Experiment: NL-CCM; high oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03445 and MPMX19_03446 are separated by 1 nucleotides MPMX19_03446 and MPMX19_03447 overlap by 4 nucleotides MPMX19_03447 and MPMX19_03448 are separated by 26 nucleotides
MPMX19_03445: MPMX19_03445 - hypothetical protein, at 841,471 to 842,538
_03445
MPMX19_03446: MPMX19_03446 - hypothetical protein, at 842,540 to 843,352
_03446
MPMX19_03447: MPMX19_03447 - hypothetical protein, at 843,349 to 844,590
_03447
MPMX19_03448: MPMX19_03448 - hypothetical protein, at 844,617 to 845,423
_03448
Position (kb) 843
844
845 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 842.375 kb on + strand, within MPMX19_03445 at 842.375 kb on + strand, within MPMX19_03445 at 842.376 kb on - strand, within MPMX19_03445 at 842.383 kb on + strand, within MPMX19_03445 at 842.384 kb on - strand, within MPMX19_03445 at 842.384 kb on - strand, within MPMX19_03445 at 842.711 kb on + strand, within MPMX19_03446 at 842.711 kb on + strand, within MPMX19_03446 at 842.711 kb on + strand, within MPMX19_03446 at 842.711 kb on + strand, within MPMX19_03446 at 842.711 kb on + strand, within MPMX19_03446 at 842.711 kb on + strand, within MPMX19_03446 at 842.712 kb on - strand, within MPMX19_03446 at 842.712 kb on - strand, within MPMX19_03446 at 842.712 kb on - strand, within MPMX19_03446 at 842.712 kb on - strand, within MPMX19_03446 at 842.712 kb on - strand, within MPMX19_03446 at 842.712 kb on - strand, within MPMX19_03446 at 842.712 kb on - strand, within MPMX19_03446 at 842.746 kb on + strand, within MPMX19_03446 at 842.747 kb on - strand, within MPMX19_03446 at 842.747 kb on - strand, within MPMX19_03446 at 842.981 kb on + strand, within MPMX19_03446 at 842.981 kb on + strand, within MPMX19_03446 at 842.982 kb on - strand, within MPMX19_03446 at 842.982 kb on - strand, within MPMX19_03446 at 842.982 kb on - strand, within MPMX19_03446 at 842.982 kb on - strand, within MPMX19_03446 at 843.114 kb on - strand, within MPMX19_03446 at 843.114 kb on - strand, within MPMX19_03446 at 843.114 kb on - strand, within MPMX19_03446 at 843.272 kb on + strand at 843.272 kb on + strand at 843.272 kb on + strand at 843.272 kb on + strand at 843.272 kb on + strand at 843.273 kb on - strand at 843.273 kb on - strand at 843.273 kb on - strand at 843.273 kb on - strand at 843.376 kb on + strand at 843.478 kb on + strand, within MPMX19_03447 at 843.478 kb on + strand, within MPMX19_03447 at 843.478 kb on + strand, within MPMX19_03447 at 843.478 kb on + strand, within MPMX19_03447 at 843.478 kb on + strand, within MPMX19_03447 at 843.478 kb on + strand, within MPMX19_03447 at 843.479 kb on - strand, within MPMX19_03447 at 843.479 kb on - strand, within MPMX19_03447 at 843.479 kb on - strand, within MPMX19_03447 at 843.479 kb on - strand, within MPMX19_03447 at 843.479 kb on - strand, within MPMX19_03447 