Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04941

Experiment: NL-CCM; high oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04940 and MPMX19_04941 overlap by 4 nucleotidesMPMX19_04941 and MPMX19_04942 are separated by 99 nucleotidesMPMX19_04942 and MPMX19_04943 are separated by 4 nucleotides MPMX19_04940: MPMX19_04940 - Histidine ammonia-lyase, at 403,302 to 404,840 _04940 MPMX19_04941: MPMX19_04941 - hypothetical protein, at 404,837 to 405,652 _04941 MPMX19_04942: MPMX19_04942 - hypothetical protein, at 405,752 to 406,402 _04942 MPMX19_04943: MPMX19_04943 - hypothetical protein, at 406,407 to 407,639 _04943 Position (kb) 404 405 406Strain fitness (log2 ratio) -2 -1 0 1at 404.148 kb on + strand, within MPMX19_04940at 404.148 kb on + strand, within MPMX19_04940at 404.149 kb on - strand, within MPMX19_04940at 404.149 kb on - strand, within MPMX19_04940at 404.149 kb on - strand, within MPMX19_04940at 404.627 kb on + strand, within MPMX19_04940at 404.628 kb on - strand, within MPMX19_04940at 404.628 kb on - strand, within MPMX19_04940at 404.629 kb on + strand, within MPMX19_04940at 404.630 kb on - strand, within MPMX19_04940at 404.630 kb on - strand, within MPMX19_04940at 404.630 kb on - strand, within MPMX19_04940at 404.630 kb on - strand, within MPMX19_04940at 404.733 kb on + strandat 404.733 kb on + strandat 404.734 kb on - strandat 404.748 kb on + strandat 404.749 kb on - strandat 404.749 kb on - strandat 404.990 kb on + strand, within MPMX19_04941at 404.990 kb on + strand, within MPMX19_04941at 404.990 kb on + strand, within MPMX19_04941at 404.990 kb on + strand, within MPMX19_04941at 404.991 kb on - strand, within MPMX19_04941at 404.991 kb on - strand, within MPMX19_04941at 404.991 kb on - strand, within MPMX19_04941at 405.035 kb on + strand, within MPMX19_04941at 405.035 kb on + strand, within MPMX19_04941at 405.036 kb on - strand, within MPMX19_04941at 405.044 kb on + strand, within MPMX19_04941at 405.045 kb on - strand, within MPMX19_04941at 405.045 kb on - strand, within MPMX19_04941at 405.045 kb on - strand, within MPMX19_04941at 405.045 kb on - strand, within MPMX19_04941at 405.045 kb on - strand, within MPMX19_04941at 405.045 kb on - strand, within MPMX19_04941at 405.086 kb on + strand, within MPMX19_04941at 405.200 kb on + strand, within MPMX19_04941at 405.200 kb on + strand, within MPMX19_04941at 405.201 kb on - strand, within MPMX19_04941at 405.213 kb on - strand, within MPMX19_04941at 405.213 kb on - strand, within MPMX19_04941at 405.275 kb on + strand, within MPMX19_04941at 405.275 kb on + strand, within MPMX19_04941at 405.275 kb on + strand, within MPMX19_04941at 405.275 kb on + strand, within MPMX19_04941at 405.276 kb on - strand, within MPMX19_04941at 405.276 kb on - strand, within MPMX19_04941at 405.276 kb on - strand, within MPMX19_04941at 405.276 kb on - strand, within MPMX19_04941at 405.276 kb on - strand, within MPMX19_04941at 405.276 kb on - strand, within MPMX19_04941at 405.276 kb on - strand, within MPMX19_04941at 405.276 kb on - strand, within MPMX19_04941at 405.276 kb on - strand, within MPMX19_04941at 405.276 kb on - strand, within MPMX19_04941at 405.276 kb on - strand, within MPMX19_04941at 405.276 kb on - strand, within MPMX19_04941at 405.276 kb on - strand, within MPMX19_04941at 405.276 kb on - strand, within MPMX19_04941at 