Experiment: NL-CCM; high oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04224 and MPMX19_04225 are separated by 210 nucleotides MPMX19_04225 and MPMX19_04226 are separated by 99 nucleotides MPMX19_04226 and MPMX19_04227 are separated by 21 nucleotides MPMX19_04227 and MPMX19_04228 are separated by 187 nucleotides
MPMX19_04224: MPMX19_04224 - hypothetical protein, at 567,055 to 569,667
_04224
MPMX19_04225: MPMX19_04225 - hypothetical protein, at 569,878 to 571,359
_04225
MPMX19_04226: MPMX19_04226 - hypothetical protein, at 571,459 to 571,797
_04226
MPMX19_04227: MPMX19_04227 - hypothetical protein, at 571,819 to 572,067
_04227
MPMX19_04228: MPMX19_04228 - hypothetical protein, at 572,255 to 573,847
_04228
Position (kb) 569
570
571
572 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 569.252 kb on + strand, within MPMX19_04224 at 569.273 kb on + strand, within MPMX19_04224 at 569.274 kb on - strand, within MPMX19_04224 at 569.274 kb on - strand, within MPMX19_04224 at 569.274 kb on - strand, within MPMX19_04224 at 569.274 kb on - strand, within MPMX19_04224 at 569.312 kb on + strand, within MPMX19_04224 at 569.312 kb on + strand, within MPMX19_04224 at 569.312 kb on + strand, within MPMX19_04224 at 569.312 kb on + strand, within MPMX19_04224 at 569.312 kb on + strand, within MPMX19_04224 at 569.312 kb on + strand, within MPMX19_04224 at 569.312 kb on + strand, within MPMX19_04224 at 569.313 kb on - strand, within MPMX19_04224 at 569.313 kb on - strand, within MPMX19_04224 at 569.313 kb on - strand, within MPMX19_04224 at 569.313 kb on - strand, within MPMX19_04224 at 569.313 kb on - strand, within MPMX19_04224 at 569.313 kb on - strand, within MPMX19_04224 at 569.313 kb on - strand, within MPMX19_04224 at 569.313 kb on - strand, within MPMX19_04224 at 569.313 kb on - strand, within MPMX19_04224 at 569.313 kb on - strand, within MPMX19_04224 at 569.313 kb on - strand, within MPMX19_04224 at 569.313 kb on - strand, within MPMX19_04224 at 569.313 kb on - strand, within MPMX19_04224 at 569.313 kb on - strand, within MPMX19_04224 at 569.561 kb on + strand at 569.561 kb on + strand at 569.562 kb on - strand at 569.562 kb on - strand at 569.712 kb on - strand at 569.715 kb on + strand at 569.715 kb on + strand at 569.715 kb on + strand at 569.715 kb on + strand at 569.715 kb on + strand at 569.715 kb on + strand at 569.715 kb on + strand at 569.716 kb on - strand at 569.716 kb on - strand at 569.716 kb on - strand at 569.716 kb on - strand at 569.716 kb on - strand at 569.716 kb on - strand at 569.716 kb on - strand at 569.767 kb on + strand at 569.768 kb on - strand at 569.814 kb on - strand at 569.828 kb on + strand at 569.828 kb on + strand at 569.828 kb on + strand at 569.829 kb on - strand at 569.880 kb on - strand at 569.993 kb on + strand at 569.994 kb on - strand at 569.994 kb on - strand at 570.237 kb on + strand, within MPMX19_04225 at 570.434 kb on + strand, within MPMX19_04225 at 570.434 kb on + strand, within MPMX19_04225 at 570.435 kb on - strand, within MPMX19_04225 at 570.435 kb on - strand, within MPMX19_04225 at 570.435 kb on - strand, within MPMX19_04225 at 570.435 kb on - strand, within MPMX19_04225 at 570.435 kb on - strand, within MPMX19_04225 at 570.435 kb on - strand, within MPMX19_04225 at 570.581 kb on + strand, within MPMX19_04225 at 570.581 kb on + strand, within MPMX19_04225 at 570.581 kb on + strand, within MPMX19_04225 at 570.582 kb on - strand, within MPMX19_04225 at 570.582 kb on - strand, within MPMX19_04225 at 570.582 kb on - strand, within MPMX19_04225 at 570.582 kb on - strand, within MPMX19_04225 at 570.582 kb on - strand, within MPMX19_04225 at 570.653 kb on + strand, within MPMX19_04225 at 570.653 kb on + strand, within MPMX19_04225 at 570.654 kb on - strand, within MPMX19_04225 at 571.353 kb on + strand at 571.354 kb on - strand at 571.354 kb on - strand at 571.354 kb on - strand at 571.354 kb on - strand at 571.359 kb on + strand at 571.359 kb on + strand at 571.359 kb on + strand at 571.359 kb on + strand at 571.360 kb on - strand at 571.360 kb on - strand at 571.371 kb on + strand at 571.371 kb on + strand at 571.371 kb on + strand at 571.371 kb on + strand at 571.371 kb on + strand at 571.371 kb on + strand at 571.371 kb on + strand at 571.371 kb on + strand at 571.371 kb on + strand at 571.372 kb on - strand at 571.372 kb on - strand at 571.372 kb on - strand at 571.372 kb on - strand at 571.372 kb on - strand at 571.372 kb on - strand at 571.372 kb on - strand at 571.372 kb on - strand at 571.702 kb on + strand, within MPMX19_04226 at 571.702 kb on + strand, within MPMX19_04226 at 571.702 kb on + strand, within MPMX19_04226 at 571.702 kb on + strand, within MPMX19_04226 at 571.702 kb on + strand, within MPMX19_04226 at 571.703 kb on - strand, within MPMX19_04226 at 571.703 kb on - strand, within MPMX19_04226 at 571.703 kb on - strand, within MPMX19_04226 at 571.703 kb on - strand, within MPMX19_04226 at 571.703 kb on - strand, within MPMX19_04226 at 571.703 kb on - strand, within MPMX19_04226 at 571.703 kb on - strand, within MPMX19_04226 at 571.703 kb on - strand, within MPMX19_04226 at 571.703 kb on - strand, within MPMX19_04226 at 571.703 kb on - strand, within MPMX19_04226 at 571.703 kb on - strand, within MPMX19_04226 at 571.703 kb on - strand, within MPMX19_04226 at 571.723 kb on + strand, within MPMX19_04226 at 571.723 kb on + strand, within MPMX19_04226 at 571.723 kb on + strand, within MPMX19_04226 at 572.256 kb on + strand at 572.256 kb on + strand at 572.256 kb on + strand at 572.256 kb on + strand at 572.256 kb on + strand at 572.257 kb on - strand at 572.257 kb on - strand at 572.257 kb on - strand at 572.257 kb on - strand at 572.257 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; high oxygen remove 569,252 + MPMX19_04224 0.84 +0.1 569,273 + MPMX19_04224 0.85 +0.5 569,274 - MPMX19_04224 0.85 +0.7 569,274 - MPMX19_04224 0.85 +0.5 569,274 - MPMX19_04224 0.85 +0.6 569,274 - MPMX19_04224 0.85 +0.1 569,312 + MPMX19_04224 0.86 +0.1 569,312 + MPMX19_04224 