Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03117

Experiment: NL-CCM; high oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03116 and MPMX19_03117 are separated by 141 nucleotidesMPMX19_03117 and MPMX19_03118 are separated by 206 nucleotidesMPMX19_03118 and MPMX19_03119 are separated by 103 nucleotides MPMX19_03116: MPMX19_03116 - Vitamin B12 import ATP-binding protein BtuD, at 401,388 to 402,500 _03116 MPMX19_03117: MPMX19_03117 - Catabolite control protein A, at 402,642 to 403,649 _03117 MPMX19_03118: MPMX19_03118 - hypothetical protein, at 403,856 to 404,062 _03118 MPMX19_03119: MPMX19_03119 - Transcriptional regulatory protein QseB, at 404,166 to 404,876 _03119 Position (kb) 402 403 404Strain fitness (log2 ratio) -2 -1 0 1 2at 401.836 kb on + strand, within MPMX19_03116at 401.836 kb on + strand, within MPMX19_03116at 402.209 kb on - strand, within MPMX19_03116at 402.209 kb on - strand, within MPMX19_03116at 402.251 kb on - strand, within MPMX19_03116at 402.251 kb on - strand, within MPMX19_03116at 402.251 kb on - strand, within MPMX19_03116at 402.251 kb on - strand, within MPMX19_03116at 402.251 kb on - strand, within MPMX19_03116at 402.251 kb on - strand, within MPMX19_03116at 402.251 kb on - strand, within MPMX19_03116at 402.463 kb on + strandat 402.463 kb on + strandat 402.463 kb on + strandat 402.463 kb on + strandat 402.463 kb on + strandat 402.463 kb on + strandat 402.464 kb on - strandat 402.464 kb on - strandat 402.464 kb on - strandat 402.475 kb on - strandat 402.475 kb on - strandat 402.575 kb on + strandat 402.575 kb on + strandat 402.575 kb on + strandat 402.576 kb on - strandat 402.576 kb on - strandat 402.576 kb on - strandat 402.576 kb on - strandat 402.633 kb on + strandat 402.633 kb on + strandat 402.979 kb on + strand, within MPMX19_03117at 402.979 kb on + strand, within MPMX19_03117at 402.979 kb on + strand, within MPMX19_03117at 402.979 kb on + strand, within MPMX19_03117at 402.980 kb on - strand, within MPMX19_03117at 402.980 kb on - strand, within MPMX19_03117at 402.980 kb on - strand, within MPMX19_03117at 402.980 kb on - strand, within MPMX19_03117at 402.985 kb on + strand, within MPMX19_03117at 402.985 kb on + strand, within MPMX19_03117at 402.985 kb on + strand, within MPMX19_03117at 402.985 kb on + strand, within MPMX19_03117at 402.986 kb on - strand, within MPMX19_03117at 402.986 kb on - strand, within MPMX19_03117at 403.093 kb on + strand, within MPMX19_03117at 403.294 kb on + strand, within MPMX19_03117at 403.294 kb on + strand, within MPMX19_03117at 403.294 kb on + strand, within MPMX19_03117at 403.295 kb on - strand, within MPMX19_03117at 403.295 kb on - strand, within MPMX19_03117at 403.295 kb on - strand, within MPMX19_03117at 403.295 kb on - strand, within MPMX19_03117at 403.405 kb on + strand, within MPMX19_03117at 403.405 kb on + strand, within MPMX19_03117at 403.406 kb on - strand, within MPMX19_03117at 403.406 kb on - strand, within MPMX19_03117at 403.406 kb on - strand, within MPMX19_03117at 403.406 kb on - strand, within MPMX19_03117at 403.406 kb on - strand, within MPMX19_03117at 403.406 kb on - strand, within MPMX19_03117at 403.406 kb on - strand, within MPMX19_03117at 403.406 kb on - strand, within MPMX19_03117at 