Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04148

Experiment: NL-CCM; high oxygen

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_04146 and MPMX19_04147 are separated by 117 nucleotidesMPMX19_04147 and MPMX19_04148 are separated by 290 nucleotidesMPMX19_04148 and MPMX19_04149 are separated by 5 nucleotides MPMX19_04146: MPMX19_04146 - L-lactate dehydrogenase, at 457,402 to 458,616 _04146 MPMX19_04147: MPMX19_04147 - hypothetical protein, at 458,734 to 458,925 _04147 MPMX19_04148: MPMX19_04148 - Nitrate regulatory protein, at 459,216 to 460,577 _04148 MPMX19_04149: MPMX19_04149 - hypothetical protein, at 460,583 to 461,809 _04149 Position (kb) 459 460 461Strain fitness (log2 ratio) -2 -1 0 1 2 3at 458.450 kb on + strand, within MPMX19_04146at 458.451 kb on - strand, within MPMX19_04146at 458.451 kb on - strand, within MPMX19_04146at 458.451 kb on - strand, within MPMX19_04146at 458.465 kb on + strand, within MPMX19_04146at 458.465 kb on + strand, within MPMX19_04146at 458.465 kb on + strand, within MPMX19_04146at 458.465 kb on + strand, within MPMX19_04146at 458.465 kb on + strand, within MPMX19_04146at 458.466 kb on - strand, within MPMX19_04146at 458.466 kb on - strand, within MPMX19_04146at 458.466 kb on - strand, within MPMX19_04146at 458.466 kb on - strand, within MPMX19_04146at 458.466 kb on - strand, within MPMX19_04146at 458.466 kb on - strand, within MPMX19_04146at 458.483 kb on + strand, within MPMX19_04146at 458.489 kb on + strand, within MPMX19_04146at 458.489 kb on + strand, within MPMX19_04146at 458.489 kb on + strand, within MPMX19_04146at 458.489 kb on + strand, within MPMX19_04146at 458.489 kb on + strand, within MPMX19_04146at 458.489 kb on + strand, within MPMX19_04146at 458.489 kb on + strand, within MPMX19_04146at 458.490 kb on - strand, within MPMX19_04146at 458.490 kb on - strand, within MPMX19_04146at 458.490 kb on - strand, within MPMX19_04146at 458.490 kb on - strand, within MPMX19_04146at 458.490 kb on - strand, within MPMX19_04146at 458.490 kb on - strand, within MPMX19_04146at 459.093 kb on + strandat 459.129 kb on + strandat 459.129 kb on + strandat 459.129 kb on + strandat 459.129 kb on + strandat 459.129 kb on + strandat 459.130 kb on - strandat 459.130 kb on - strandat 459.130 kb on - strandat 459.130 kb on - strandat 459.130 kb on - strandat 459.130 kb on - strandat 459.130 kb on - strandat 459.130 kb on - strandat 459.140 kb on + strandat 459.140 kb on + strandat 459.140 kb on + strandat 459.140 kb on + strandat 459.140 kb on + strandat 459.141 kb on - strandat 459.141 kb on - strandat 459.141 kb on - strandat 459.141 kb on - strandat 459.141 kb on - strandat 459.141 kb on - strandat 459.141 kb on - strandat 459.141 kb on - strandat 459.141 kb on - strandat 459.153 kb on + strandat 459.153 kb on + strandat 459.153 kb on + strandat 459.153 kb on + strandat 459.153 kb on + strandat 459.154 kb on - strandat 459.154 kb on - strandat 459.201 kb on - strandat 459.201 kb on - strandat 459.375 kb on + strand, within MPMX19_04148at 459.375 kb on + strand, within MPMX19_04148at 459.375 kb on + strand, within MPMX19_04148at 459.375 kb on + strand, within MPMX19_04148at 459.375 kb on + strand, within MPMX19_04148at 459.375 kb on + strand, within MPMX19_04148at 459.375 kb on + strand, within MPMX19_04148at 459.376 kb on - strand, within MPMX19_04148at 459.376 kb on - strand, within MPMX19_04148at 459.376 kb on - strand, within MPMX19_04148at 459.376 kb on - strand, within MPMX19_04148at 459.376 kb on - strand, within MPMX19_04148at 459.376 kb on - strand, within MPMX19_04148at 459.376 kb on - strand, within MPMX19_04148at 459.376 kb on - strand, within MPMX19_04148at 459.376 kb on - strand, within MPMX19_04148at 459.376 kb on - strand, within MPMX19_04148at 459.376 kb on - strand, within MPMX19_04148at 459.516 kb on + strand, within MPMX19_04148at 459.516 kb on + strand, within MPMX19_04148at 459.516 kb on + strand, within MPMX19_04148at 459.516 kb on + strand, within MPMX19_04148at 459.516 kb on + strand, within MPMX19_04148at 459.516 kb on + strand, within MPMX19_04148at 459.517 kb on - strand, within MPMX19_04148at 459.517 kb on - strand, within MPMX19_04148at 459.517 kb on - strand, within MPMX19_04148at 459.517 kb on - strand, within MPMX19_04148at 459.540 kb on + strand, within MPMX19_04148at 459.540 kb on + strand, within MPMX19_04148at 459.540 kb on + strand, within MPMX19_04148at 459.540 kb on + strand, within MPMX19_04148at 459.540 kb on + strand, within MPMX19_04148at 459.540 kb on + strand, within MPMX19_04148at 459.541 kb on - strand, within MPMX19_04148at 459.541 kb on - strand, within MPMX19_04148at 459.541 kb on - strand, within MPMX19_04148at 459.541 kb on - strand, within MPMX19_04148at 459.541 kb on - strand, within MPMX19_04148at 460.257 kb on + strand, within MPMX19_04148at 460.257 kb on + strand, within MPMX19_04148at 460.257 kb on + strand, within MPMX19_04148at 460.257 kb on + strand, within MPMX19_04148at 460.257 kb on + strand, within MPMX19_04148at 460.257 kb on + strand, within MPMX19_04148at 460.257 kb on + strand, within MPMX19_04148at 460.257 kb on + strand, within MPMX19_04148at 460.257 kb on + strand, within MPMX19_04148at 460.257 kb on + strand, within MPMX19_04148at 460.257 kb on + strand, within MPMX19_04148at 460.258 kb on - strand, within MPMX19_04148at 460.258 kb on - strand, within MPMX19_04148at 460.258 kb on - strand, within MPMX19_04148at 460.258 kb on - strand, within MPMX19_04148at 460.258 kb on - strand, within MPMX19_04148at 460.258 kb on - strand, within