405.276 kb on - strand, within MPMX19_04941at 405.276 kb on - strand, within MPMX19_04941at 405.276 kb on - strand, within MPMX19_04941at 405.480 kb on - strand, within MPMX19_04941at 405.536 kb on + strand, within MPMX19_04941at 405.536 kb on + strand, within MPMX19_04941at 405.536 kb on + strand, within MPMX19_04941at 405.536 kb on + strand, within MPMX19_04941at 405.537 kb on - strand, within MPMX19_04941at 405.537 kb on - strand, within MPMX19_04941at 405.537 kb on - strand, within MPMX19_04941at 405.537 kb on - strand, within MPMX19_04941at 405.653 kb on + strandat 405.653 kb on + strandat 405.653 kb on + strandat 405.654 kb on - strandat 405.654 kb on - strandat 405.833 kb on + strand, within MPMX19_04942at 405.965 kb on + strand, within MPMX19_04942at 405.965 kb on + strand, within MPMX19_04942at 405.965 kb on + strand, within MPMX19_04942at 405.965 kb on + strand, within MPMX19_04942at 405.965 kb on + strand, within MPMX19_04942at 405.965 kb on + strand, within MPMX19_04942at 405.965 kb on + strand, within MPMX19_04942at 405.965 kb on + strand, within MPMX19_04942at 405.965 kb on + strand, within MPMX19_04942at 405.965 kb on + strand, within MPMX19_04942at 405.966 kb on - strand, within MPMX19_04942at 405.966 kb on - strand, within MPMX19_04942at 405.966 kb on - strand, within MPMX19_04942at 405.966 kb on - strand, within MPMX19_04942at 405.966 kb on - strand, within MPMX19_04942at 405.966 kb on - strand, within MPMX19_04942at 405.966 kb on - strand, within MPMX19_04942at 405.966 kb on - strand, within MPMX19_04942at 405.966 kb on - strand, within MPMX19_04942at 405.972 kb on + strand, within MPMX19_04942at 406.014 kb on + strand, within MPMX19_04942at 406.014 kb on + strand, within MPMX19_04942at 406.014 kb on + strand, within MPMX19_04942at 406.015 kb on - strand, within MPMX19_04942at 406.015 kb on - strand, within MPMX19_04942at 406.015 kb on - strand, within MPMX19_04942at 406.015 kb on - strand, within MPMX19_04942at 406.044 kb on + strand, within MPMX19_04942at 406.044 kb on + strand, within MPMX19_04942at 406.044 kb on + strand, within MPMX19_04942at 406.044 kb on + strand, within MPMX19_04942at 406.044 kb on + strand, within MPMX19_04942at 406.045 kb on - strand, within MPMX19_04942at 406.045 kb on - strand, within MPMX19_04942at 406.045 kb on - strand, within MPMX19_04942at 406.045 kb on - strand, within MPMX19_04942at 406.045 kb on - strand, within MPMX19_04942at 406.115 kb on + strand, within MPMX19_04942at 406.115 kb on + strand, within MPMX19_04942at 406.116 kb on - strand, within MPMX19_04942at 406.275 kb on - strand, within MPMX19_04942at 406.408 kb on + strandat 406.408 kb on + strandat 406.409 kb on - strandat 406.409 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; high oxygen
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404,148 + MPMX19_04940 0.55 -1.7
404,148 + MPMX19_04940 0.55 -0.6
404,149 - MPMX19_04940 0.55 -0.9
404,149 - MPMX19_04940 0.55 -0.2
404,149 - MPMX19_04940 0.55 +0.0
404,627 + MPMX19_04940 0.86 -0.6
404,628 - MPMX19_04940 0.86 -1.2
404,628 - MPMX19_04940 0.86 +0.0
404,629 + MPMX19_04940 0.86 +0.5
404,630 - MPMX19_04940 0.86 -0.9
404,630 - MPMX19_04940 0.86 -1.2
404,630 - MPMX19_04940 0.86 -0.1
404,630 - MPMX19_04940 0.86 -0.2
404,733 + +0.2
404,733 + -0.2
404,734 - -0.3
404,748 + -1.4
404,749 - +0.9
