Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05514

Experiment: NL-CCM; high oxygen

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_05513 and MPMX19_05514 are separated by 137 nucleotidesMPMX19_05514 and MPMX19_05515 are separated by 103 nucleotides MPMX19_05513: MPMX19_05513 - 3'3'-cGAMP-specific phosphodiesterase 2, at 218,008 to 219,573 _05513 MPMX19_05514: MPMX19_05514 - 4-hydroxy-tetrahydrodipicolinate reductase, at 219,711 to 220,508 _05514 MPMX19_05515: MPMX19_05515 - High-affinity zinc uptake system protein ZnuA, at 220,612 to 221,583 _05515 Position (kb) 219 220 221Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 218.947 kb on + strand, within MPMX19_05513at 218.947 kb on + strand, within MPMX19_05513at 218.947 kb on + strand, within MPMX19_05513at 218.948 kb on - strand, within MPMX19_05513at 218.948 kb on - strand, within MPMX19_05513at 219.007 kb on + strand, within MPMX19_05513at 219.008 kb on - strand, within MPMX19_05513at 219.008 kb on - strand, within MPMX19_05513at 219.008 kb on - strand, within MPMX19_05513at 219.008 kb on - strand, within MPMX19_05513at 219.008 kb on - strand, within MPMX19_05513at 219.295 kb on + strand, within MPMX19_05513at 219.295 kb on + strand, within MPMX19_05513at 219.295 kb on + strand, within MPMX19_05513at 219.295 kb on + strand, within MPMX19_05513at 219.296 kb on - strand, within MPMX19_05513at 219.296 kb on - strand, within MPMX19_05513at 219.296 kb on - strand, within MPMX19_05513at 219.296 kb on - strand, within MPMX19_05513at 219.296 kb on - strand, within MPMX19_05513at 219.296 kb on - strand, within MPMX19_05513at 219.296 kb on - strand, within MPMX19_05513at 219.296 kb on - strand, within MPMX19_05513at 219.296 kb on - strand, within MPMX19_05513at 219.448 kb on + strandat 219.448 kb on + strandat 219.448 kb on + strandat 219.448 kb on + strandat 219.448 kb on + strandat 219.448 kb on + strandat 219.449 kb on - strandat 219.449 kb on - strandat 219.449 kb on - strandat 219.449 kb on - strandat 219.449 kb on - strandat 219.449 kb on - strandat 219.571 kb on + strandat 219.571 kb on + strandat 219.571 kb on + strandat 219.571 kb on + strandat 219.571 kb on + strandat 219.571 kb on + strandat 219.571 kb on + strandat 219.571 kb on + strandat 219.571 kb on + strandat 219.571 kb on + strandat 219.571 kb on + strandat 219.572 kb on - strandat 219.572 kb on - strandat 219.572 kb on - strandat 219.572 kb on - strandat 219.572 kb on - strandat 219.572 kb on - strandat 219.572 kb on - strandat 219.572 kb on - strandat 219.596 kb on + strandat 219.596 kb on + strandat 219.597 kb on - strandat 219.613 kb on + strandat 219.613 kb on + strandat 219.614 kb on - strandat 219.614 kb on - strandat 219.614 kb on - strandat 219.696 kb on + strandat 219.696 kb on + strandat 219.696 kb on + strandat 220.568 kb on - strandat 220.568 kb on - strandat 220.568 kb on - strandat 220.568 kb on - strandat 220.568 kb on - strandat 220.568 kb on - strandat 220.568 kb on - strandat 220.568 kb on - strandat 220.592 kb on - strandat 220.592 kb on - strandat 220.592 kb on - strandat 220.592 kb on - strandat 220.614 kb on - strandat 220.614 kb on - strandat 220.614 