Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06512

Experiment: NL-CCM; high oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06511 and MPMX19_06512 overlap by 1 nucleotidesMPMX19_06512 and MPMX19_06513 are separated by 9 nucleotides MPMX19_06511: MPMX19_06511 - hypothetical protein, at 295,231 to 296,271 _06511 MPMX19_06512: MPMX19_06512 - Dimethyl sulfoxide/trimethylamine N-oxide reductase, at 296,271 to 298,571 _06512 MPMX19_06513: MPMX19_06513 - putative N-succinyldiaminopimelate aminotransferase DapC, at 298,581 to 299,747 _06513 Position (kb) 296 297 298 299Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 295.346 kb on + strand, within MPMX19_06511at 295.347 kb on - strand, within MPMX19_06511at 295.396 kb on - strand, within MPMX19_06511at 295.396 kb on - strand, within MPMX19_06511at 295.640 kb on - strand, within MPMX19_06511at 295.808 kb on - strand, within MPMX19_06511at 295.808 kb on - strand, within MPMX19_06511at 295.904 kb on - strand, within MPMX19_06511at 295.904 kb on - strand, within MPMX19_06511at 295.904 kb on - strand, within MPMX19_06511at 295.904 kb on - strand, within MPMX19_06511at 295.904 kb on - strand, within MPMX19_06511at 295.904 kb on - strand, within MPMX19_06511at 295.966 kb on + strand, within MPMX19_06511at 295.966 kb on + strand, within MPMX19_06511at 295.966 kb on + strand, within MPMX19_06511at 295.966 kb on + strand, within MPMX19_06511at 295.966 kb on + strand, within MPMX19_06511at 295.966 kb on + strand, within MPMX19_06511at 295.966 kb on + strand, within MPMX19_06511at 295.966 kb on + strand, within MPMX19_06511at 295.966 kb on + strand, within MPMX19_06511at 295.966 kb on + strand, within MPMX19_06511at 295.967 kb on - strand, within MPMX19_06511at 295.967 kb on - strand, within MPMX19_06511at 295.967 kb on - strand, within MPMX19_06511at 295.967 kb on - strand, within MPMX19_06511at 295.967 kb on - strand, within MPMX19_06511at 295.967 kb on - strand, within MPMX19_06511at 295.967 kb on - strand, within MPMX19_06511at 295.967 kb on - strand, within MPMX19_06511at 295.967 kb on - strand, within MPMX19_06511at 295.967 kb on - strand, within MPMX19_06511at 295.967 kb on - strand, within MPMX19_06511at 295.967 kb on - strand, within MPMX19_06511at 295.967 kb on - strand, within MPMX19_06511at 295.967 kb on - strand, within MPMX19_06511at 296.313 kb on + strandat 296.602 kb on - strand, within MPMX19_06512at 296.602 kb on - strand, within MPMX19_06512at 296.602 kb on - strand, within MPMX19_06512at 296.602 kb on - strand, within MPMX19_06512at 296.677 kb on - strand, within MPMX19_06512at 296.679 kb on - strand, within MPMX19_06512at 296.679 kb on - strand, within MPMX19_06512at 296.679 kb on - strand, within MPMX19_06512at 296.756 kb on + strand, within MPMX19_06512at 296.756 kb on + strand, within MPMX19_06512at 296.756 kb on + strand, within