at 843.673 kb on + strand, within MPMX19_03447 at 843.673 kb on + strand, within MPMX19_03447 at 843.673 kb on + strand, within MPMX19_03447 at 843.673 kb on + strand, within MPMX19_03447 at 843.673 kb on + strand, within MPMX19_03447 at 843.673 kb on + strand, within MPMX19_03447 at 843.673 kb on + strand, within MPMX19_03447 at 843.673 kb on + strand, within MPMX19_03447 at 843.673 kb on + strand, within MPMX19_03447 at 843.673 kb on + strand, within MPMX19_03447 at 843.674 kb on - strand, within MPMX19_03447 at 843.674 kb on - strand, within MPMX19_03447 at 843.674 kb on - strand, within MPMX19_03447 at 843.674 kb on - strand, within MPMX19_03447 at 843.674 kb on - strand, within MPMX19_03447 at 843.674 kb on - strand, within MPMX19_03447 at 843.674 kb on - strand, within MPMX19_03447 at 843.674 kb on - strand, within MPMX19_03447 at 843.674 kb on - strand, within MPMX19_03447 at 843.674 kb on - strand, within MPMX19_03447 at 843.674 kb on - strand, within MPMX19_03447 at 843.823 kb on + strand, within MPMX19_03447 at 843.823 kb on + strand, within MPMX19_03447 at 843.823 kb on + strand, within MPMX19_03447 at 843.823 kb on + strand, within MPMX19_03447 at 843.823 kb on + strand, within MPMX19_03447 at 843.823 kb on + strand, within MPMX19_03447 at 843.824 kb on - strand, within MPMX19_03447 at 843.824 kb on - strand, within MPMX19_03447 at 843.824 kb on - strand, within MPMX19_03447 at 843.824 kb on - strand, within MPMX19_03447 at 843.824 kb on - strand, within MPMX19_03447 at 843.925 kb on + strand, within MPMX19_03447 at 843.943 kb on + strand, within MPMX19_03447 at 843.943 kb on + strand, within MPMX19_03447 at 843.943 kb on + strand, within MPMX19_03447 at 843.943 kb on + strand, within MPMX19_03447 at 843.943 kb on + strand, within MPMX19_03447 at 843.943 kb on + strand, within MPMX19_03447 at 843.943 kb on + strand, within MPMX19_03447 at 843.943 kb on + strand, within MPMX19_03447 at 843.943 kb on + strand, within MPMX19_03447 at 843.943 kb on + strand, within MPMX19_03447 at 843.943 kb on + strand, within MPMX19_03447 at 843.944 kb on - strand, within MPMX19_03447 at 843.944 kb on - strand, within MPMX19_03447 at 843.944 kb on - strand, within MPMX19_03447 at 843.944 kb on - strand, within MPMX19_03447 at 843.944 kb on - strand, within MPMX19_03447 at 843.944 kb on - strand, within MPMX19_03447 at 843.944 kb on - strand, within MPMX19_03447 at 843.944 kb on - strand, within MPMX19_03447 at 843.944 kb on - strand, within MPMX19_03447 at 843.944 kb on - strand, within MPMX19_03447 at 843.944 kb on - strand, within MPMX19_03447 at 843.979 kb on + strand, within MPMX19_03447 at 843.979 kb on + strand, within MPMX19_03447 at 843.979 kb on + strand, within MPMX19_03447 at 843.979 kb on + strand, within MPMX19_03447 at 843.979 kb on + strand, within MPMX19_03447 at 843.980 kb on - strand, within MPMX19_03447 at 843.980 kb