Experiment: NL-CCM; high oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02805 and MPMX19_02806 are separated by 30 nucleotides MPMX19_02806 and MPMX19_02807 are separated by 64 nucleotides
MPMX19_02805: MPMX19_02805 - putative transporter, at 39,804 to 41,057
_02805
MPMX19_02806: MPMX19_02806 - HTH-type transcriptional regulator DmlR, at 41,088 to 42,104
_02806
MPMX19_02807: MPMX19_02807 - L-threonine dehydratase biosynthetic IlvA, at 42,169 to 43,698
_02807
Position (kb) 41
42
43 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 40.406 kb on - strand, within MPMX19_02805 at 40.406 kb on - strand, within MPMX19_02805 at 40.816 kb on + strand, within MPMX19_02805 at 40.816 kb on + strand, within MPMX19_02805 at 40.817 kb on - strand, within MPMX19_02805 at 40.906 kb on + strand, within MPMX19_02805 at 40.906 kb on + strand, within MPMX19_02805 at 40.906 kb on + strand, within MPMX19_02805 at 40.906 kb on + strand, within MPMX19_02805 at 40.906 kb on + strand, within MPMX19_02805 at 40.906 kb on + strand, within MPMX19_02805 at 40.906 kb on + strand, within MPMX19_02805 at 40.907 kb on - strand, within MPMX19_02805 at 40.907 kb on - strand, within MPMX19_02805 at 40.907 kb on - strand, within MPMX19_02805 at 40.909 kb on + strand, within MPMX19_02805 at 40.910 kb on - strand, within MPMX19_02805 at 40.910 kb on - strand, within MPMX19_02805 at 40.910 kb on - strand, within MPMX19_02805 at 40.910 kb on - strand, within MPMX19_02805 at 40.910 kb on - strand, within MPMX19_02805 at 40.910 kb on - strand, within MPMX19_02805 at 41.103 kb on + strand at 41.103 kb on + strand at 41.103 kb on + strand at 41.103 kb on + strand at 41.103 kb on + strand at 41.104 kb on - strand at 41.104 kb on - strand at 41.104 kb on - strand at 41.104 kb on - strand at 41.104 kb on - strand at 41.104 kb on - strand at 41.104 kb on - strand at 41.104 kb on - strand at 41.104 kb on - strand at 41.104 kb on - strand at 41.104 kb on - strand at 41.104 kb on - strand at 41.143 kb on + strand at 41.143 kb on + strand at 41.154 kb on + strand at 41.154 kb on + strand at 41.162 kb on - strand at 41.233 kb on - strand, within MPMX19_02806 at 41.389 kb on - strand, within MPMX19_02806 at 41.532 kb on + strand, within MPMX19_02806 at 41.532 kb on + strand, within MPMX19_02806 at 41.533 kb on - strand, within MPMX19_02806 at 41.533 kb on - strand, within MPMX19_02806 at 41.778 kb on + strand, within MPMX19_02806 at 42.006 kb on + strand at 42.006 kb on + strand at 42.006 kb on + strand at 42.006 kb on + strand at 42.006 kb on + strand at 42.006 kb on + strand at 42.007 kb on - strand at 42.007 kb on - strand at 42.007 kb on - strand at 42.007 kb on - strand at 42.102 kb on + strand at 42.102 kb on + strand at 42.102 kb on + strand at 42.103 kb on - strand at 42.103 kb on - strand at 42.138 kb on + strand at 42.138 kb on + strand at 42.139 kb on - strand at 42.139 kb on - strand at 42.139 kb on - strand at 42.139 kb on - strand at 42.139 kb on - strand at 42.139 kb on - strand at 42.139 kb on - strand at 42.139 kb on - strand at 42.139 kb on - strand at 42.139 kb on - strand at 42.184 kb on + strand at 42.184 kb on + strand at 42.184 kb on + strand at 42.184 kb on + strand at 42.184 kb on + strand at 42.184 kb on + strand at 42.184 kb on + strand at 42.184 kb on + strand at 42.185 kb on - strand at 42.185 kb on - strand at 42.185 kb on - strand at 42.185 kb on - strand at 42.214 kb on + strand at 42.214 kb on + strand at 42.215 kb on - strand at 42.215 kb on - strand at 42.215 kb on - strand at 42.215 kb on - strand at 42.215 kb on - strand at 42.215 kb on - strand at 42.337 kb on + strand, within MPMX19_02807 at 42.337 kb on + strand, within MPMX19_02807 at 42.337 kb on + strand, within MPMX19_02807 at 42.553 kb on + strand, within MPMX19_02807 at 42.553 kb on + strand, within MPMX19_02807 at 42.553 kb on + strand, within MPMX19_02807 at 42.553 kb on + strand, within MPMX19_02807 at 42.553 kb on + strand, within MPMX19_02807 at 42.553 kb on + strand, within MPMX19_02807 