MPMX19_04148at 460.446 kb on + strandat 460.446 kb on + strandat 460.446 kb on + strandat 460.446 kb on + strandat 460.446 kb on + strandat 460.446 kb on + strandat 460.446 kb on + strandat 460.446 kb on + strandat 460.446 kb on + strandat 460.446 kb on + strandat 460.446 kb on + strandat 460.446 kb on + strandat 460.446 kb on + strandat 460.447 kb on - strandat 460.447 kb on - strandat 460.447 kb on - strandat 460.447 kb on - strandat 460.447 kb on - strandat 460.447 kb on - strandat 460.447 kb on - strandat 460.447 kb on - strandat 460.447 kb on - strandat 460.447 kb on - strandat 460.447 kb on - strandat 460.447 kb on - strandat 460.575 kb on + strandat 460.575 kb on + strandat 460.576 kb on - strandat 460.584 kb on + strandat 460.585 kb on - strandat 460.779 kb on + strand, within MPMX19_04149at 460.779 kb on + strand, within MPMX19_04149at 460.779 kb on + strand, within MPMX19_04149at 460.779 kb on + strand, within MPMX19_04149at 460.779 kb on + strand, within MPMX19_04149at 460.780 kb on - strand, within MPMX19_04149at 460.780 kb on - strand, within MPMX19_04149at 460.780 kb on - strand, within MPMX19_04149at 460.780 kb on - strand, within MPMX19_04149at 460.853 kb on + strand, within MPMX19_04149at 460.853 kb on + strand, within MPMX19_04149

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; high oxygen
remove
458,450 + MPMX19_04146 0.86 -1.9
458,451 - MPMX19_04146 0.86 -1.7
458,451 - MPMX19_04146 0.86 -2.6
458,451 - MPMX19_04146 0.86 +0.6
458,465 + MPMX19_04146 0.87 -1.3
458,465 + MPMX19_04146 0.87 -0.6
458,465 + MPMX19_04146 0.87 -0.7
458,465 + MPMX19_04146 0.87 -1.1
458,465 + MPMX19_04146 0.87 -0.3
458,466 - MPMX19_04146 0.88 +0.2
458,466 - MPMX19_04146 0.88 -1.4
458,466 - MPMX19_04146 0.88 +0.2
458,466 - MPMX19_04146 0.88 -1.8
458,466 - MPMX19_04146 0.88 +0.7
458,466 - MPMX19_04146 0.88 -0.3
458,483 + MPMX19_04146 0.89 +0.6
458,489 + MPMX19_04146 0.89 -0.3
458,489 + MPMX19_04146 0.89 +0.4
458,489 + MPMX19_04146 0.89 -1.9
458,489 + MPMX19_04146 0.89 -0.1
458,489 + MPMX19_04146 0.89 -0.4
458,489 + MPMX19_04146 0.89 +0.4
458,489 + MPMX19_04146 0.89 +0.3
458,490 - MPMX19_04146 0.90 +0.2
458,490 - MPMX19_04146 0.90 -0.3
458,490 - MPMX19_04146 0.90 +0.2
458,490 - MPMX19_04146 0.90 +1.6
458,490 - MPMX19_04146 0.90 -0.8
458,490 - MPMX19_04146 0.90 -0.0
459,093 + +0.5
459,129 + -1.4
459,129 + -0.9
459,129 + -1.0
459,129 + -2.3
459,129 + -1.4
459,130 - +1.1
459,130 - -0.4
459,130 - -0.4
459,130 - -2.0
459,130 - -0.9
459,130 - -1.4
459,130 - -0.9
459,130 - +0.8
459,140 + -0.6
459,140 + -0.4
459,140 + -0.9
459,140 + -0.8
459,140 + +0.2
459,141 - -1.0
459,141 - -0.8
459,141 - -1.0
459,141 - +0.3
459,141 - -0.2
459,141 - -0.0
459,141 - +0.1
459,141 - +1.8
459,141 - -0.2
459,153 + -1.4
459,153 + -0.0
459,153 + -0.4
459,153 + +0.3
