Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06189

Experiment: NL-CCM; high oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06188 and MPMX19_06189 are separated by 166 nucleotidesMPMX19_06189 and MPMX19_06190 are separated by 44 nucleotidesMPMX19_06190 and MPMX19_06191 are separated by 7 nucleotides MPMX19_06188: MPMX19_06188 - Flagellar biosynthesis protein FlhA, at 377,979 to 380,072 _06188 MPMX19_06189: MPMX19_06189 - HTH-type transcriptional repressor NicR, at 380,239 to 380,700 _06189 MPMX19_06190: MPMX19_06190 - hypothetical protein, at 380,745 to 381,146 _06190 MPMX19_06191: MPMX19_06191 - hypothetical protein, at 381,154 to 381,936 _06191 Position (kb) 380 381Strain fitness (log2 ratio) -2 -1 0 1 2at 379.342 kb on + strand, within MPMX19_06188at 379.342 kb on + strand, within MPMX19_06188at 379.342 kb on + strand, within MPMX19_06188at 379.342 kb on + strand, within MPMX19_06188at 379.343 kb on - strand, within MPMX19_06188at 379.343 kb on - strand, within MPMX19_06188at 379.343 kb on - strand, within MPMX19_06188at 379.343 kb on - strand, within MPMX19_06188at 379.343 kb on - strand, within MPMX19_06188at 379.343 kb on - strand, within MPMX19_06188at 379.343 kb on - strand, within MPMX19_06188at 379.343 kb on - strand, within MPMX19_06188at 379.343 kb on - strand, within MPMX19_06188at 379.343 kb on - strand, within MPMX19_06188at 379.343 kb on - strand, within MPMX19_06188at 379.343 kb on - strand, within MPMX19_06188at 379.343 kb on - strand, within MPMX19_06188at 379.438 kb on - strand, within MPMX19_06188at 379.483 kb on + strand, within MPMX19_06188at 379.484 kb on - strand, within MPMX19_06188at 379.484 kb on - strand, within MPMX19_06188at 379.484 kb on - strand, within MPMX19_06188at 379.484 kb on - strand, within MPMX19_06188at 379.484 kb on - strand, within MPMX19_06188at 379.484 kb on - strand, within MPMX19_06188at 379.484 kb on - strand, within MPMX19_06188at 380.117 kb on + strandat 380.117 kb on + strandat 380.118 kb on - strandat 380.143 kb on + strandat 380.143 kb on + strandat 380.144 kb on - strandat 380.188 kb on - strandat 380.206 kb on + strandat 380.207 kb on - strandat 380.207 kb on - strandat 380.207 kb on - strandat 380.215 kb on - strandat 380.215 kb on - strandat 380.284 kb on + strandat 380.285 kb on - strandat 380.856 kb on + strand, within MPMX19_06190at 380.856 kb on + strand, within MPMX19_06190at 380.856 kb on + strand, within MPMX19_06190at 380.856 kb on + strand, within MPMX19_06190at 380.857 kb on - strand, within MPMX19_06190at 380.857 kb on - strand, within MPMX19_06190at 380.857 kb on - strand, within MPMX19_06190at 380.857 kb on - strand, within MPMX19_06190at 380.857 kb on - strand, within MPMX19_06190at 380.857 kb on - strand, within MPMX19_06190at 380.857 kb on - strand, within MPMX19_06190at 380.857 kb on - strand, within MPMX19_06190at 380.857 kb on - strand, within MPMX19_06190at 380.857 kb on - strand, within MPMX19_06190at 380.857 kb on - strand, within MPMX19_06190at 380.868 kb on + strand, within MPMX19_06190at 380.868 kb on + strand, within MPMX19_06190at 380.889 kb on + strand, within MPMX19_06190at 380.889 kb on + strand, within MPMX19_06190at 380.889 kb on + strand, within MPMX19_06190at 380.889 kb on + strand, within MPMX19_06190at 380.889 kb on + strand, within MPMX19_06190at 380.889 kb on + strand, within MPMX19_06190at 380.889 kb on + strand, within MPMX19_06190at 380.889 kb on + strand, within MPMX19_06190at 380.889 kb on + strand, within MPMX19_06190at 380.889 kb on + strand, within MPMX19_06190at 380.889 kb on + strand, within MPMX19_06190at 380.889 kb on + strand, within MPMX19_06190at 380.889 kb on + strand, within MPMX19_06190at 380.889 kb on + strand, within MPMX19_06190at 380.889 kb on + strand, within MPMX19_06190at 380.889 kb on + strand, within MPMX19_06190at 380.889 kb on + strand, within MPMX19_06190at 380.889 kb on + strand, within MPMX19_06190at 380.889 kb on + strand, within MPMX19_06190at 380.889 kb on + strand, within MPMX19_06190at 380.889 kb on + strand, within MPMX19_06190at 380.889 kb on + strand, within MPMX19_06190at 380.889 kb on + strand, within MPMX19_06190at 380.889 kb on + strand, within MPMX19_06190at 380.889 kb on + strand, within MPMX19_06190at 380.890 kb on - strand, within MPMX19_06190at 380.890 kb on - strand, within MPMX19_06190at 380.890 kb on - strand, within MPMX19_06190at 380.890 kb on - strand, within MPMX19_06190at 380.890 kb on - strand, within MPMX19_06190at 380.890 kb on - strand, within MPMX19_06190at 380.890 kb on - strand, within MPMX19_06190at 380.890 kb on - strand, within MPMX19_06190at 380.890 kb on - strand, within MPMX19_06190at 380.890 kb on - strand, within MPMX19_06190at 380.890 kb on - strand, within MPMX19_06190at 380.890 kb on - strand, within MPMX19_06190at 380.890 kb on - strand, within MPMX19_06190at 380.890 kb on - strand, within MPMX19_06190at 380.890 kb on - strand, within MPMX19_06190at 380.890 kb on - strand, within MPMX19_06190at 380.890 kb on - strand, within MPMX19_06190at 380.890 kb on - strand, within MPMX19_06190at 380.890 kb on - strand, within MPMX19_06190at 380.890 kb on - strand, within MPMX19_06190at 380.890 kb on - strand, within MPMX19_06190at 380.890 kb on - strand, within MPMX19_06190at 380.890 kb on - strand, within MPMX19_06190at 380.890 kb on - strand, within MPMX19_06190at 380.890 kb on - strand, within MPMX19_06190at 380.890 kb on - strand, within MPMX19_06190at 380.890 kb on - strand, within MPMX19_06190at 380.890 kb on - strand, within MPMX19_06190at 380.890 kb on - strand, within MPMX19_06190at 380.890 kb on - strand, within MPMX19_06190at 380.890 kb on - strand, within MPMX19_06190at 380.890 kb on - strand, within MPMX19_06190at 380.890 kb on - strand, within MPMX19_06190at 380.890 kb on - strand, within MPMX19_06190at 380.890 kb on - strand, within MPMX19_06190at 380.892 kb on + strand, within MPMX19_06190at 380.892 kb on + strand, within MPMX19_06190at 380.892 kb on + strand, within MPMX19_06190at 380.892 kb on + strand, within MPMX19_06190at 380.893 kb on - strand, within MPMX19_06190at 380.893 kb on - strand, within MPMX19_06190at 380.893 kb on - strand, within MPMX19_06190at 380.893 kb on - strand, within MPMX19_06190at 380.893 kb on - strand, within MPMX19_06190at 380.893 kb on - strand, within MPMX19_06190at 380.893 kb on - strand, within MPMX19_06190at 381.015 kb on + strand, within MPMX19_06190at 381.015 kb on + strand, within MPMX19_06190at 381.015 kb on + strand, within MPMX19_06190at 381.016 kb on - strand, within MPMX19_06190at 381.021 kb on + strand, within