Experiment: NL-CCM; high oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05619 and MPMX19_05620 are separated by 49 nucleotides MPMX19_05620 and MPMX19_05621 overlap by 14 nucleotides MPMX19_05621 and MPMX19_05622 are separated by 63 nucleotides
MPMX19_05619: MPMX19_05619 - Aminopyrimidine aminohydrolase, at 333,689 to 334,375
_05619
MPMX19_05620: MPMX19_05620 - hypothetical protein, at 334,425 to 335,264
_05620
MPMX19_05621: MPMX19_05621 - ABC transporter ATP-binding protein NatA, at 335,251 to 336,078
_05621
MPMX19_05622: MPMX19_05622 - Sensor histidine kinase RegB, at 336,142 to 337,536
_05622
Position (kb) 335
336
337 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 334.302 kb on + strand, within MPMX19_05619 at 334.302 kb on + strand, within MPMX19_05619 at 334.302 kb on + strand, within MPMX19_05619 at 334.302 kb on + strand, within MPMX19_05619 at 334.302 kb on + strand, within MPMX19_05619 at 334.302 kb on + strand, within MPMX19_05619 at 334.302 kb on + strand, within MPMX19_05619 at 334.302 kb on + strand, within MPMX19_05619 at 334.302 kb on + strand, within MPMX19_05619 at 334.302 kb on + strand, within MPMX19_05619 at 334.302 kb on + strand, within MPMX19_05619 at 334.303 kb on - strand, within MPMX19_05619 at 334.303 kb on - strand, within MPMX19_05619 at 334.303 kb on - strand, within MPMX19_05619 at 334.303 kb on - strand, within MPMX19_05619 at 334.303 kb on - strand, within MPMX19_05619 at 334.419 kb on + strand at 334.420 kb on - strand at 334.420 kb on - strand at 334.477 kb on + strand at 334.477 kb on + strand at 334.477 kb on + strand at 334.477 kb on + strand at 334.477 kb on + strand at 334.477 kb on + strand at 334.477 kb on + strand at 334.477 kb on + strand at 334.477 kb on + strand at 334.477 kb on + strand at 334.477 kb on + strand at 334.477 kb on + strand at 334.477 kb on + strand at 334.478 kb on - strand at 334.478 kb on - strand at 334.478 kb on - strand at 334.478 kb on - strand at 334.478 kb on - strand at 334.507 kb on + strand at 334.507 kb on + strand at 334.507 kb on + strand at 334.507 kb on + strand at 334.507 kb on + strand at 334.507 kb on + strand at 334.507 kb on + strand at 334.507 kb on + strand at 334.507 kb on + strand at 334.507 kb on + strand at 334.507 kb on + strand at 334.507 kb on + strand at 334.507 kb on + strand at 334.507 kb on + strand at 334.507 kb on + strand at 334.508 kb on - strand at 334.508 kb on - strand at 334.508 kb on - strand at 334.508 kb on - strand at 334.508 kb on - strand at 334.508 kb on - strand at 334.508 kb on - strand at 334.508 kb on - strand at 334.508 kb on - strand at 334.508 kb on - strand at 334.508 kb on - strand at 334.508 kb on - strand at 334.508 kb on - strand at 334.508 kb on - strand at 334.508 kb on - strand at 334.508 kb on - strand at 334.508 kb on - strand at 334.508 kb on - strand at 334.508 kb on - strand at 334.508 kb on - strand at 334.654 kb on + strand, within MPMX19_05620 at 334.654 kb on + strand, within