at 42.553 kb on + strand, within MPMX19_02807 at 42.553 kb on + strand, within MPMX19_02807 at 42.554 kb on - strand, within MPMX19_02807 at 42.607 kb on + strand, within MPMX19_02807 at 42.607 kb on + strand, within MPMX19_02807 at 42.607 kb on + strand, within MPMX19_02807 at 42.607 kb on + strand, within MPMX19_02807 at 42.607 kb on + strand, within MPMX19_02807 at 42.607 kb on + strand, within MPMX19_02807 at 42.607 kb on + strand, within MPMX19_02807 at 42.607 kb on + strand, within MPMX19_02807 at 42.608 kb on - strand, within MPMX19_02807 at 42.608 kb on - strand, within MPMX19_02807 at 42.608 kb on - strand, within MPMX19_02807 at 42.736 kb on + strand, within MPMX19_02807 at 42.736 kb on + strand, within MPMX19_02807 at 42.736 kb on + strand, within MPMX19_02807 at 42.737 kb on - strand, within MPMX19_02807 at 43.036 kb on + strand, within MPMX19_02807 at 43.036 kb on + strand, within MPMX19_02807 at 43.037 kb on - strand, within MPMX19_02807 at 43.037 kb on - strand, within MPMX19_02807
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; high oxygen remove 40,406 - MPMX19_02805 0.48 -0.1 40,406 - MPMX19_02805 0.48 -0.4 40,816 + MPMX19_02805 0.81 -0.1 40,816 + MPMX19_02805 0.81 -0.2 40,817 - MPMX19_02805 0.81 -0.7 40,906 + MPMX19_02805 0.88 -0.7 40,906 + MPMX19_02805 0.88 -0.2 40,906 + MPMX19_02805 0.88 -0.9 40,906 + MPMX19_02805 0.88 -0.5 40,906 + MPMX19_02805 0.88 -1.0 40,906 + MPMX19_02805 0.88 -0.4 40,906 + MPMX19_02805 0.88 +0.0 40,907 - MPMX19_02805 0.88 +0.7 40,907 - MPMX19_02805 0.88 -0.7 40,907 - MPMX19_02805 0.88 -0.6 40,909 + MPMX19_02805 0.88 -0.4 40,910 - MPMX19_02805 0.88 -0.9 40,910 - MPMX19_02805 0.88 -0.2 40,910 - MPMX19_02805 0.88 +0.0 40,910 - MPMX19_02805 0.88 +0.0 40,910 - MPMX19_02805 0.88 +1.2 40,910 - MPMX19_02805 0.88 -1.3 41,103 + -0.9 41,103 + -1.0 41,103 + -1.4 41,103 + -0.1 41,103 + -0.6 41,104 - -0.1 41,104 - -1.3 41,104 - +0.2 41,104 - +0.2 41,104 - -1.9 41,104 - -0.6 41,104 - -0.2 41,104 - -1.6 41,104 - +0.2 41,104 - +0.7 41,104 - -0.1 41,104 - -1.4 41,143 + -0.4 41,143 + -1.1 41,154 + -0.7 41,154 + -2.1 41,162 - +0.9 41,233 - MPMX19_02806 0.14 -0.5 41,389 - MPMX19_02806 0.30 -0.4 41,532 + MPMX19_02806 0.44 -1.3 41,532 + MPMX19_02806 0.44 -0.8 41,533 - MPMX19_02806 0.44 -1.0 41,533 - MPMX19_02806 0.44 +1.2 41,778 + MPMX19_02806 0.68 +0.8 42,006 + -0.2 42,006 + +0.9 42,006 + +1.6 42,006 + -1.5 42,006 + +0.4 42,006 + -0.1 42,007 - +0.7 42,007 - -1.6 42,007 - -0.4 42,007 - +0.6 42,102 + -0.1 42,102 + -1.6 42,102 + -0.9 42,103 - -0.6 42,103 - -0.1 42,138 + +0.9 42,138 + +0.0 42,139 - +0.0 42,139 - -1.4 42,139 - -0.1 42,139 - -0.6 42,139 - -0.2 42,139 - -0.7 42,139 - -0.1 42,139 - -0.2 42,139 - +0.9 42,139 - +0.3 42,184 + +0.4 42,184 + -1.9 42,184 + -3.5 42,184 + -1.3 42,184 + +0.2 42,184 + -0.3 42,184 + -1.2 42,184 + +1.2 42,185 - -0.7 42,185 - -0.7 42,185 - -0.1 42,185 - +0.0 42,214 + +0.0 42,214 + +0.6 42,215 - -0.7 42,215 - -0.3 42,215 - -0.8 42,215 - +0.1 42,215 - -0.9 42,215 - -1.5 42,337 + MPMX19_02807 0.11 -0.7 42,337 + MPMX19_02807 0.11 +0.5 42,337 + MPMX19_02807 0.11 -1.6 42,553 + MPMX19_02807 0.25 -0.7 42,553 + MPMX19_02807 0.25 +0.8 42,553 + MPMX19_02807 0.25 +0.2 42,553 + MPMX19_02807 0.25 -0.5 42,553 + MPMX19_02807 0.25 +0.6 42,553 + MPMX19_02807 0.25 +1.6 42,553 + MPMX19_02807 0.25 -2.1 42,553 + MPMX19_02807 0.25 -2.0 42,554 - MPMX19_02807 0.25 -0.1 42,607 + MPMX19_02807 0.29 -0.9 42,607 + MPMX19_02807 0.29 +0.6 42,607 + MPMX19_02807 0.29 +0.0 42,607 + MPMX19_02807 0.29 +0.6 42,607 + MPMX19_02807 0.29 -0.9 42,607 + MPMX19_02807 0.29 -0.4 42,607 + MPMX19_02807 0.29 -1.6 42,607 + MPMX19_02807 0.29 +0.5 42,608 - MPMX19_02807 0.29 +2.2 42,608 - MPMX19_02807 0.29 -0.5 42,608 - MPMX19_02807 0.29 -2.1 42,736 + MPMX19_02807 0.37 +0.6 42,736 + MPMX19_02807 0.37 +0.6 42,736 + MPMX19_02807 0.37 +0.1 42,737 - MPMX19_02807 0.37 +0.3 43,036 + MPMX19_02807 0.57 +0.5 43,036 + MPMX19_02807 0.57 -0.3 43,037 - MPMX19_02807 0.57 +0.7 43,037 - MPMX19_02807 0.57 -1.7
Or see this region's nucleotide sequence