MPMX19_06190at 381.021 kb on + strand, within MPMX19_06190at 381.021 kb on + strand, within MPMX19_06190at 381.021 kb on + strand, within MPMX19_06190at 381.021 kb on + strand, within MPMX19_06190at 381.021 kb on + strand, within MPMX19_06190at 381.021 kb on + strand, within MPMX19_06190at 381.022 kb on - strand, within MPMX19_06190at 381.022 kb on - strand, within MPMX19_06190at 381.022 kb on - strand, within MPMX19_06190at 381.022 kb on - strand, within MPMX19_06190at 381.066 kb on + strand, within MPMX19_06190at 381.066 kb on + strand, within MPMX19_06190at 381.066 kb on + strand, within MPMX19_06190at 381.066 kb on + strand, within MPMX19_06190at 381.066 kb on + strand, within MPMX19_06190at 381.066 kb on + strand, within MPMX19_06190at 381.066 kb on + strand, within MPMX19_06190at 381.066 kb on + strand, within MPMX19_06190at 381.066 kb on + strand, within MPMX19_06190at 381.066 kb on + strand, within MPMX19_06190at 381.066 kb on + strand, within MPMX19_06190at 381.066 kb on + strand, within MPMX19_06190at 381.066 kb on + strand, within MPMX19_06190at 381.067 kb on - strand, within MPMX19_06190at 381.067 kb on - strand, within MPMX19_06190at 381.067 kb on - strand, within MPMX19_06190at 381.067 kb on - strand, within MPMX19_06190at 381.067 kb on - strand, within MPMX19_06190at 381.067 kb on - strand, within MPMX19_06190at 381.067 kb on - strand, within MPMX19_06190at 381.067 kb on - strand, within MPMX19_06190at 381.067 kb on - strand, within MPMX19_06190at 381.099 kb on + strand, within MPMX19_06190at 381.099 kb on + strand, within MPMX19_06190at 381.099 kb on + strand, within MPMX19_06190at 381.099 kb on + strand, within MPMX19_06190at 381.099 kb on + strand, within MPMX19_06190at 381.099 kb on + strand, within MPMX19_06190at 381.099 kb on + strand, within MPMX19_06190at 381.099 kb on + strand, within MPMX19_06190at 381.100 kb on - strand, within MPMX19_06190at 381.100 kb on - strand, within MPMX19_06190at 381.100 kb on - strand, within MPMX19_06190at 381.100 kb on - strand, within MPMX19_06190at 381.100 kb on - strand, within MPMX19_06190at 381.100 kb on - strand, within MPMX19_06190at 381.100 kb on - strand, within MPMX19_06190at 381.100 kb on - strand, within MPMX19_06190at 381.100 kb on - strand, within MPMX19_06190at 381.102 kb on + strand, within MPMX19_06190at 381.290 kb on + strand, within MPMX19_06191at 381.290 kb on + strand, within MPMX19_06191at 381.290 kb on + strand, within MPMX19_06191at 381.440 kb on + strand, within MPMX19_06191at 381.440 kb on + strand, within MPMX19_06191at 381.440 kb on + strand, within MPMX19_06191at 381.441 kb on - strand, within MPMX19_06191at 381.572 kb on + strand, within MPMX19_06191at 381.599 kb on + strand, within MPMX19_06191at 381.599 kb on + strand, within MPMX19_06191at 381.599 kb on + strand, within MPMX19_06191at 381.599 kb on + strand, within MPMX19_06191at 381.599 kb on + strand, within MPMX19_06191at 381.599 kb on + strand, within MPMX19_06191at 381.599 kb on + strand, within MPMX19_06191at 381.600 kb on - strand, within MPMX19_06191at 381.600 kb on - strand, within MPMX19_06191at 381.600 kb on - strand, within MPMX19_06191at 381.600 kb on - strand, within MPMX19_06191at 381.600 kb on - strand, within MPMX19_06191

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; high oxygen