MPMX19_05620 at 334.655 kb on - strand, within MPMX19_05620 at 334.655 kb on - strand, within MPMX19_05620 at 334.657 kb on + strand, within MPMX19_05620 at 334.657 kb on + strand, within MPMX19_05620 at 334.657 kb on + strand, within MPMX19_05620 at 334.657 kb on + strand, within MPMX19_05620 at 334.657 kb on + strand, within MPMX19_05620 at 334.657 kb on + strand, within MPMX19_05620 at 334.657 kb on + strand, within MPMX19_05620 at 334.657 kb on + strand, within MPMX19_05620 at 334.658 kb on - strand, within MPMX19_05620 at 334.658 kb on - strand, within MPMX19_05620 at 334.658 kb on - strand, within MPMX19_05620 at 334.658 kb on - strand, within MPMX19_05620 at 334.658 kb on - strand, within MPMX19_05620 at 334.658 kb on - strand, within MPMX19_05620 at 334.658 kb on - strand, within MPMX19_05620 at 334.658 kb on - strand, within MPMX19_05620 at 334.658 kb on - strand, within MPMX19_05620 at 334.658 kb on - strand, within MPMX19_05620 at 334.724 kb on - strand, within MPMX19_05620 at 334.724 kb on - strand, within MPMX19_05620 at 334.825 kb on + strand, within MPMX19_05620 at 335.110 kb on + strand, within MPMX19_05620 at 335.110 kb on + strand, within MPMX19_05620 at 335.111 kb on - strand, within MPMX19_05620 at 335.111 kb on - strand, within MPMX19_05620 at 335.111 kb on - strand, within MPMX19_05620 at 335.111 kb on - strand, within MPMX19_05620 at 335.111 kb on - strand, within MPMX19_05620 at 335.143 kb on + strand, within MPMX19_05620 at 335.143 kb on + strand, within MPMX19_05620 at 335.143 kb on + strand, within MPMX19_05620 at 335.143 kb on + strand, within MPMX19_05620 at 335.143 kb on + strand, within MPMX19_05620 at 335.144 kb on - strand, within MPMX19_05620 at 335.144 kb on - strand, within MPMX19_05620 at 335.144 kb on - strand, within MPMX19_05620 at 335.144 kb on - strand, within MPMX19_05620 at 335.185 kb on + strand at 335.185 kb on + strand at 335.185 kb on + strand at 335.185 kb on + strand at 335.185 kb on + strand at 335.185 kb on + strand at 335.185 kb on + strand at 335.185 kb on + strand at 335.185 kb on + strand at 335.186 kb on - strand at 335.186 kb on - strand at 335.186 kb on - strand at 335.186 kb on - strand at 335.186 kb on - strand at 335.186 kb on - strand at 335.186 kb on - strand at 335.186 kb on - strand at 335.186 kb on - strand at 335.186 kb on - strand at 335.186 kb on - strand at 335.191 kb on + strand at 335.192 kb on - strand at 335.495 kb on + strand, within MPMX19_05621 at 335.495 kb on + strand, within MPMX19_05621 at 335.495 kb on + strand, within MPMX19_05621 at 335.495 kb on + strand, within MPMX19_05621 at 335.495 kb on + strand, within MPMX19_05621 at 335.495 kb on + strand, within MPMX19_05621 at 335.496 kb on - strand, within MPMX19_05621 at 335.496 kb on - strand, within MPMX19_05621 at 335.496 kb on - strand, within MPMX19_05621 at 335.496 kb on - strand, within MPMX19_05621 at 335.496 kb on - strand, within MPMX19_05621 at 335.496 kb on - strand, within