on - strand, within MPMX19_03447 at 844.037 kb on - strand, within MPMX19_03447 at 844.037 kb on - strand, within MPMX19_03447 at 844.037 kb on - strand, within MPMX19_03447 at 844.042 kb on + strand, within MPMX19_03447 at 844.042 kb on + strand, within MPMX19_03447 at 844.042 kb on + strand, within MPMX19_03447 at 844.043 kb on - strand, within MPMX19_03447 at 844.043 kb on - strand, within MPMX19_03447 at 844.043 kb on - strand, within MPMX19_03447 at 844.043 kb on - strand, within MPMX19_03447 at 844.043 kb on - strand, within MPMX19_03447 at 844.043 kb on - strand, within MPMX19_03447 at 844.043 kb on - strand, within MPMX19_03447 at 844.043 kb on - strand, within MPMX19_03447 at 844.043 kb on - strand, within MPMX19_03447 at 844.043 kb on - strand, within MPMX19_03447 at 844.045 kb on + strand, within MPMX19_03447 at 844.045 kb on + strand, within MPMX19_03447 at 844.045 kb on + strand, within MPMX19_03447 at 844.046 kb on - strand, within MPMX19_03447 at 844.046 kb on - strand, within MPMX19_03447 at 844.093 kb on + strand, within MPMX19_03447 at 844.093 kb on + strand, within MPMX19_03447 at 844.093 kb on + strand, within MPMX19_03447 at 844.093 kb on + strand, within MPMX19_03447 at 844.093 kb on + strand, within MPMX19_03447 at 844.093 kb on + strand, within MPMX19_03447 at 844.094 kb on - strand, within MPMX19_03447 at 844.094 kb on - strand, within MPMX19_03447 at 844.094 kb on - strand, within MPMX19_03447 at 844.229 kb on + strand, within MPMX19_03447 at 844.229 kb on + strand, within MPMX19_03447 at 844.229 kb on + strand, within MPMX19_03447 at 844.230 kb on - strand, within MPMX19_03447 at 844.230 kb on - strand, within MPMX19_03447 at 844.230 kb on - strand, within MPMX19_03447 at 844.230 kb on - strand, within MPMX19_03447 at 844.230 kb on - strand, within MPMX19_03447 at 844.316 kb on - strand, within MPMX19_03447 at 844.316 kb on - strand, within MPMX19_03447 at 844.345 kb on + strand, within MPMX19_03447 at 844.345 kb on + strand, within MPMX19_03447 at 844.345 kb on + strand, within MPMX19_03447 at 844.345 kb on + strand, within MPMX19_03447 at 844.345 kb on + strand, within MPMX19_03447 at 844.345 kb on + strand, within MPMX19_03447 at 844.345 kb on + strand, within MPMX19_03447 at 844.345 kb on + strand, within MPMX19_03447 at 844.346 kb on - strand, within MPMX19_03447 at 844.346 kb on - strand, within MPMX19_03447 at 844.346 kb on - strand, within MPMX19_03447 at 844.346 kb on - strand, within MPMX19_03447 at 844.346 kb on - strand, within MPMX19_03447 at 844.346 kb on - strand, within MPMX19_03447 at 844.346 kb on - strand, within MPMX19_03447 at 844.346 kb on - strand, within MPMX19_03447 at 844.499 kb on - strand at 844.614 kb on + strand at 844.614 kb on + strand at 844.614 kb on + strand at 844.614 kb on + strand at 844.614 kb on + strand at 844.615 kb on - strand at 844.615 kb on - strand at 