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379,342 + MPMX19_06188 0.65 +0.3
379,342 + MPMX19_06188 0.65 -0.4
379,342 + MPMX19_06188 0.65 -0.4
379,342 + MPMX19_06188 0.65 -0.3
379,343 - MPMX19_06188 0.65 +0.6
379,343 - MPMX19_06188 0.65 +0.9
379,343 - MPMX19_06188 0.65 -1.7
379,343 - MPMX19_06188 0.65 -1.0
379,343 - MPMX19_06188 0.65 +0.5
379,343 - MPMX19_06188 0.65 +0.4
379,343 - MPMX19_06188 0.65 -0.7
379,343 - MPMX19_06188 0.65 -0.4
379,343 - MPMX19_06188 0.65 -1.9
379,343 - MPMX19_06188 0.65 -1.4
379,343 - MPMX19_06188 0.65 -0.1
379,343 - MPMX19_06188 0.65 +0.0
379,343 - MPMX19_06188 0.65 +0.8
379,438 - MPMX19_06188 0.70 +0.1
379,483 + MPMX19_06188 0.72 +0.3
379,484 - MPMX19_06188 0.72 -0.5
379,484 - MPMX19_06188 0.72 +0.9
379,484 - MPMX19_06188 0.72 +0.6
379,484 - MPMX19_06188 0.72 -0.1
379,484 - MPMX19_06188 0.72 -1.3
379,484 - MPMX19_06188 0.72 -0.2
379,484 - MPMX19_06188 0.72 -1.4
380,117 + +0.9
380,117 + -0.8
380,118 - -1.2
380,143 + -0.8
380,143 + +0.1
380,144 - +0.5
380,188 - +0.6
380,206 + +0.8
380,207 - -0.6
380,207 - -1.3
380,207 - -1.8
380,215 - -0.5
380,215 - -0.7
380,284 + -0.9
380,285 - -1.7
380,856 + MPMX19_06190 0.28 -1.4
380,856 + MPMX19_06190 0.28 -0.4
380,856 + MPMX19_06190 0.28 +0.9
380,856 + MPMX19_06190 0.28 -0.5
380,857 - MPMX19_06190 0.28 +0.9
380,857 - MPMX19_06190 0.28 -0.4
380,857 - MPMX19_06190 0.28 -1.4
380,857 - MPMX19_06190 0.28 -0.2
380,857 - MPMX19_06190 0.28 -0.7
380,857 - MPMX19_06190 0.28 -0.2
380,857 - MPMX19_06190 0.28 +0.5
380,857 - MPMX19_06190 0.28 -0.3
380,857 - MPMX19_06190 0.28 +0.2
380,857 - MPMX19_06190 0.28 +2.2
380,857 - MPMX19_06190 0.28 -0.4
380,868 + MPMX19_06190 0.31 -0.4
380,868 + MPMX19_06190 0.31 -1.2
380,889 + MPMX19_06190 0.36 +0.1
380,889 + MPMX19_06190 0.36 -0.4
380,889 + MPMX19_06190 0.36 -0.3
380,889 + MPMX19_06190 0.36 +0.2
380,889 + MPMX19_06190 0.36 -0.4
380,889 + MPMX19_06190 0.36 -1.3
380,889 + MPMX19_06190 0.36 -1.0
380,889 + MPMX19_06190 0.36 -0.7
380,889 + MPMX19_06190 0.36 -0.8
380,889 + MPMX19_06190 0.36 +0.8
380,889 + MPMX19_06190 0.36 -1.7
380,889 + MPMX19_06190 0.36 -0.4
380,889 + MPMX19_06190 0.36 +0.8
380,889 + MPMX19_06190 0.36 -1.0
380,889 + MPMX19_06190 0.36 +0.3
380,889 + MPMX19_06190 0.36 -0.2
380,889 + MPMX19_06190 0.36 -1.2
380,889 + MPMX19_06190 0.36 +0.8
380,889 + MPMX19_06190 0.36 +0.1
380,889 + MPMX19_06190 0.36 +0.2
380,889 + MPMX19_06190 0.36 -0.5
380,889 + MPMX19_06190 0.36 -2.3
380,889 + MPMX19_06190 0.36 -0.9
380,889 + MPMX19_06190 0.36 -0.2
380,889 + MPMX19_06190 0.36 -0.2
380,890 - MPMX19_06190 0.36 +0.4
380,890 - MPMX19_06190 0.36 +0.6
380,890 - MPMX19_06190 0.36 +0.4
380,890 - MPMX19_06190 0.36 +0.6
380,890 - MPMX19_06190 0.36 +0.0
380,890 - MPMX19_06190 0.36 -0.9
380,890 - MPMX19_06190 0.36 -0.9
380,890 - MPMX19_06190 0.36 +0.2
380,890 - MPMX19_06190 0.36 -0.9
380,890 - MPMX19_06190 0.36 +0.3
380,890 - MPMX19_06190 0.36 -1.9
380,890 - MPMX19_06190 0.36 +0.1
380,890 - MPMX19_06190 0.36 -1.8
380,890 - MPMX19_06190 0.36 -0.1
380,890 - MPMX19_06190 0.36 +0.2
380,890 - MPMX19_06190 0.36 +0.1
380,890 - MPMX19_06190 0.36 +0.1
380,890 - MPMX19_06190 0.36 -0.1
380,890 - MPMX19_06190 0.36 -1.0
380,890 - MPMX19_06190 0.36 -0.6
380,890 - MPMX19_06190 0.36 -0.2
380,890 - MPMX19_06190 0.36 +0.1
380,890 - MPMX19_06190 0.36 -1.6