0.86 -0.2 569,312 + MPMX19_04224 0.86 -0.6 569,312 + MPMX19_04224 0.86 +0.2 569,312 + MPMX19_04224 0.86 +0.5 569,312 + MPMX19_04224 0.86 -0.1 569,312 + MPMX19_04224 0.86 -0.2 569,313 - MPMX19_04224 0.86 +1.3 569,313 - MPMX19_04224 0.86 +0.3 569,313 - MPMX19_04224 0.86 -0.1 569,313 - MPMX19_04224 0.86 +0.1 569,313 - MPMX19_04224 0.86 +0.8 569,313 - MPMX19_04224 0.86 +0.3 569,313 - MPMX19_04224 0.86 +0.6 569,313 - MPMX19_04224 0.86 +1.5 569,313 - MPMX19_04224 0.86 +1.4 569,313 - MPMX19_04224 0.86 -0.2 569,313 - MPMX19_04224 0.86 -1.0 569,313 - MPMX19_04224 0.86 +0.7 569,313 - MPMX19_04224 0.86 +0.9 569,313 - MPMX19_04224 0.86 +0.0 569,561 + -0.8 569,561 + +0.3 569,562 - -0.2 569,562 - -0.5 569,712 - +0.1 569,715 + +0.6 569,715 + -0.0 569,715 + -0.1 569,715 + +1.9 569,715 + +0.5 569,715 + +0.2 569,715 + +0.3 569,716 - +0.9 569,716 - +0.1 569,716 - -0.1 569,716 - +0.2 569,716 - +0.9 569,716 - -1.1 569,716 - -0.3 569,767 + -1.2 569,768 - +0.2 569,814 - +0.3 569,828 + -0.6 569,828 + +0.2 569,828 + -0.3 569,829 - -0.2 569,880 - -1.2 569,993 + -0.1 569,994 - +1.3 569,994 - +0.7 570,237 + MPMX19_04225 0.24 -0.9 570,434 + MPMX19_04225 0.38 +0.9 570,434 + MPMX19_04225 0.38 -0.1 570,435 - MPMX19_04225 0.38 -0.1 570,435 - MPMX19_04225 0.38 +1.2 570,435 - MPMX19_04225 0.38 -0.5 570,435 - MPMX19_04225 0.38 +0.4 570,435 - MPMX19_04225 0.38 -2.8 570,435 - MPMX19_04225 0.38 +0.6 570,581 + MPMX19_04225 0.47 +0.3 570,581 + MPMX19_04225 0.47 +0.7 570,581 + MPMX19_04225 0.47 +0.3 570,582 - MPMX19_04225 0.48 -0.6 570,582 - MPMX19_04225 0.48 +1.1 570,582 - MPMX19_04225 0.48 +0.4 570,582 - MPMX19_04225 0.48 +1.0 570,582 - MPMX19_04225 0.48 +0.7 570,653 + MPMX19_04225 0.52 +0.3 570,653 + MPMX19_04225 0.52 -0.2 570,654 - MPMX19_04225 0.52 -0.0 571,353 + +0.1 571,354 - -1.0 571,354 - +1.3 571,354 - +0.3 571,354 - -0.0 571,359 + -0.3 571,359 + -0.4 571,359 + -0.1 571,359 + +0.8 571,360 - -1.0 571,360 - -0.8 571,371 + +0.4 571,371 + -1.1 571,371 + -0.2 571,371 + -0.4 571,371 + +0.7 571,371 + +0.3 571,371 + -1.0 571,371 + +0.6 571,371 + -1.9 571,372 - +1.0 571,372 - -0.0 571,372 - -1.2 571,372 - +0.7 571,372 - -1.3 571,372 - -1.1 571,372 - -0.2 571,372 - -0.8 571,702 + MPMX19_04226 0.72 -1.4 571,702 + MPMX19_04226 0.72 -1.4 571,702 + MPMX19_04226 0.72 +2.2 571,702 + MPMX19_04226 0.72 -1.3 571,702 + MPMX19_04226 0.72 -1.3 571,703 - MPMX19_04226 0.72 -0.0 571,703 - MPMX19_04226 0.72 -0.6 571,703 - MPMX19_04226 0.72 -1.9 571,703 - MPMX19_04226 0.72 +0.2 571,703 - MPMX19_04226 0.72 +0.3 571,703 - MPMX19_04226 0.72 -0.1 571,703 - MPMX19_04226 0.72 -0.7 571,703 - MPMX19_04226 0.72 +0.4 571,703 - MPMX19_04226 0.72 -0.1 571,703 - MPMX19_04226 0.72 -1.6 571,703 - MPMX19_04226 0.72 -2.1 571,703 - MPMX19_04226 0.72 -0.9 571,723 + MPMX19_04226 0.78 -0.2 571,723 + MPMX19_04226 0.78 +1.1 571,723 + MPMX19_04226 0.78 -0.4 572,256 + -2.6 572,256 + -0.2 572,256 + +0.6 572,256 + +0.3 572,256 + -0.7 572,257 - +0.8 572,257 - -0.5 572,257 - +0.2 572,257 - -0.7 572,257 - -0.2
Or see this region's nucleotide sequence