kb on - strandat 220.667 kb on + strandat 220.668 kb on - strandat 220.668 kb on - strandat 220.668 kb on - strandat 220.668 kb on - strandat 220.892 kb on + strand, within MPMX19_05515at 220.892 kb on + strand, within MPMX19_05515at 220.892 kb on + strand, within MPMX19_05515at 220.892 kb on + strand, within MPMX19_05515at 220.893 kb on - strand, within MPMX19_05515at 220.893 kb on - strand, within MPMX19_05515at 220.893 kb on - strand, within MPMX19_05515at 220.893 kb on - strand, within MPMX19_05515at 220.907 kb on + strand, within MPMX19_05515at 220.907 kb on + strand, within MPMX19_05515at 220.907 kb on + strand, within MPMX19_05515at 220.908 kb on - strand, within MPMX19_05515at 220.908 kb on - strand, within MPMX19_05515at 220.913 kb on + strand, within MPMX19_05515at 220.913 kb on + strand, within MPMX19_05515at 220.913 kb on + strand, within MPMX19_05515at 220.913 kb on + strand, within MPMX19_05515at 220.913 kb on + strand, within MPMX19_05515at 220.913 kb on + strand, within MPMX19_05515at 220.913 kb on + strand, within MPMX19_05515at 220.914 kb on - strand, within MPMX19_05515at 220.914 kb on - strand, within MPMX19_05515at 220.914 kb on - strand, within MPMX19_05515at 220.914 kb on - strand, within MPMX19_05515at 220.914 kb on - strand, within MPMX19_05515at 221.024 kb on + strand, within MPMX19_05515at 221.024 kb on + strand, within MPMX19_05515at 221.024 kb on + strand, within MPMX19_05515at 221.024 kb on + strand, within MPMX19_05515at 221.024 kb on + strand, within MPMX19_05515at 221.387 kb on + strand, within MPMX19_05515at 221.387 kb on + strand, within MPMX19_05515at 221.387 kb on + strand, within MPMX19_05515at 221.387 kb on + strand, within MPMX19_05515at 221.387 kb on + strand, within MPMX19_05515at 221.387 kb on + strand, within MPMX19_05515at 221.387 kb on + strand, within MPMX19_05515at 221.387 kb on + strand, within MPMX19_05515at 221.388 kb on - strand, within MPMX19_05515at 221.388 kb on - strand, within MPMX19_05515at 221.388 kb on - strand, within MPMX19_05515at 221.388 kb on - strand, within MPMX19_05515at 221.388 kb on - strand, within MPMX19_05515at 221.388 kb on - strand, within MPMX19_05515at 221.388 kb on - strand, within MPMX19_05515at 221.388 kb on - strand, within MPMX19_05515at 221.388 kb on - strand, within MPMX19_05515at 221.388 kb on - strand, within MPMX19_05515at 221.388 kb on - strand, within MPMX19_05515at 221.388 kb on - strand, within MPMX19_05515at 221.388 kb on - strand, within MPMX19_05515at 221.388 kb on - strand, within MPMX19_05515at 221.388 kb on - strand, within MPMX19_05515at 221.388 kb on - strand, within MPMX19_05515at 221.388 kb on - strand, within MPMX19_05515

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; high oxygen
remove
218,947 + MPMX19_05513 0.60 -0.3
218,947 + MPMX19_05513 0.60 -1.2
218,947 + MPMX19_05513 0.60 -0.4
218,948 - MPMX19_05513 0.60 -0.1
218,948 - MPMX19_05513 0.60 -0.3
219,007 + MPMX19_05513 0.64 -0.1
219,008 - MPMX19_05513 0.64 -1.7
219,008 - MPMX19_05513 0.64 -1.0
219,008 - MPMX19_05513 0.64 -0.7
219,008 - MPMX19_05513 0.64 +0.8
219,008 - MPMX19_05513 0.64 -2.8
219,295 + MPMX19_05513 0.82 +0.3
219,295 + MPMX19_05513 0.82 -1.1
