 -0.7
258,841 + MPMX19_06978 0.27 -0.8
258,841 + MPMX19_06978 0.27 +0.7
258,841 + MPMX19_06978 0.27 +0.5
258,841 + MPMX19_06978 0.27 -2.4
258,841 + MPMX19_06978 0.27 -0.4
258,841 + MPMX19_06978 0.27 +1.5
258,841 + MPMX19_06978 0.27 -0.5
258,841 + MPMX19_06978 0.27 -0.2
258,841 + MPMX19_06978 0.27 -1.0
258,842 - MPMX19_06978 0.27 +3.1
258,842 - MPMX19_06978 0.27 +0.5
258,842 - MPMX19_06978 0.27 -1.1
258,842 - MPMX19_06978 0.27 +0.2
258,842 - MPMX19_06978 0.27 -0.6
258,842 - MPMX19_06978 0.27 -1.3
258,842 - MPMX19_06978 0.27 -0.3
258,842 - MPMX19_06978 0.27 -0.6
258,842 - MPMX19_06978 0.27 +0.6
258,842 - MPMX19_06978 0.27 -0.3
258,842 - MPMX19_06978 0.27 -0.9
258,842 - MPMX19_06978 0.27 -0.4
258,922 + MPMX19_06978 0.35 -1.9
258,922 + MPMX19_06978 0.35 -0.6
258,922 + MPMX19_06978 0.35 -0.6
258,923 - MPMX19_06978 0.35 -0.3
258,958 + MPMX19_06978 0.38 -0.9
258,958 + MPMX19_06978 0.38 -1.0
258,958 + MPMX19_06978 0.38 -0.2
258,959 - MPMX19_06978 0.38 -1.9
258,959 - MPMX19_06978 0.38 -0.6
258,959 - MPMX19_06978 0.38 +1.3
259,144 + MPMX19_06978 0.55 -1.2
259,144 + MPMX19_06978 0.55 +0.5
259,145 - MPMX19_06978 0.55 -0.5
259,145 - MPMX19_06978 0.55 -0.1
259,195 + MPMX19_06978 0.60 +1.3
259,196 - MPMX19_06978 0.60 +1.0
259,196 - MPMX19_06978 0.60 +0.0
259,196 - MPMX19_06978 0.60 -0.5
259,196 - MPMX19_06978 0.60 +0.1
259,219 + MPMX19_06978 0.62 -1.6
259,219 + MPMX19_06978 0.62 -2.8
259,220 - MPMX19_06978 0.62 +0.4
259,237 + MPMX19_06978 0.64 +0.2
259,237 + MPMX19_06978 0.64 -2.8
259,237 + MPMX19_06978 0.64 -0.5
259,237 + MPMX19_06978 0.64 -1.0
259,237 + MPMX19_06978 0.64 -0.2
259,237 + MPMX19_06978 0.64 +1.5
259,237 + MPMX19_06978 0.64 +1.0
259,237 + MPMX19_06978 0.64 +0.1
259,238 - MPMX19_06978 0.64 -0.7
259,238 - MPMX19_06978 0.64 -0.6
259,238 - MPMX19_06978 0.64 -0.9
259,238 - MPMX19_06978 0.64 -0.3
259,238 - MPMX19_06978 0.64 +0.8
259,238 - MPMX19_06978 0.64 -1.0
259,238 - MPMX19_06978 0.64 -1.9
259,238 - MPMX19_06978 0.64 -0.0
259,238 - MPMX19_06978 0.64 +0.3
259,238 - MPMX19_06978 0.64 -1.3
259,238 - MPMX19_06978 0.64 -1.6
259,238 - MPMX19_06978 0.64 -1.6
259,238 - MPMX19_06978 0.64 -0.6
259,238 - MPMX19_06978 0.64 -0.3
259,238 - MPMX19_06978 0.64 -0.5
259,238 - MPMX19_06978 0.64 -0.8
259,240 + MPMX19_06978 0.64 +1.2
259,241 - MPMX19_06978 0.64 +0.2
259,241 - MPMX19_06978 0.64 +1.5
259,321 + MPMX19_06978 0.72 -0.0
259,379 - MPMX19_06978 0.77 -1.9
259,489 + MPMX19_06978 0.87 +0.1
259,489 + MPMX19_06978 0.87 -1.3
259,490 - MPMX19_06978 0.87 +0.3
259,490 - MPMX19_06978 0.87 +0.7
259,531 + -0.5
259,532 - +0.1
259,588 + -0.1
259,588 + -0.6
259,588 + -0.6
259,589 - -0.5
259,589 - -1.3
259,594 + -0.0
259,594 + -0.7
259,595 - -2.9
259,776 + +0.1
260,135 + MPMX19_06979 0.60 -0.5
260,135 + MPMX19_06979 0.60 +1.5
260,135 + MPMX19_06979 0.60 +0.1
260,135 + MPMX19_06979 0.60 -1.8
260,136 - MPMX19_06979 0.60 -0.5
260,136 - MPMX19_06979 0.60 +0.2
260,136 - MPMX19_06979 0.60 +1.1
260,393 + -1.6
260,493 + -0.4
260,493 + -0.8
260,493 + -0.0
260,493 + +0.2
260,493 + -2.6
260,494 - +0.6
260,494 - -0.5
260,494 - -0.5
260,494 - -0.3
260,494 - +1.1
260,494 - +0.1
260,494 - -0.6
260,494 - -1.3
260,494 - -0.8

Or see this region's nucleotide sequence