MPMX19_06512at 296.756 kb on + strand, within MPMX19_06512at 296.756 kb on + strand, within MPMX19_06512at 296.756 kb on + strand, within MPMX19_06512at 296.756 kb on + strand, within MPMX19_06512at 296.756 kb on + strand, within MPMX19_06512at 296.756 kb on + strand, within MPMX19_06512at 296.756 kb on + strand, within MPMX19_06512at 296.756 kb on + strand, within MPMX19_06512at 296.756 kb on + strand, within MPMX19_06512at 296.756 kb on + strand, within MPMX19_06512at 296.756 kb on + strand, within MPMX19_06512at 296.756 kb on + strand, within MPMX19_06512at 296.756 kb on + strand, within MPMX19_06512at 296.756 kb on + strand, within MPMX19_06512at 296.756 kb on + strand, within MPMX19_06512at 296.756 kb on + strand, within MPMX19_06512at 296.756 kb on + strand, within MPMX19_06512at 296.756 kb on + strand, within MPMX19_06512at 296.756 kb on + strand, within MPMX19_06512at 296.756 kb on + strand, within MPMX19_06512at 296.756 kb on + strand, within MPMX19_06512at 296.756 kb on + strand, within MPMX19_06512at 296.756 kb on + strand, within MPMX19_06512at 296.756 kb on + strand, within MPMX19_06512at 296.756 kb on + strand, within MPMX19_06512at 296.756 kb on + strand, within MPMX19_06512at 296.757 kb on - strand, within MPMX19_06512at 296.757 kb on - strand, within MPMX19_06512at 296.757 kb on - strand, within MPMX19_06512at 296.757 kb on - strand, within MPMX19_06512at 296.757 kb on - strand, within MPMX19_06512at 296.757 kb on - strand, within MPMX19_06512at 296.757 kb on - strand, within MPMX19_06512at 296.757 kb on - strand, within MPMX19_06512at 296.757 kb on - strand, within MPMX19_06512at 296.757 kb on - strand, within MPMX19_06512at 296.757 kb on - strand, within MPMX19_06512at 296.757 kb on - strand, within MPMX19_06512at 296.757 kb on - strand, within MPMX19_06512at 296.757 kb on - strand, within MPMX19_06512at 296.757 kb on - strand, within MPMX19_06512at 296.757 kb on - strand, within MPMX19_06512at 296.757 kb on - strand, within MPMX19_06512at 296.757 kb on - strand, within MPMX19_06512at 296.757 kb on - strand, within MPMX19_06512at 296.757 kb on - strand, within MPMX19_06512at 296.757 kb on - strand, within MPMX19_06512at 296.757 kb on - strand, within MPMX19_06512at 296.757 kb on - strand, within MPMX19_06512at 296.757 kb on - strand, within MPMX19_06512at 296.757 kb on - strand, within MPMX19_06512at 296.757 kb on - strand, within MPMX19_06512at 296.757 kb on - strand, within MPMX19_06512at 296.757 kb on - strand, within MPMX19_06512at 297.099 kb on + strand, within MPMX19_06512at 297.099 kb on + strand, within MPMX19_06512at 297.100 kb on - strand, within MPMX19_06512at 297.100 kb on - strand, within MPMX19_06512at 297.339 kb on + strand, within MPMX19_06512at 297.480 kb on + strand, within MPMX19_06512at 297.480 kb on + strand, within MPMX19_06512at 297.480 kb on + strand, within MPMX19_06512at 297.480 kb on + strand, within MPMX19_06512at 297.481 kb on - strand, within MPMX19_06512at 297.481 kb on - strand, within MPMX19_06512at 297.481 kb on - strand, within MPMX19_06512at 297.501 kb on + strand, within MPMX19_06512at 297.855 kb on + strand, within MPMX19_06512at 297.855 kb on + strand, within MPMX19_06512at 298.173 kb on + strand, within MPMX19_06512at 298.173 kb on + strand, within MPMX19_06512at 298.173 kb on + strand, within MPMX19_06512at 298.374 kb on + strandat 298.374 kb on + strandat 298.374 kb on + strandat 298.375 kb on - strandat 298.375 kb on - strandat 298.375 kb on - strandat 298.375 kb on - strandat 298.696 kb on + strandat 298.696 kb on + strandat 298.696 kb on + strandat 298.697 kb on - strandat 298.697 kb on - strandat 298.697 kb on - strandat 298.697 kb on - strandat 298.697 kb on - strandat 298.697 kb on - strandat 298.697 kb on - strandat 298.697 kb on - strandat 298.697 kb on - strandat 298.807 kb on + strand, within MPMX19_06513at 298.807 kb on + strand, within MPMX19_06513at 298.807 kb on + strand, within MPMX19_06513at 298.807 kb on + strand, within MPMX19_06513at 298.807 kb on + strand, within MPMX19_06513at 298.808 kb on - strand, within MPMX19_06513at 298.808 kb on - strand, within MPMX19_06513at 298.808 kb on - strand, within MPMX19_06513at 298.808 kb on - strand, within MPMX19_06513at 298.808 kb on - strand, within MPMX19_06513at 298.808 kb on - strand, within MPMX19_06513at 298.808 kb on - strand, within MPMX19_06513at 298.975 kb on + strand, within MPMX19_06513at 298.975 kb on + strand, within MPMX19_06513at 298.975 kb on + strand, within MPMX19_06513at 298.976 kb on - strand, within MPMX19_06513at 299.026 kb on + strand, within MPMX19_06513at 299.026 kb on + strand, within MPMX19_06513at 299.026 kb on + strand, within MPMX19_06513at 299.026 kb on + strand, within MPMX19_06513at 299.026 kb on + strand, within MPMX19_06513at 299.027 kb on - strand, within MPMX19_06513at 299.027 kb on - strand, within MPMX19_06513at 299.110 kb on + strand, within MPMX19_06513at 299.110 kb on + strand, within MPMX19_06513at 299.110 kb on + strand, within MPMX19_06513at 299.111 kb on - strand, within MPMX19_06513at 299.152 kb on + strand, within MPMX19_06513at 299.152 kb on + strand, within MPMX19_06513at 299.152 kb on + strand, within MPMX19_06513at 299.152 kb on + strand, within MPMX19_06513at 299.153 kb on - strand, within MPMX19_06513at 299.153 kb on - strand, within MPMX19_06513at 299.153 kb on - strand, within MPMX19_06513at 299.153 kb on - strand, within MPMX19_06513at 299.221 kb on - strand, within MPMX19_06513at 299.384 kb on - strand, within MPMX19_06513at 299.384 kb on - strand, within MPMX19_06513at 299.392 kb on + strand, within MPMX19_06513at 299.393 kb on - strand, within MPMX19_06513

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; high oxygen