219,295 + MPMX19_05513 0.82 -1.0
219,295 + MPMX19_05513 0.82 +0.1
219,296 - MPMX19_05513 0.82 -1.6
219,296 - MPMX19_05513 0.82 -1.9
219,296 - MPMX19_05513 0.82 -0.2
219,296 - MPMX19_05513 0.82 -0.4
219,296 - MPMX19_05513 0.82 +0.1
219,296 - MPMX19_05513 0.82 -2.0
219,296 - MPMX19_05513 0.82 +0.6
219,296 - MPMX19_05513 0.82 +0.2
219,296 - MPMX19_05513 0.82 +0.0
219,448 + -2.4
219,448 + +0.2
219,448 + -0.1
219,448 + +1.8
219,448 + +0.9
219,448 + -1.3
219,449 - -0.6
219,449 - +0.0
219,449 - +0.1
219,449 - +0.2
219,449 - -1.6
219,449 - +0.3
219,571 + -0.3
219,571 + -1.2
219,571 + -0.1
219,571 + -0.3
219,571 + -1.4
219,571 + -2.0
219,571 + -2.1
219,571 + -0.4
219,571 + -1.2
219,571 + -1.3
219,571 + -1.0
219,572 - +0.9
219,572 - +0.9
219,572 - -0.1
219,572 - +0.7
219,572 - -0.7
219,572 - -0.1
219,572 - -1.5
219,572 - +1.2
219,596 + -0.7
219,596 + -0.2
219,597 - +0.3
219,613 + -0.3
219,613 + +0.6
219,614 - -1.1
219,614 - -1.4
219,614 - +0.7
219,696 + -0.5
219,696 + -0.3
219,696 + -0.2
220,568 - +0.6
220,568 - -1.2
220,568 - -0.5
220,568 - -0.7
220,568 - -2.0
220,568 - -0.9
220,568 - -1.4
220,568 - +0.1
220,592 - -0.6
220,592 - -2.1
220,592 - -0.5
220,592 - -0.3
220,614 - +0.9
220,614 - -1.7
220,614 - -1.2
220,667 + +0.6
220,668 - -1.0
220,668 - -0.1
220,668 - -0.6
220,668 - -3.0
220,892 + MPMX19_05515 0.29 -1.6
220,892 + MPMX19_05515 0.29 -0.5
220,892 + MPMX19_05515 0.29 -2.6
220,892 + MPMX19_05515 0.29 -1.6
220,893 - MPMX19_05515 0.29 -1.6
220,893 - MPMX19_05515 0.29 +0.2
220,893 - MPMX19_05515 0.29 -0.7
220,893 - MPMX19_05515 0.29 +0.0
220,907 + MPMX19_05515 0.30 -0.5
220,907 + MPMX19_05515 0.30 +0.0
220,907 + MPMX19_05515 0.30 -0.5
220,908 - MPMX19_05515 0.30 -1.7
220,908 - MPMX19_05515 0.30 +0.1
220,913 + MPMX19_05515 0.31 -2.4
220,913 + MPMX19_05515 0.31 -1.9
220,913 + MPMX19_05515 0.31 -0.1
220,913 + MPMX19_05515 0.31 -1.3
220,913 + MPMX19_05515 0.31 -0.8
220,913 + MPMX19_05515 0.31 +1.3
220,913 + MPMX19_05515 0.31 -1.0
220,914 - MPMX19_05515 0.31 -0.2
220,914 - MPMX19_05515 0.31 -1.0
220,914 - MPMX19_05515 0.31 -0.5
220,914 - MPMX19_05515 0.31 +0.0
220,914 - MPMX19_05515 0.31 -0.1
221,024 + MPMX19_05515 0.42 -0.2
221,024 + MPMX19_05515 0.42 -0.7
221,024 + MPMX19_05515 0.42 -1.6
221,024 + MPMX19_05515 0.42 -0.1
221,024 + MPMX19_05515 0.42 -0.9
221,387 + MPMX19_05515 0.80 -0.3
221,387 + MPMX19_05515 0.80 +0.1
221,387 + MPMX19_05515 0.80 +0.8
221,387 + MPMX19_05515 0.80 +0.1
221,387 + MPMX19_05515 0.80 +1.6
221,387 + MPMX19_05515 0.80 +0.1
221,387 + MPMX19_05515 0.80 +0.0
221,387 + MPMX19_05515 0.80 -0.4
221,388 - MPMX19_05515 0.80 -0.7
221,388 - MPMX19_05515 0.80 -1.1
221,388 - MPMX19_05515 0.80 -0.2
221,388 - MPMX19_05515 0.80 -0.4
221,388 - MPMX19_05515 0.80 -1.5
221,388 - MPMX19_05515 0.80 +0.4
221,388 - MPMX19_05515 0.80 +1.9
221,388 - MPMX19_05515 0.80 -0.6
221,388 - MPMX19_05515 0.80 -1.0
221,388 - MPMX19_05515 0.80 -1.0
221,388 - MPMX19_05515 0.80 +0.6
221,388 - MPMX19_05515 0.80 -2.3
221,388 - MPMX19_05515 0.80 -0.5
221,388 - MPMX19_05515 0.80 +0.6
221,388 - MPMX19_05515 0.80 -1.2
221,388 - MPMX19_05515 0.80 +0.5
221,388 - MPMX19_05515 0.80 -1.0

Or see this region's nucleotide sequence