MPMX19_05621 at 335.496 kb on - strand, within MPMX19_05621 at 335.496 kb on - strand, within MPMX19_05621 at 335.706 kb on - strand, within MPMX19_05621 at 335.717 kb on + strand, within MPMX19_05621 at 335.717 kb on + strand, within MPMX19_05621 at 335.717 kb on + strand, within MPMX19_05621 at 335.717 kb on + strand, within MPMX19_05621 at 335.717 kb on + strand, within MPMX19_05621 at 335.718 kb on - strand, within MPMX19_05621 at 335.718 kb on - strand, within MPMX19_05621 at 335.718 kb on - strand, within MPMX19_05621 at 335.718 kb on - strand, within MPMX19_05621 at 335.718 kb on - strand, within MPMX19_05621 at 335.718 kb on - strand, within MPMX19_05621 at 335.718 kb on - strand, within MPMX19_05621 at 335.724 kb on + strand, within MPMX19_05621 at 335.725 kb on - strand, within MPMX19_05621 at 335.725 kb on - strand, within MPMX19_05621 at 335.765 kb on + strand, within MPMX19_05621 at 335.765 kb on + strand, within MPMX19_05621 at 335.765 kb on + strand, within MPMX19_05621 at 335.765 kb on + strand, within MPMX19_05621 at 335.765 kb on + strand, within MPMX19_05621 at 335.766 kb on - strand, within MPMX19_05621 at 335.766 kb on - strand, within MPMX19_05621 at 335.766 kb on - strand, within MPMX19_05621 at 335.766 kb on - strand, within MPMX19_05621 at 336.089 kb on + strand at 336.089 kb on + strand at 336.089 kb on + strand at 336.089 kb on + strand at 336.089 kb on + strand at 336.089 kb on + strand at 336.090 kb on - strand at 336.090 kb on - strand at 336.090 kb on - strand at 336.090 kb on - strand at 336.090 kb on - strand at 336.090 kb on - strand at 336.090 kb on - strand at 336.090 kb on - strand at 336.427 kb on + strand, within MPMX19_05622 at 336.427 kb on + strand, within MPMX19_05622 at 336.427 kb on + strand, within MPMX19_05622 at 336.427 kb on + strand, within MPMX19_05622 at 336.427 kb on + strand, within MPMX19_05622 at 336.428 kb on - strand, within MPMX19_05622 at 336.428 kb on - strand, within MPMX19_05622 at 336.428 kb on - strand, within MPMX19_05622 at 336.428 kb on - strand, within MPMX19_05622 at 336.428 kb on - strand, within MPMX19_05622 at 336.428 kb on - strand, within MPMX19_05622 at 336.428 kb on - strand, within MPMX19_05622 at 336.428 kb on - strand, within MPMX19_05622 at 336.428 kb on - strand, within MPMX19_05622 at 336.428 kb on - strand, within MPMX19_05622 at 336.436 kb on + strand, within MPMX19_05622 at 336.436 kb on + strand, within MPMX19_05622 at 336.436 kb on + strand, within MPMX19_05622 at 336.436 kb on + strand, within MPMX19_05622 at 336.436 kb on + strand, within MPMX19_05622 at 336.436 kb on + strand, within MPMX19_05622 at 336.436 kb on + strand, within MPMX19_05622 at 336.437 kb on - strand, within MPMX19_05622 at 336.437 kb on - strand, within MPMX19_05622 at 336.437 kb on - strand, within MPMX19_05622 at 336.437 kb on - strand, within MPMX19_05622 at 336.437 kb on - strand, within MPMX19_05622 at 336.437 kb on - strand, within MPMX19_05622 at 336.437 kb on - strand, within MPMX19_05622 at 336.437 kb on - strand, within MPMX19_05622 at 336.437 kb on - strand, within MPMX19_05622 at 336.437 kb on - strand, within MPMX19_05622 at 336.439 kb on - strand, within MPMX19_05622 at 336.466 kb on + strand, within MPMX19_05622 at 336.466 kb on + strand, within MPMX19_05622 at 336.466 kb on + strand, within MPMX19_05622 at 336.466 kb on + strand, within MPMX19_05622 at 336.467 kb on - strand, within MPMX19_05622 at 336.467 kb on - strand, within MPMX19_05622 at 336.467 kb on - strand, within MPMX19_05622 at 336.467 kb on - strand, within MPMX19_05622 at 336.467 kb on - strand, within MPMX19_05622 at 336.547 kb on + strand, within MPMX19_05622 at 336.548 kb on - strand, within MPMX19_05622 at 336.655 kb on + strand, within MPMX19_05622 at 336.655 kb on + strand, within MPMX19_05622 at 336.655 kb on + strand, within MPMX19_05622 at 336.655 kb on + strand, within MPMX19_05622 at 336.655 kb on + strand, within MPMX19_05622 at 336.656 kb on - strand, within MPMX19_05622 at 336.656 kb on - strand, within MPMX19_05622 at 336.656 kb on - strand, within MPMX19_05622 at 336.656 kb on - strand, within MPMX19_05622 at 336.656 kb on - strand, within MPMX19_05622 at 336.656 kb on - strand, within MPMX19_05622 at 336.656 kb on - strand, within MPMX19_05622 at 336.709 kb on + strand, within MPMX19_05622 at 336.709 kb on + strand, within MPMX19_05622 at 336.709 kb on + strand, within MPMX19_05622 at 336.709 kb on + strand, within MPMX19_05622 at 336.709 kb on + strand, within MPMX19_05622 at 336.710 kb on - strand, within MPMX19_05622 at 336.710 kb on - strand, within MPMX19_05622 at 336.710 kb on - strand, within MPMX19_05622 at 336.710 kb on - strand, within MPMX19_05622 at 336.908 kb on - strand, within MPMX19_05622 at 336.908 kb on - strand, within MPMX19_05622 at 336.908 kb on - strand, within MPMX19_05622 at 336.908 kb on - strand, within MPMX19_05622 at 336.908 kb on - strand, within MPMX19_05622
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; high oxygen remove 334,302 + MPMX19_05619 0.89 +0.6 334,302 + MPMX19_05619 0.89 +0.2 334,302 + MPMX19_05619 0.89 -0.5 334,302 + MPMX19_05619 0.89 +0.3 334,302 + MPMX19_05619 0.89 +0.6 334,302 + MPMX19_05619 0.89 +0.9 334,302 + MPMX19_05619 0.89 +0.4 334,302 + MPMX19_05619 0.89 -0.7 334,302 + MPMX19_05619 0.89 -1.7 334,302 + MPMX19_05619 0.89 -1.6 334,302 + MPMX19_05619 0.89 -0.8 334,303 - MPMX19_05619 0.89 +0.8 334,303 - MPMX19_05619 0.89 -1.7 334,303 - MPMX19_05619 0.89 -0.5 334,303 - MPMX19_05619 0.89 -0.6 334,303 - MPMX19_05619 0.89 -0.4 334,419 + -0.8 334,420 - -1.4 334,420 - +0.4 334,477 + +0.0 334,477 + -0.9 334,477 + +0.2 334,477 + +0.0 334,477 + +2.9 334,477 + -1.1 334,477 + +1.3 334,477 + +1.6 334,477 + +0.0 334,477 + +1.2 334,477 + +0.5 334,477 + -0.5 334,477 + -0.1 334,478 - +1.2 334,478 - -0.3 334,478 - -0.4 334,478 - +0.0 334,478 - -0.4 334,507 + -1.1 334,507 + +0.3 334,507 + -0.7 334,507 + -0.1 334,507 + +0.0 334,507 + +0.1 334,507 + +0.3 