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295,346 + MPMX19_06511 0.11 -1.9
295,347 - MPMX19_06511 0.11 -1.8
295,396 - MPMX19_06511 0.16 -1.6
295,396 - MPMX19_06511 0.16 -2.8
295,640 - MPMX19_06511 0.39 -0.5
295,808 - MPMX19_06511 0.55 +0.4
295,808 - MPMX19_06511 0.55 -1.3
295,904 - MPMX19_06511 0.65 -0.1
295,904 - MPMX19_06511 0.65 +0.4
295,904 - MPMX19_06511 0.65 -0.9
295,904 - MPMX19_06511 0.65 -0.3
295,904 - MPMX19_06511 0.65 +0.4
295,904 - MPMX19_06511 0.65 -0.5
295,966 + MPMX19_06511 0.71 -0.1
295,966 + MPMX19_06511 0.71 +0.1
295,966 + MPMX19_06511 0.71 -1.1
295,966 + MPMX19_06511 0.71 +0.5
295,966 + MPMX19_06511 0.71 +0.5
295,966 + MPMX19_06511 0.71 -0.5
295,966 + MPMX19_06511 0.71 -2.0
295,966 + MPMX19_06511 0.71 -0.6
295,966 + MPMX19_06511 0.71 +0.2
295,966 + MPMX19_06511 0.71 -0.4
295,967 - MPMX19_06511 0.71 +0.4
295,967 - MPMX19_06511 0.71 -0.0
295,967 - MPMX19_06511 0.71 -0.2
295,967 - MPMX19_06511 0.71 -0.3
295,967 - MPMX19_06511 0.71 +1.1
295,967 - MPMX19_06511 0.71 -0.1
295,967 - MPMX19_06511 0.71 +1.3
295,967 - MPMX19_06511 0.71 -0.4
295,967 - MPMX19_06511 0.71 +0.0
295,967 - MPMX19_06511 0.71 -0.8
295,967 - MPMX19_06511 0.71 -0.3
295,967 - MPMX19_06511 0.71 -1.1
295,967 - MPMX19_06511 0.71 -0.6
295,967 - MPMX19_06511 0.71 +0.2
296,313 + -0.8
296,602 - MPMX19_06512 0.14 -0.9
296,602 - MPMX19_06512 0.14 -1.3
296,602 - MPMX19_06512 0.14 +0.3
296,602 - MPMX19_06512 0.14 +0.7
296,677 - MPMX19_06512 0.18 +0.2
296,679 - MPMX19_06512 0.18 +0.7
296,679 - MPMX19_06512 0.18 +0.1
296,679 - MPMX19_06512 0.18 +0.5
296,756 + MPMX19_06512 0.21 -0.0
296,756 + MPMX19_06512 0.21 -0.2
296,756 + MPMX19_06512 0.21 -0.7
296,756 + MPMX19_06512 0.21 -0.2
296,756 + MPMX19_06512 0.21 +0.6
296,756 + MPMX19_06512 0.21 -0.3
296,756 + MPMX19_06512 0.21 -0.1
296,756 + MPMX19_06512 0.21 +1.0
296,756 + MPMX19_06512 0.21 +0.4
296,756 + MPMX19_06512 0.21 -0.3
296,756 + MPMX19_06512 0.21 -0.3
296,756 + MPMX19_06512 0.21 -0.4
296,756 + MPMX19_06512 0.21 -0.4
296,756 + MPMX19_06512 0.21 +0.4
296,756 + MPMX19_06512 0.21 -0.6
296,756 + MPMX19_06512 0.21 -0.0
296,756 + MPMX19_06512 0.21 +0.7
296,756 + MPMX19_06512 0.21 -0.9
296,756 + MPMX19_06512 0.21 -1.5
296,756 + MPMX19_06512 0.21 +0.5
296,756 + MPMX19_06512 0.21 -1.1
296,756 + MPMX19_06512 0.21 -0.1
296,756 + MPMX19_06512 0.21 -1.9
296,756 + MPMX19_06512 0.21 +0.7
296,756 + MPMX19_06512 0.21 +0.9
296,756 + MPMX19_06512 0.21 -1.7
296,756 + MPMX19_06512 0.21 +0.8
296,756 + MPMX19_06512 0.21 -1.3
296,756 + MPMX19_06512 0.21 -0.1
296,757 - MPMX19_06512 0.21 +0.8
296,757 - MPMX19_06512 0.21 +0.1
296,757 - MPMX19_06512 0.21 -0.2
296,757 - MPMX19_06512 0.21 -0.9
296,757 - MPMX19_06512 0.21 -0.2
296,757 - MPMX19_06512 0.21 +0.1
296,757 - MPMX19_06512 0.21 -0.5
296,757 - MPMX19_06512 0.21 +0.1
296,757 - MPMX19_06512 0.21 -0.3
296,757 - MPMX19_06512 0.21 -1.2