403.565 kb on + strandat 403.565 kb on + strandat 403.594 kb on - strandat 403.684 kb on + strandat 403.684 kb on + strandat 403.684 kb on + strandat 403.684 kb on + strandat 403.684 kb on + strandat 403.685 kb on - strandat 403.685 kb on - strandat 403.685 kb on - strandat 403.685 kb on - strandat 403.685 kb on - strandat 403.685 kb on - strandat 403.769 kb on + strandat 403.769 kb on + strandat 403.769 kb on + strandat 403.769 kb on + strandat 403.855 kb on + strandat 403.855 kb on + strandat 403.855 kb on + strandat 403.855 kb on + strandat 403.855 kb on + strandat 403.855 kb on + strandat 403.855 kb on + strandat 403.856 kb on - strandat 403.856 kb on - strandat 403.856 kb on - strandat 403.856 kb on - strandat 403.856 kb on - strandat 403.856 kb on - strandat 403.856 kb on - strandat 403.856 kb on - strandat 403.856 kb on - strandat 403.894 kb on - strand, within MPMX19_03118at 404.162 kb on + strandat 404.162 kb on + strandat 404.163 kb on - strandat 404.163 kb on - strandat 404.163 kb on - strandat 404.163 kb on - strandat 404.173 kb on + strandat 404.173 kb on + strandat 404.173 kb on + strandat 404.173 kb on + strandat 404.174 kb on - strandat 404.174 kb on - strandat 404.174 kb on - strandat 404.174 kb on - strandat 404.174 kb on - strandat 404.174 kb on - strandat 404.174 kb on - strandat 404.174 kb on - strandat 404.174 kb on - strandat 404.238 kb on + strand, within MPMX19_03119at 404.239 kb on - strand, within MPMX19_03119at 404.298 kb on + strand, within MPMX19_03119at 404.298 kb on + strand, within MPMX19_03119at 404.298 kb on + strand, within MPMX19_03119at 404.298 kb on + strand, within MPMX19_03119at 404.299 kb on - strand, within MPMX19_03119at 404.299 kb on - strand, within MPMX19_03119at 404.299 kb on - strand, within MPMX19_03119at 404.299 kb on - strand, within MPMX19_03119at 404.299 kb on - strand, within MPMX19_03119at 404.299 kb on - strand, within MPMX19_03119at 404.299 kb on - strand, within MPMX19_03119at 404.299 kb on - strand, within MPMX19_03119at 404.299 kb on - strand, within MPMX19_03119at 404.457 kb on + strand, within MPMX19_03119at 404.457 kb on + strand, within MPMX19_03119at 404.457 kb on + strand, within MPMX19_03119at 404.457 kb on + strand, within MPMX19_03119at 404.457 kb on + strand, within MPMX19_03119at 404.457 kb on + strand, within MPMX19_03119at 404.457 kb on + strand, within MPMX19_03119at 404.457 kb on + strand, within MPMX19_03119at 404.457 kb on + strand, within MPMX19_03119at 404.457 kb on + strand, within MPMX19_03119at 404.458 kb on - strand, within MPMX19_03119at 404.458 kb on - strand, within MPMX19_03119at 404.458 kb on - strand, within MPMX19_03119at 404.458 kb on - strand, within MPMX19_03119at 404.458 kb on - strand, within MPMX19_03119

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; high oxygen
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401,836 + MPMX19_03116 0.40 -0.3
401,836 + MPMX19_03116 0.40 +0.6
402,209 - MPMX19_03116 0.74 -0.8
402,209 - MPMX19_03116 0.74 +0.1
402,251 - MPMX19_03116 0.78 +1.1
402,251 - MPMX19_03116 0.78 -0.3
402,251 - MPMX19_03116 0.78 -1.2
402,251 - MPMX19_03116 0.78 -2.7
402,251 - MPMX19_03116 0.78 -0.9
402,251 - MPMX19_03116 0.78 -0.2
402,251 - MPMX19_03116 0.78 -1.9