404,749 - -0.8
404,990 + MPMX19_04941 0.19 -0.6
404,990 + MPMX19_04941 0.19 +0.2
404,990 + MPMX19_04941 0.19 -1.6
404,990 + MPMX19_04941 0.19 -1.2
404,991 - MPMX19_04941 0.19 +0.5
404,991 - MPMX19_04941 0.19 -0.4
404,991 - MPMX19_04941 0.19 -0.7
405,035 + MPMX19_04941 0.24 +0.9
405,035 + MPMX19_04941 0.24 -0.2
405,036 - MPMX19_04941 0.24 -1.2
405,044 + MPMX19_04941 0.25 -1.2
405,045 - MPMX19_04941 0.25 -1.3
405,045 - MPMX19_04941 0.25 -2.1
405,045 - MPMX19_04941 0.25 +0.4
405,045 - MPMX19_04941 0.25 +1.1
405,045 - MPMX19_04941 0.25 -1.6
405,045 - MPMX19_04941 0.25 -2.0
405,086 + MPMX19_04941 0.31 +0.0
405,200 + MPMX19_04941 0.44 -0.2
405,200 + MPMX19_04941 0.44 -0.9
405,201 - MPMX19_04941 0.45 +0.5
405,213 - MPMX19_04941 0.46 -2.2
405,213 - MPMX19_04941 0.46 -0.7
405,275 + MPMX19_04941 0.54 -0.3
405,275 + MPMX19_04941 0.54 -1.3
405,275 + MPMX19_04941 0.54 -0.7
405,275 + MPMX19_04941 0.54 -1.7
405,276 - MPMX19_04941 0.54 -1.4
405,276 - MPMX19_04941 0.54 -1.3
405,276 - MPMX19_04941 0.54 -2.2
405,276 - MPMX19_04941 0.54 -1.2
405,276 - MPMX19_04941 0.54 +0.7
405,276 - MPMX19_04941 0.54 -1.0
405,276 - MPMX19_04941 0.54 +0.3
405,276 - MPMX19_04941 0.54 -2.0
405,276 - MPMX19_04941 0.54 -0.6
405,276 - MPMX19_04941 0.54 -0.3
405,276 - MPMX19_04941 0.54 -0.9
405,276 - MPMX19_04941 0.54 -0.6
405,276 - MPMX19_04941 0.54 -0.1
405,276 - MPMX19_04941 0.54 -0.8
405,276 - MPMX19_04941 0.54 -0.6
405,276 - MPMX19_04941 0.54 -0.4
405,276 - MPMX19_04941 0.54 -0.8
405,480 - MPMX19_04941 0.79 -1.4
405,536 + MPMX19_04941 0.86 -0.2
405,536 + MPMX19_04941 0.86 -0.3
405,536 + MPMX19_04941 0.86 -1.6
405,536 + MPMX19_04941 0.86 +0.1
405,537 - MPMX19_04941 0.86 -0.4
405,537 - MPMX19_04941 0.86 -2.1
405,537 - MPMX19_04941 0.86 -0.9
405,537 - MPMX19_04941 0.86 +0.8
405,653 + -0.9
405,653 + -1.1
405,653 + -1.9
405,654 - +0.5
405,654 - -1.0
405,833 + MPMX19_04942 0.12 -1.4
405,965 + MPMX19_04942 0.33 +1.3
405,965 + MPMX19_04942 0.33 +0.5
405,965 + MPMX19_04942 0.33 -1.9
405,965 + MPMX19_04942 0.33 -0.4
405,965 + MPMX19_04942 0.33 -0.6
405,965 + MPMX19_04942 0.33 +0.0
405,965 + MPMX19_04942 0.33 +0.0
405,965 + MPMX19_04942 0.33 -2.0
405,965 + MPMX19_04942 0.33 -1.4
405,965 + MPMX19_04942 0.33 -1.1
405,966 - MPMX19_04942 0.33 -1.3
405,966 - MPMX19_04942 0.33 -1.7
405,966 - MPMX19_04942 0.33 +0.0
405,966 - MPMX19_04942 0.33 +0.6
405,966 - MPMX19_04942 0.33 -1.2
405,966 - MPMX19_04942 0.33 -0.9
405,966 - MPMX19_04942 0.33 -1.5
405,966 - MPMX19_04942 0.33 +0.1
405,966 - MPMX19_04942 0.33 -0.3
405,972 + MPMX19_04942 0.34 -0.1
406,014 + MPMX19_04942 0.40 -1.7
406,014 + MPMX19_04942 0.40 -1.2
406,014 + MPMX19_04942 0.40 -0.4
406,015 - MPMX19_04942 0.40 -0.4
406,015 - MPMX19_04942 0.40 -1.1
406,015 - MPMX19_04942 0.40 +0.2
406,015 - MPMX19_04942 0.40 -1.1
406,044 + MPMX19_04942 0.45 -0.4
406,044 + MPMX19_04942 0.45 +0.0
406,044 + MPMX19_04942 0.45 +0.4
406,044 + MPMX19_04942 0.45 +0.4
406,044 + MPMX19_04942 0.45 -0.8
406,045 - MPMX19_04942 0.45 -1.7
406,045 - MPMX19_04942 0.45 -0.3
406,045 - MPMX19_04942 0.45 -0.8
406,045 - MPMX19_04942 0.45 +0.6
406,045 - MPMX19_04942 0.45 +0.0
406,115 + MPMX19_04942 0.56 -1.1
406,115 + MPMX19_04942 0.56 -0.2
406,116 - MPMX19_04942 0.56 -1.2
406,275 - MPMX19_04942 0.80 -0.6
406,408 + -0.2
406,408 + -0.5
406,409 - +0.2
406,409 - -2.0

Or see this region's nucleotide sequence