380,890 - MPMX19_06190 0.36 +0.0
380,890 - MPMX19_06190 0.36 -1.8
380,890 - MPMX19_06190 0.36 +0.9
380,890 - MPMX19_06190 0.36 +0.3
380,890 - MPMX19_06190 0.36 -1.3
380,890 - MPMX19_06190 0.36 -0.4
380,890 - MPMX19_06190 0.36 -2.1
380,890 - MPMX19_06190 0.36 +0.2
380,890 - MPMX19_06190 0.36 -1.4
380,890 - MPMX19_06190 0.36 -1.1
380,890 - MPMX19_06190 0.36 -1.9
380,890 - MPMX19_06190 0.36 +0.1
380,892 + MPMX19_06190 0.37 -0.5
380,892 + MPMX19_06190 0.37 -0.5
380,892 + MPMX19_06190 0.37 +0.2
380,892 + MPMX19_06190 0.37 -0.9
380,893 - MPMX19_06190 0.37 +0.9
380,893 - MPMX19_06190 0.37 -0.7
380,893 - MPMX19_06190 0.37 -0.1
380,893 - MPMX19_06190 0.37 +0.2
380,893 - MPMX19_06190 0.37 +0.1
380,893 - MPMX19_06190 0.37 -0.7
380,893 - MPMX19_06190 0.37 +1.2
381,015 + MPMX19_06190 0.67 -2.3
381,015 + MPMX19_06190 0.67 +1.3
381,015 + MPMX19_06190 0.67 +0.5
381,016 - MPMX19_06190 0.67 -1.1
381,021 + MPMX19_06190 0.69 -1.9
381,021 + MPMX19_06190 0.69 +1.1
381,021 + MPMX19_06190 0.69 +0.4
381,021 + MPMX19_06190 0.69 -1.8
381,021 + MPMX19_06190 0.69 -0.3
381,021 + MPMX19_06190 0.69 -0.4
381,021 + MPMX19_06190 0.69 +0.1
381,022 - MPMX19_06190 0.69 -1.3
381,022 - MPMX19_06190 0.69 -0.4
381,022 - MPMX19_06190 0.69 +0.7
381,022 - MPMX19_06190 0.69 +1.1
381,066 + MPMX19_06190 0.80 +0.1
381,066 + MPMX19_06190 0.80 -0.9
381,066 + MPMX19_06190 0.80 +0.4
381,066 + MPMX19_06190 0.80 -0.7
381,066 + MPMX19_06190 0.80 +0.2
381,066 + MPMX19_06190 0.80 +0.4
381,066 + MPMX19_06190 0.80 +0.1
381,066 + MPMX19_06190 0.80 -1.0
381,066 + MPMX19_06190 0.80 +0.2
381,066 + MPMX19_06190 0.80 -1.4
381,066 + MPMX19_06190 0.80 -1.0
381,066 + MPMX19_06190 0.80 -0.4
381,066 + MPMX19_06190 0.80 -0.2
381,067 - MPMX19_06190 0.80 -1.1
381,067 - MPMX19_06190 0.80 +1.3
381,067 - MPMX19_06190 0.80 +0.5
381,067 - MPMX19_06190 0.80 -1.1
381,067 - MPMX19_06190 0.80 -0.2
381,067 - MPMX19_06190 0.80 +2.6
381,067 - MPMX19_06190 0.80 +0.8
381,067 - MPMX19_06190 0.80 -0.6
381,067 - MPMX19_06190 0.80 -1.9
381,099 + MPMX19_06190 0.88 +0.8
381,099 + MPMX19_06190 0.88 +1.0
381,099 + MPMX19_06190 0.88 +0.6
381,099 + MPMX19_06190 0.88 -0.3
381,099 + MPMX19_06190 0.88 -0.2
381,099 + MPMX19_06190 0.88 +0.5
381,099 + MPMX19_06190 0.88 +2.2
381,099 + MPMX19_06190 0.88 +0.1
381,100 - MPMX19_06190 0.88 +0.5
381,100 - MPMX19_06190 0.88 +0.5
381,100 - MPMX19_06190 0.88 -0.1
381,100 - MPMX19_06190 0.88 +0.8
381,100 - MPMX19_06190 0.88 -1.8
381,100 - MPMX19_06190 0.88 -0.8
381,100 - MPMX19_06190 0.88 -2.7
381,100 - MPMX19_06190 0.88 -0.2
381,100 - MPMX19_06190 0.88 +1.6
381,102 + MPMX19_06190 0.89 -1.8
381,290 + MPMX19_06191 0.17 -1.4
381,290 + MPMX19_06191 0.17 -0.2
381,290 + MPMX19_06191 0.17 +1.1
381,440 + MPMX19_06191 0.37 -0.2
381,440 + MPMX19_06191 0.37 -0.5
381,440 + MPMX19_06191 0.37 -2.4
381,441 - MPMX19_06191 0.37 -0.8
381,572 + MPMX19_06191 0.53 -0.3
381,599 + MPMX19_06191 0.57 +1.3
381,599 + MPMX19_06191 0.57 -0.3
381,599 + MPMX19_06191 0.57 -0.6
381,599 + MPMX19_06191 0.57 -1.9
381,599 + MPMX19_06191 0.57 -1.4
381,599 + MPMX19_06191 0.57 -0.6
381,599 + MPMX19_06191 0.57 +0.1
381,600 - MPMX19_06191 0.57 +0.9
381,600 - MPMX19_06191 0.57 +0.1
381,600 - MPMX19_06191 0.57 +0.1
381,600 - MPMX19_06191 0.57 +0.3
381,600 - MPMX19_06191 0.57 -0.2

Or see this region's nucleotide sequence