459,153 + +1.8
459,154 - -0.9
459,154 - -1.4
459,201 - -1.4
459,201 - -0.9
459,375 + MPMX19_04148 0.12 +0.9
459,375 + MPMX19_04148 0.12 -0.2
459,375 + MPMX19_04148 0.12 -0.0
459,375 + MPMX19_04148 0.12 -0.0
459,375 + MPMX19_04148 0.12 -0.2
459,375 + MPMX19_04148 0.12 +0.3
459,375 + MPMX19_04148 0.12 +1.0
459,376 - MPMX19_04148 0.12 -0.7
459,376 - MPMX19_04148 0.12 -0.9
459,376 - MPMX19_04148 0.12 +0.1
459,376 - MPMX19_04148 0.12 -0.8
459,376 - MPMX19_04148 0.12 -0.6
459,376 - MPMX19_04148 0.12 +2.9
459,376 - MPMX19_04148 0.12 -1.0
459,376 - MPMX19_04148 0.12 -0.1
459,376 - MPMX19_04148 0.12 -0.4
459,376 - MPMX19_04148 0.12 -0.0
459,376 - MPMX19_04148 0.12 -0.0
459,516 + MPMX19_04148 0.22 +1.2
459,516 + MPMX19_04148 0.22 -0.0
459,516 + MPMX19_04148 0.22 -1.9
459,516 + MPMX19_04148 0.22 -1.1
459,516 + MPMX19_04148 0.22 +0.3
459,516 + MPMX19_04148 0.22 +1.0
459,517 - MPMX19_04148 0.22 +1.0
459,517 - MPMX19_04148 0.22 -0.4
459,517 - MPMX19_04148 0.22 -0.3
459,517 - MPMX19_04148 0.22 -1.1
459,540 + MPMX19_04148 0.24 -1.0
459,540 + MPMX19_04148 0.24 -1.6
459,540 + MPMX19_04148 0.24 -0.5
459,540 + MPMX19_04148 0.24 +0.4
459,540 + MPMX19_04148 0.24 -0.3
459,540 + MPMX19_04148 0.24 -0.6
459,541 - MPMX19_04148 0.24 -0.4
459,541 - MPMX19_04148 0.24 +0.9
459,541 - MPMX19_04148 0.24 -0.8
459,541 - MPMX19_04148 0.24 -0.5
459,541 - MPMX19_04148 0.24 -0.0
460,257 + MPMX19_04148 0.76 +0.8
460,257 + MPMX19_04148 0.76 +0.6
460,257 + MPMX19_04148 0.76 +0.3
460,257 + MPMX19_04148 0.76 +1.0
460,257 + MPMX19_04148 0.76 -1.2
460,257 + MPMX19_04148 0.76 -0.3
460,257 + MPMX19_04148 0.76 +1.0
460,257 + MPMX19_04148 0.76 +0.6
460,257 + MPMX19_04148 0.76 +0.1
460,257 + MPMX19_04148 0.76 -0.4
460,257 + MPMX19_04148 0.76 +0.2
460,258 - MPMX19_04148 0.77 -0.3
460,258 - MPMX19_04148 0.77 -1.6
460,258 - MPMX19_04148 0.77 -1.3
460,258 - MPMX19_04148 0.77 +0.2
460,258 - MPMX19_04148 0.77 +0.3
460,258 - MPMX19_04148 0.77 -0.2
460,446 + -1.3
460,446 + -1.9
460,446 + -0.6
460,446 + -0.9
460,446 + +0.1
460,446 + +0.4
460,446 + -2.2
460,446 + +0.1
460,446 + -0.6
460,446 + +0.1
460,446 + +1.2
460,446 + +0.2
460,446 + -1.2
460,447 - -0.4
460,447 - +0.0
460,447 - -0.0
460,447 - +0.3
460,447 - -1.4
460,447 - -1.8
460,447 - -1.1
460,447 - +0.1
460,447 - -1.1
460,447 - -0.0
460,447 - +0.8
460,447 - -0.9
460,575 + -0.0
460,575 + -0.1
460,576 - +2.0
460,584 + -1.6
460,585 - +0.3
460,779 + MPMX19_04149 0.16 -0.0
460,779 + MPMX19_04149 0.16 -1.4
460,779 + MPMX19_04149 0.16 +0.6
460,779 + MPMX19_04149 0.16 +1.1
460,779 + MPMX19_04149 0.16 -0.0
460,780 - MPMX19_04149 0.16 -0.4
460,780 - MPMX19_04149 0.16 -0.6
460,780 - MPMX19_04149 0.16 -0.6
460,780 - MPMX19_04149 0.16 -0.0
460,853 + MPMX19_04149 0.22 -1.6
460,853 + MPMX19_04149 0.22 +0.8

Or see this region's nucleotide sequence