296,757 - MPMX19_06512 0.21 +1.0
296,757 - MPMX19_06512 0.21 -0.1
296,757 - MPMX19_06512 0.21 -0.2
296,757 - MPMX19_06512 0.21 +0.9
296,757 - MPMX19_06512 0.21 +0.7
296,757 - MPMX19_06512 0.21 -0.2
296,757 - MPMX19_06512 0.21 +0.5
296,757 - MPMX19_06512 0.21 +0.8
296,757 - MPMX19_06512 0.21 +0.0
296,757 - MPMX19_06512 0.21 +0.5
296,757 - MPMX19_06512 0.21 -1.9
296,757 - MPMX19_06512 0.21 -0.3
296,757 - MPMX19_06512 0.21 -0.9
296,757 - MPMX19_06512 0.21 -1.3
296,757 - MPMX19_06512 0.21 +0.1
296,757 - MPMX19_06512 0.21 -0.7
296,757 - MPMX19_06512 0.21 -1.3
296,757 - MPMX19_06512 0.21 -0.5
297,099 + MPMX19_06512 0.36 -0.1
297,099 + MPMX19_06512 0.36 +0.5
297,100 - MPMX19_06512 0.36 +0.0
297,100 - MPMX19_06512 0.36 -0.2
297,339 + MPMX19_06512 0.46 +0.3
297,480 + MPMX19_06512 0.53 +0.8
297,480 + MPMX19_06512 0.53 -0.2
297,480 + MPMX19_06512 0.53 +1.2
297,480 + MPMX19_06512 0.53 -1.6
297,481 - MPMX19_06512 0.53 +1.0
297,481 - MPMX19_06512 0.53 +0.7
297,481 - MPMX19_06512 0.53 -0.8
297,501 + MPMX19_06512 0.53 +1.0
297,855 + MPMX19_06512 0.69 +0.7
297,855 + MPMX19_06512 0.69 +1.1
298,173 + MPMX19_06512 0.83 -0.9
298,173 + MPMX19_06512 0.83 -0.5
298,173 + MPMX19_06512 0.83 -0.4
298,374 + +0.4
298,374 + -0.8
298,374 + -0.3
298,375 - -1.0
298,375 - -0.3
298,375 - -0.3
298,375 - +2.4
298,696 + -0.4
298,696 + -0.8
298,696 + -0.6
298,697 - -0.2
298,697 - -0.8
298,697 - +0.2
298,697 - +0.6
298,697 - +0.1
298,697 - +0.0
298,697 - -0.5
298,697 - +0.3
298,697 - -1.1
298,807 + MPMX19_06513 0.19 -0.9
298,807 + MPMX19_06513 0.19 -0.2
298,807 + MPMX19_06513 0.19 +0.2
298,807 + MPMX19_06513 0.19 +0.1
298,807 + MPMX19_06513 0.19 -0.6
298,808 - MPMX19_06513 0.19 +1.8
298,808 - MPMX19_06513 0.19 +0.7
298,808 - MPMX19_06513 0.19 -1.1
298,808 - MPMX19_06513 0.19 -0.8
298,808 - MPMX19_06513 0.19 +0.5
298,808 - MPMX19_06513 0.19 -0.2
298,808 - MPMX19_06513 0.19 -0.6
298,975 + MPMX19_06513 0.34 +0.1
298,975 + MPMX19_06513 0.34 -0.0
298,975 + MPMX19_06513 0.34 +0.3
298,976 - MPMX19_06513 0.34 +0.8
299,026 + MPMX19_06513 0.38 -0.9
299,026 + MPMX19_06513 0.38 +0.7
299,026 + MPMX19_06513 0.38 -0.1
299,026 + MPMX19_06513 0.38 -0.5
299,026 + MPMX19_06513 0.38 +0.2
299,027 - MPMX19_06513 0.38 +1.5
299,027 - MPMX19_06513 0.38 +1.1
299,110 + MPMX19_06513 0.45 +0.5
299,110 + MPMX19_06513 0.45 -0.3
299,110 + MPMX19_06513 0.45 -0.9
299,111 - MPMX19_06513 0.45 +1.4
299,152 + MPMX19_06513 0.49 -1.6
299,152 + MPMX19_06513 0.49 +0.0
299,152 + MPMX19_06513 0.49 -0.3
299,152 + MPMX19_06513 0.49 +2.9
299,153 - MPMX19_06513 0.49 -2.8
299,153 - MPMX19_06513 0.49 -2.3
299,153 - MPMX19_06513 0.49 -1.2
299,153 - MPMX19_06513 0.49 +0.8
299,221 - MPMX19_06513 0.55 -0.2
299,384 - MPMX19_06513 0.69 -0.1
299,384 - MPMX19_06513 0.69 -0.6
299,392 + MPMX19_06513 0.69 -0.8
299,393 - MPMX19_06513 0.70 -0.0

Or see this region's nucleotide sequence