844.615 kb on - strand at 844.615 kb on - strand at 844.615 kb on - strand at 844.615 kb on - strand at 844.615 kb on - strand at 844.633 kb on - strand at 844.633 kb on - strand at 844.688 kb on + strand at 844.688 kb on + strand at 844.688 kb on + strand at 844.688 kb on + strand at 844.688 kb on + strand at 844.689 kb on - strand at 844.689 kb on - strand at 844.878 kb on + strand, within MPMX19_03448 at 844.878 kb on + strand, within MPMX19_03448 at 844.878 kb on + strand, within MPMX19_03448 at 844.905 kb on + strand, within MPMX19_03448 at 844.950 kb on + strand, within MPMX19_03448 at 844.951 kb on - strand, within MPMX19_03448 at 844.951 kb on - strand, within MPMX19_03448 at 845.025 kb on + strand, within MPMX19_03448 at 845.025 kb on + strand, within MPMX19_03448 at 845.026 kb on - strand, within MPMX19_03448 at 845.026 kb on - strand, within MPMX19_03448 at 845.026 kb on - strand, within MPMX19_03448 at 845.026 kb on - strand, within MPMX19_03448 at 845.026 kb on - strand, within MPMX19_03448 at 845.169 kb on + strand, within MPMX19_03448 at 845.169 kb on + strand, within MPMX19_03448 at 845.169 kb on + strand, within MPMX19_03448 at 845.170 kb on - strand, within MPMX19_03448 at 845.357 kb on + strand at 845.357 kb on + strand at 845.357 kb on + strand at 845.357 kb on + strand at 845.357 kb on + strand at 845.357 kb on + strand at 845.357 kb on + strand at 845.357 kb on + strand at 845.358 kb on - strand at 845.358 kb on - strand at 845.358 kb on - strand at 845.358 kb on - strand at 845.358 kb on - strand at 845.534 kb on + strand at 845.534 kb on + strand at 845.534 kb on + strand at 845.535 kb on - strand at 845.535 kb on - strand at 845.584 kb on + strand at 845.584 kb on + strand at 845.584 kb on + strand at 845.584 kb on + strand at 845.585 kb on - strand at 845.585 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; high oxygen remove 842,375 + MPMX19_03445 0.85 -0.7 842,375 + MPMX19_03445 0.85 +0.9 842,376 - MPMX19_03445 0.85 -1.0 842,383 + MPMX19_03445 0.85 -1.1 842,384 - MPMX19_03445 0.85 -0.7 842,384 - MPMX19_03445 0.85 -0.2 842,711 + MPMX19_03446 0.21 +2.1 842,711 + MPMX19_03446 0.21 -1.1 842,711 + MPMX19_03446 0.21 -1.8 842,711 + MPMX19_03446 0.21 -0.9 842,711 + MPMX19_03446 0.21 -0.1 842,711 + MPMX19_03446 0.21 +0.5 842,712 - MPMX19_03446 0.21 +1.0 842,712 - MPMX19_03446 0.21 -1.2 842,712 - MPMX19_03446 0.21 -1.4 842,712 - MPMX19_03446 0.21 -0.2 842,712 - MPMX19_03446 0.21 +0.4 842,712 - MPMX19_03446 0.21 -0.5 842,712 - MPMX19_03446 0.21 -0.2 842,746 + MPMX19_03446 0.25 +0.6 842,747 - MPMX19_03446 0.25 -0.7 842,747 - MPMX19_03446 0.25 +0.2 842,981 + MPMX19_03446 0.54 -1.7 842,981 + MPMX19_03446 0.54 -0.2 842,982 - MPMX19_03446 0.54 -1.6 842,982 - MPMX19_03446 0.54 +0.2 842,982 - MPMX19_03446 0.54 -2.1 842,982 - MPMX19_03446 0.54 -0.8 843,114 - MPMX19_03446 0.71 +0.5 843,114 - MPMX19_03446 0.71 -0.1 