334,507 + -0.7 334,507 + -0.1 334,507 + -0.1 334,507 + -1.6 334,507 + -0.6 334,507 + +0.3 334,507 + +0.6 334,507 + -2.3 334,508 - -1.6 334,508 - +0.6 334,508 - +0.2 334,508 - -1.4 334,508 - -0.2 334,508 - -0.3 334,508 - -1.9 334,508 - +0.7 334,508 - -0.7 334,508 - +0.2 334,508 - -0.2 334,508 - +0.7 334,508 - -0.4 334,508 - -1.1 334,508 - -1.6 334,508 - +0.2 334,508 - +0.9 334,508 - +0.4 334,508 - -1.5 334,508 - -0.6 334,654 + MPMX19_05620 0.27 -1.3 334,654 + MPMX19_05620 0.27 -1.2 334,655 - MPMX19_05620 0.27 -0.5 334,655 - MPMX19_05620 0.27 +0.6 334,657 + MPMX19_05620 0.28 -0.2 334,657 + MPMX19_05620 0.28 -0.7 334,657 + MPMX19_05620 0.28 -1.2 334,657 + MPMX19_05620 0.28 -0.6 334,657 + MPMX19_05620 0.28 +0.0 334,657 + MPMX19_05620 0.28 -0.4 334,657 + MPMX19_05620 0.28 -0.1 334,657 + MPMX19_05620 0.28 -0.4 334,658 - MPMX19_05620 0.28 -2.4 334,658 - MPMX19_05620 0.28 -0.7 334,658 - MPMX19_05620 0.28 -0.3 334,658 - MPMX19_05620 0.28 +0.1 334,658 - MPMX19_05620 0.28 +0.0 334,658 - MPMX19_05620 0.28 +0.1 334,658 - MPMX19_05620 0.28 -1.4 334,658 - MPMX19_05620 0.28 -2.0 334,658 - MPMX19_05620 0.28 -0.8 334,658 - MPMX19_05620 0.28 -0.1 334,724 - MPMX19_05620 0.36 -0.6 334,724 - MPMX19_05620 0.36 -0.4 334,825 + MPMX19_05620 0.48 -0.7 335,110 + MPMX19_05620 0.82 +0.0 335,110 + MPMX19_05620 0.82 -2.0 335,111 - MPMX19_05620 0.82 +0.4 335,111 - MPMX19_05620 0.82 -1.5 335,111 - MPMX19_05620 0.82 -1.4 335,111 - MPMX19_05620 0.82 -0.1 335,111 - MPMX19_05620 0.82 -0.2 335,143 + MPMX19_05620 0.85 -0.6 335,143 + MPMX19_05620 0.85 +0.2 335,143 + MPMX19_05620 0.85 +0.2 335,143 + MPMX19_05620 0.85 -2.1 335,143 + MPMX19_05620 0.85 -0.2 335,144 - MPMX19_05620 0.86 -0.3 335,144 - MPMX19_05620 0.86 -1.0 335,144 - MPMX19_05620 0.86 -0.2 335,144 - MPMX19_05620 0.86 -1.1 335,185 + -1.0 335,185 + +0.6 335,185 + -0.1 335,185 + -0.9 335,185 + -1.1 335,185 + +0.5 335,185 + -1.0 335,185 + +0.3 335,185 + -0.5 335,186 - -0.3 335,186 - -1.1 335,186 - +1.9 335,186 - +0.1 335,186 - -0.4 335,186 - -0.7 335,186 - -0.8 335,186 - -0.6 335,186 - -0.6 335,186 - -0.7 335,186 - -1.5 335,191 + +0.0 335,192 - -2.4 335,495 + MPMX19_05621 0.29 -1.0 335,495 + MPMX19_05621 0.29 -1.2 335,495 + MPMX19_05621 0.29 +0.2 335,495 + MPMX19_05621 0.29 -2.4 335,495 + MPMX19_05621 0.29 -0.3 335,495 + MPMX19_05621 0.29 -0.7 335,496 - MPMX19_05621 0.30 -0.1 335,496 - MPMX19_05621 0.30 -2.0 335,496 - MPMX19_05621 0.30 +1.6 335,496 - MPMX19_05621 0.30 -0.4 335,496 - MPMX19_05621 0.30 -0.3 335,496 - MPMX19_05621 0.30 -0.2 335,496 - MPMX19_05621 0.30 +3.0 335,496 - MPMX19_05621 0.30 -0.2 335,706 - MPMX19_05621 0.55 -0.3 335,717 + MPMX19_05621 0.56 -0.5 335,717 + MPMX19_05621 0.56 +0.2 335,717 + MPMX19_05621 0.56 -1.0 335,717 + MPMX19_05621 0.56 +0.8 335,717 + MPMX19_05621 0.56 +0.4 335,718 - MPMX19_05621 0.56 +0.8 335,718 - MPMX19_05621 0.56 -0.4 335,718 - MPMX19_05621 0.56 +0.7 335,718 - MPMX19_05621 0.56 +1.6 335,718 - MPMX19_05621 0.56 +0.1 335,718 - MPMX19_05621 0.56 +1.3 335,718 - MPMX19_05621 0.56 -0.1 335,724 + MPMX19_05621 0.57 -1.0 335,725 - MPMX19_05621 0.57 +1.3 335,725 - MPMX19_05621 0.57 +1.6 335,765 + MPMX19_05621 0.62 -0.4 335,765 + MPMX19_05621 0.62 +1.0 335,765 + MPMX19_05621 0.62 +0.9 335,765 + MPMX19_05621 0.62 -0.4 335,765 + MPMX19_05621 0.62 -0.8 335,766 - MPMX19_05621 0.62 +0.5 335,766 - MPMX19_05621 0.62 +1.6 335,766 - MPMX19_05621 0.62 +0.4 335,766 - MPMX19_05621 0.62 +0.2 336,089 + -1.8 336,089 + -1.7 336,089 + -0.4 336,089 + +0.7 336,089 + -2.0 336,089 + -0.5 336,090 - -0.1 336,090 - +0.4 336,090 - -0.4 336,090 - +0.1 336,090 - -0.9 336,090 - +0.1 336,090 - -0.1 336,090 - +0.6 336,427 + MPMX19_05622 0.20 -0.9 336,427 + MPMX19_05622 0.20 +1.6 336,427 + MPMX19_05622 0.20 -0.2 336,427 + MPMX19_05622 0.20 +0.2 336,427 + MPMX19_05622 0.20 +1.6 336,428 - MPMX19_05622 0.21 -1.0 336,428 - MPMX19_05622 0.21 -0.6 336,428 - MPMX19_05622 0.21 +0.9 336,428 - MPMX19_05622 0.21 +0.8 336,428 - MPMX19_05622 0.21 +0.5 336,428 - MPMX19_05622 0.21 +0.8 336,428 - MPMX19_05622 0.21 +1.2 336,428 - MPMX19_05622 0.21 +0.3 336,428 - MPMX19_05622 0.21 +0.9 336,428 - MPMX19_05622 0.21 -0.2 336,436 + MPMX19_05622 0.21 -1.7 336,436 + MPMX19_05622 0.21 -0.3 336,436 + MPMX19_05622 0.21 +0.6 336,436 + MPMX19_05622 0.21 +2.6 336,436 + MPMX19_05622 0.21 -0.4 336,436 + MPMX19_05622 0.21 +0.4 336,436 + MPMX19_05622 0.21 +0.6 336,437 - MPMX19_05622 0.21 +0.2 336,437 - MPMX19_05622 0.21 -0.1 336,437 - MPMX19_05622 0.21 +0.8 336,437 - MPMX19_05622 0.21 +1.4 336,437 - MPMX19_05622 0.21 +0.3 336,437 - MPMX19_05622 0.21 +0.2 336,437 - MPMX19_05622 0.21 -0.8 336,437 - MPMX19_05622 0.21 -0.4 336,437 - MPMX19_05622 0.21 -0.4 336,437 - MPMX19_05622 0.21 +0.2 336,439 - MPMX19_05622 0.21 -0.4 336,466 + MPMX19_05622 0.23 +0.6 336,466 + MPMX19_05622 0.23 +1.2 336,466 + MPMX19_05622 0.23 +1.1 336,466 + MPMX19_05622 0.23 +1.3 336,467 - MPMX19_05622 0.23 +0.5 336,467 - MPMX19_05622 0.23 +1.2 336,467 - MPMX19_05622 0.23 +1.0 336,467 - MPMX19_05622 0.23 +0.6 336,467 - MPMX19_05622 0.23 -0.2 336,547 + MPMX19_05622 0.29 -0.3 336,548 - MPMX19_05622 0.29 -0.1 336,655 + MPMX19_05622 0.37 +1.1 336,655 + MPMX19_05622 0.37 +0.4 336,655 + MPMX19_05622 0.37 +0.2 336,655 + MPMX19_05622 0.37 +1.6 336,655 + MPMX19_05622 0.37 +0.6 336,656 - MPMX19_05622 0.37 +1.1 336,656 - MPMX19_05622 0.37 +0.6 336,656 - MPMX19_05622 0.37 +1.0 336,656 - MPMX19_05622 0.37 -0.6 336,656 - MPMX19_05622 0.37 +0.4 336,656 - MPMX19_05622 0.37 +0.4 336,656 - MPMX19_05622 0.37 +0.9 336,709 + MPMX19_05622 0.41 -0.0 336,709 + MPMX19_05622 0.41 -0.0 336,709 + MPMX19_05622 0.41 +0.5 336,709 + MPMX19_05622 0.41 +0.4 336,709 + MPMX19_05622 0.41 -0.5 336,710 - MPMX19_05622 0.41 +0.0 336,710 - MPMX19_05622 0.41 +0.6 336,710 - MPMX19_05622 0.41 +0.9 336,710 - MPMX19_05622 0.41 +1.3 336,908 - MPMX19_05622 0.55 +0.3 336,908 - MPMX19_05622 0.55 +0.2 336,908 - MPMX19_05622 0.55 +0.4 336,908 - MPMX19_05622 0.55 +0.2 336,908 - MPMX19_05622 0.55 +0.3
Or see this region's nucleotide sequence