402,463 + -0.8
402,463 + -0.4
402,463 + -0.5
402,463 + +0.6
402,463 + +0.3
402,463 + -1.5
402,464 - +0.6
402,464 - -0.0
402,464 - -0.5
402,475 - +0.6
402,475 - -0.5
402,575 + -0.4
402,575 + -0.3
402,575 + +0.5
402,576 - -0.5
402,576 - -0.6
402,576 - +0.5
402,576 - -1.0
402,633 + -0.2
402,633 + -1.3
402,979 + MPMX19_03117 0.33 +1.2
402,979 + MPMX19_03117 0.33 +0.2
402,979 + MPMX19_03117 0.33 -1.3
402,979 + MPMX19_03117 0.33 -2.0
402,980 - MPMX19_03117 0.34 -0.9
402,980 - MPMX19_03117 0.34 -1.3
402,980 - MPMX19_03117 0.34 -0.8
402,980 - MPMX19_03117 0.34 -0.1
402,985 + MPMX19_03117 0.34 +0.6
402,985 + MPMX19_03117 0.34 +1.2
402,985 + MPMX19_03117 0.34 -0.5
402,985 + MPMX19_03117 0.34 -0.7
402,986 - MPMX19_03117 0.34 -0.4
402,986 - MPMX19_03117 0.34 -0.2
403,093 + MPMX19_03117 0.45 -0.6
403,294 + MPMX19_03117 0.65 -0.5
403,294 + MPMX19_03117 0.65 -0.4
403,294 + MPMX19_03117 0.65 -2.1
403,295 - MPMX19_03117 0.65 -0.6
403,295 - MPMX19_03117 0.65 -1.2
403,295 - MPMX19_03117 0.65 -1.8
403,295 - MPMX19_03117 0.65 -1.1
403,405 + MPMX19_03117 0.76 +0.3
403,405 + MPMX19_03117 0.76 +0.3
403,406 - MPMX19_03117 0.76 -1.2
403,406 - MPMX19_03117 0.76 -0.1
403,406 - MPMX19_03117 0.76 -0.7
403,406 - MPMX19_03117 0.76 -0.0
403,406 - MPMX19_03117 0.76 -1.1
403,406 - MPMX19_03117 0.76 -1.4
403,406 - MPMX19_03117 0.76 -1.2
403,406 - MPMX19_03117 0.76 -0.1
403,565 + -0.0
403,565 + -1.6
403,594 - +0.8
403,684 + +1.2
403,684 + +0.6
403,684 + -0.9
403,684 + -0.4
403,684 + -0.0
403,685 - +0.1
403,685 - -1.9
403,685 - -0.3
403,685 - -0.8
403,685 - -1.3
403,685 - -1.6
403,769 + +1.0
403,769 + -0.6
403,769 + -1.2
403,769 + +0.6
403,855 + +0.5
403,855 + -0.2
403,855 + +0.2
403,855 + +0.6
403,855 + -0.6
403,855 + +0.9
403,855 + -0.0
403,856 - -0.2
403,856 - -2.1
403,856 - +0.8
403,856 - -1.2
403,856 - -0.4
403,856 - +0.4
403,856 - -2.3
403,856 - +0.2
403,856 - -0.0
403,894 - MPMX19_03118 0.18 +1.0
404,162 + -0.8
404,162 + -1.4
404,163 - -1.0
404,163 - -1.6
404,163 - -1.6
404,163 - +1.1
404,173 + -1.9
404,173 + -0.6
404,173 + -0.6
404,173 + -1.8
404,174 - +0.2
404,174 - -0.6
404,174 - +0.6
404,174 - +0.6
404,174 - -1.4
404,174 - -0.5
404,174 - +0.7
404,174 - +0.5
404,174 - -1.2
404,238 + MPMX19_03119 0.10 +1.1
404,239 - MPMX19_03119 0.10 -1.5
404,298 + MPMX19_03119 0.19 -1.2
404,298 + MPMX19_03119 0.19 -0.8
404,298 + MPMX19_03119 0.19 -0.9
404,298 + MPMX19_03119 0.19 -0.7
404,299 - MPMX19_03119 0.19 -0.8
404,299 - MPMX19_03119 0.19 +0.6
404,299 - MPMX19_03119 0.19 -0.0
404,299 - MPMX19_03119 0.19 +0.7
404,299 - MPMX19_03119 0.19 -0.1
404,299 - MPMX19_03119 0.19 +2.2
404,299 - MPMX19_03119 0.19 +1.4
404,299 - MPMX19_03119 0.19 -0.4
404,299 - MPMX19_03119 0.19 -0.1
404,457 + MPMX19_03119 0.41 -0.6
404,457 + MPMX19_03119 0.41 +0.4
404,457 + MPMX19_03119 0.41 -1.5
404,457 + MPMX19_03119 0.41 -0.4
404,457 + MPMX19_03119 0.41 -0.0
404,457 + MPMX19_03119 0.41 +0.5
404,457 + MPMX19_03119 0.41 +0.8
404,457 + MPMX19_03119 0.41 -1.6
404,457 + MPMX19_03119 0.41 -0.0
404,457 + MPMX19_03119 0.41 -1.8
404,458 - MPMX19_03119 0.41 +1.2
404,458 - MPMX19_03119 0.41 -1.0
404,458 - MPMX19_03119 0.41 +0.7
404,458 - MPMX19_03119 0.41 -0.5
404,458 - MPMX19_03119 0.41 +1.6

Or see this region's nucleotide sequence