843,114 - MPMX19_03446 0.71 -1.7 843,272 + +0.5 843,272 + -1.7 843,272 + -0.4 843,272 + +0.2 843,272 + -0.8 843,273 - -1.0 843,273 - +0.3 843,273 - -0.3 843,273 - -2.1 843,376 + +0.5 843,478 + MPMX19_03447 0.10 -0.3 843,478 + MPMX19_03447 0.10 -0.3 843,478 + MPMX19_03447 0.10 -0.3 843,478 + MPMX19_03447 0.10 +0.9 843,478 + MPMX19_03447 0.10 -0.4 843,478 + MPMX19_03447 0.10 +0.4 843,479 - MPMX19_03447 0.10 -0.9 843,479 - MPMX19_03447 0.10 -1.1 843,479 - MPMX19_03447 0.10 -0.2 843,479 - MPMX19_03447 0.10 +0.1 843,479 - MPMX19_03447 0.10 +0.3 843,673 + MPMX19_03447 0.26 +0.5 843,673 + MPMX19_03447 0.26 +0.2 843,673 + MPMX19_03447 0.26 +0.7 843,673 + MPMX19_03447 0.26 +0.1 843,673 + MPMX19_03447 0.26 -0.9 843,673 + MPMX19_03447 0.26 -0.7 843,673 + MPMX19_03447 0.26 -0.9 843,673 + MPMX19_03447 0.26 +0.8 843,673 + MPMX19_03447 0.26 +0.1 843,673 + MPMX19_03447 0.26 -1.2 843,674 - MPMX19_03447 0.26 -0.1 843,674 - MPMX19_03447 0.26 -0.4 843,674 - MPMX19_03447 0.26 -0.1 843,674 - MPMX19_03447 0.26 +0.8 843,674 - MPMX19_03447 0.26 -0.1 843,674 - MPMX19_03447 0.26 -0.3 843,674 - MPMX19_03447 0.26 -1.3 843,674 - MPMX19_03447 0.26 -0.7 843,674 - MPMX19_03447 0.26 -0.0 843,674 - MPMX19_03447 0.26 -0.4 843,674 - MPMX19_03447 0.26 -0.1 843,823 + MPMX19_03447 0.38 +0.7 843,823 + MPMX19_03447 0.38 -0.1 843,823 + MPMX19_03447 0.38 -0.6 843,823 + MPMX19_03447 0.38 -0.7 843,823 + MPMX19_03447 0.38 -0.6 843,823 + MPMX19_03447 0.38 +0.4 843,824 - MPMX19_03447 0.38 -0.6 843,824 - MPMX19_03447 0.38 +0.5 843,824 - MPMX19_03447 0.38 +0.3 843,824 - MPMX19_03447 0.38 -1.5 843,824 - MPMX19_03447 0.38 -0.1 843,925 + MPMX19_03447 0.46 -1.7 843,943 + MPMX19_03447 0.48 +0.1 843,943 + MPMX19_03447 0.48 -0.7 843,943 + MPMX19_03447 0.48 -1.1 843,943 + MPMX19_03447 0.48 -0.8 843,943 + MPMX19_03447 0.48 +0.8 843,943 + MPMX19_03447 0.48 +1.2 843,943 + MPMX19_03447 0.48 -0.4 843,943 + MPMX19_03447 0.48 +0.4 843,943 + MPMX19_03447 0.48 -0.8 843,943 + MPMX19_03447 0.48 -0.7 843,943 + MPMX19_03447 0.48 -1.7 843,944 - MPMX19_03447 0.48 +1.0 843,944 - MPMX19_03447 0.48 +0.2 843,944 - MPMX19_03447 0.48 +0.1 843,944 - MPMX19_03447 0.48 +0.2 843,944 - MPMX19_03447 0.48 +0.4 843,944 - MPMX19_03447 0.48 -0.3 843,944 - MPMX19_03447 0.48 +0.0 843,944 - MPMX19_03447 0.48 +0.1 843,944 - MPMX19_03447 0.48 -2.3 843,944 - MPMX19_03447 0.48 -0.2 843,944 - MPMX19_03447 0.48 +0.6 843,979 + MPMX19_03447 0.51 -2.8 843,979 + MPMX19_03447 0.51 -0.1 843,979 + MPMX19_03447 0.51 -0.2 843,979 + MPMX19_03447 0.51 +0.8 843,979 + MPMX19_03447 0.51 +0.6 843,980 - MPMX19_03447 0.51 +0.1 843,980 - MPMX19_03447 0.51 +0.5 844,037 - MPMX19_03447 0.55 -0.0 844,037 - MPMX19_03447 0.55 -0.6 844,037 - MPMX19_03447 0.55 -0.1 844,042 + MPMX19_03447 0.56 +0.0 844,042 + MPMX19_03447 0.56 +0.7 844,042 + MPMX19_03447 0.56 -0.4 844,043 - MPMX19_03447 0.56 -1.7 844,043 - MPMX19_03447 0.56 +1.5 844,043 - MPMX19_03447 0.56 -0.5 844,043 - MPMX19_03447 0.56 -0.5 844,043 - MPMX19_03447 0.56 -0.2 844,043 - MPMX19_03447 0.56 -1.0 844,043 - MPMX19_03447 0.56 -1.5 844,043 - MPMX19_03447 0.56 -0.4 844,043 - MPMX19_03447 0.56 +0.5 844,043 - MPMX19_03447 0.56 +1.1 844,045 + MPMX19_03447 0.56 +0.0 844,045 + MPMX19_03447 0.56 -0.7 844,045 + MPMX19_03447 0.56 -1.5 844,046 - MPMX19_03447 0.56 +0.2 844,046 - MPMX19_03447 0.56 -0.2 844,093 + MPMX19_03447 0.60 -2.1 844,093 + MPMX19_03447 0.60 -1.1 844,093 + MPMX19_03447 0.60 -0.7 844,093 + MPMX19_03447 0.60 +0.4 844,093 + MPMX19_03447 0.60 -0.8 844,093 + MPMX19_03447 0.60 +0.8 844,094 - MPMX19_03447 0.60 +1.0 844,094 - MPMX19_03447 0.60 -1.7 844,094 - MPMX19_03447 0.60 -0.5 844,229 + MPMX19_03447 0.71 -1.0 844,229 + MPMX19_03447 0.71 -0.1 844,229 + MPMX19_03447 0.71 +0.3 844,230 - MPMX19_03447 0.71 -0.1 844,230 - MPMX19_03447 0.71 +1.8 844,230 - MPMX19_03447 0.71 -0.2 844,230 - MPMX19_03447 0.71 +1.7 844,230 - MPMX19_03447 0.71 +0.7 844,316 - MPMX19_03447 0.78 +0.5 844,316 - MPMX19_03447 0.78 -0.2 844,345 + MPMX19_03447 0.80 -1.1 844,345 + MPMX19_03447 0.80 +0.3 844,345 + MPMX19_03447 0.80 +0.3 844,345 + MPMX19_03447 0.80 -0.3 844,345 + MPMX19_03447 0.80 -1.4 844,345 + MPMX19_03447 0.80 -1.1 844,345 + MPMX19_03447 0.80 -1.0 844,345 + MPMX19_03447 0.80 +0.1 844,346 - MPMX19_03447 0.80 +0.1 844,346 - MPMX19_03447 0.80 -1.7 844,346 - MPMX19_03447 0.80 -0.0 844,346 - MPMX19_03447 0.80 -0.5 844,346 - MPMX19_03447 0.80 +0.9 844,346 - MPMX19_03447 0.80 +0.5 844,346 - MPMX19_03447 0.80 -0.6 844,346 - MPMX19_03447 0.80 +0.4 844,499 - -0.5 844,614 + -0.1 844,614 + -0.7 844,614 + +0.5 844,614 + -0.1 844,614 + -1.3 844,615 - -0.7 844,615 - +0.5 844,615 - -0.3 844,615 - -0.1 844,615 - -1.1 844,615 - -0.4 844,615 - +0.5 844,633 - -1.0 844,633 - +0.5 844,688 + +0.2 844,688 + -0.5 844,688 + -0.7 844,688 + -2.2 844,688 + -0.1 844,689 - -1.4 844,689 - +0.2 844,878 + MPMX19_03448 0.32 +1.5 844,878 + MPMX19_03448 0.32 -1.1 844,878 + MPMX19_03448 0.32 -0.5 844,905 + MPMX19_03448 0.36 -0.2 844,950 + MPMX19_03448 0.41 -0.1 844,951 - MPMX19_03448 0.41 -1.6 844,951 - MPMX19_03448 0.41 +0.5 845,025 + MPMX19_03448 0.51 -0.5 845,025 + MPMX19_03448 0.51 -2.2 845,026 - MPMX19_03448 0.51 +1.5 845,026 - MPMX19_03448 0.51 +0.3 845,026 - MPMX19_03448 0.51 -0.5 845,026 - MPMX19_03448 0.51 -1.5 845,026 - MPMX19_03448 0.51 -1.7 845,169 + MPMX19_03448 0.68 -0.7 845,169 + MPMX19_03448 0.68 -2.3 845,169 + MPMX19_03448 0.68 +0.3 845,170 - MPMX19_03448 0.69 -1.9 845,357 + -0.2 845,357 + -0.9 845,357 + -1.2 845,357 + -1.2 845,357 + -0.2 845,357 + -0.6 845,357 + -1.5 845,357 + -0.5 845,358 - -0.5 845,358 - -0.3 845,358 - -1.1 845,358 - -2.1 845,358 - +1.2 845,534 + -0.7 845,534 + +0.2 845,534 + -1.3 845,535 - +0.3 845,535 - +0.9 845,584 + -0.8 845,584 + +0.2 845,584 + -1.2 845,584 + -1.3 845,585 - -0.6 845,585 - +0.3
Or see this region's nucleotide sequence