Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02775

Experiment: NL-CCM; high oxygen

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NL-CCM; high oxygen
6,596	+		MPMX19_02773	0.69	-0.1
6,596	+		MPMX19_02773	0.69	-2.0
6,596	+		MPMX19_02773	0.69	-0.6
6,596	+		MPMX19_02773	0.69	-0.9
6,597	-		MPMX19_02773	0.69	+0.9
6,597	-		MPMX19_02773	0.69	-0.5
6,597	-		MPMX19_02773	0.69	-0.7
6,597	-		MPMX19_02773	0.69	-0.3
6,728	+		MPMX19_02773	0.79	+0.2
6,728	+		MPMX19_02773	0.79	-1.3
6,728	+		MPMX19_02773	0.79	+1.0
6,728	+		MPMX19_02773	0.79	-0.3
6,728	+		MPMX19_02773	0.79	-0.2
6,728	+		MPMX19_02773	0.79	-0.3
6,728	+		MPMX19_02773	0.79	+0.9
6,728	+		MPMX19_02773	0.79	-0.9
6,728	+		MPMX19_02773	0.79	+1.0
6,728	+		MPMX19_02773	0.79	-1.1
6,729	-		MPMX19_02773	0.79	+1.9
6,729	-		MPMX19_02773	0.79	+1.4
6,729	-		MPMX19_02773	0.79	-0.7
6,729	-		MPMX19_02773	0.79	+1.0
6,729	-		MPMX19_02773	0.79	-0.9
6,729	-		MPMX19_02773	0.79	-0.1
6,764	+		MPMX19_02773	0.82	-0.1
6,764	+		MPMX19_02773	0.82	-0.2
6,764	+		MPMX19_02773	0.82	+0.3
6,764	+		MPMX19_02773	0.82	-0.4
6,765	-		MPMX19_02773	0.82	+0.1
6,765	-		MPMX19_02773	0.82	-0.9
6,977	+				+0.3
6,978	-				-1.1
6,978	-				+0.6
7,042	+				-0.4
7,043	-				-0.9
7,066	+				-0.1
7,066	+				+0.1
7,067	-				-0.6
7,067	-				-0.6
7,087	+		MPMX19_02774	0.13	-0.6
7,087	+		MPMX19_02774	0.13	-0.1
7,087	+		MPMX19_02774	0.13	+1.0
7,087	+		MPMX19_02774	0.13	-1.0
7,087	+		MPMX19_02774	0.13	-2.7
7,087	+		MPMX19_02774	0.13	+0.2
7,087	+		MPMX19_02774	0.13	-1.2
7,088	-		MPMX19_02774	0.13	-0.4
7,088	-		MPMX19_02774	0.13	+0.6
7,088	-		MPMX19_02774	0.13	-1.1
7,088	-		MPMX19_02774	0.13	+0.0
7,088	-		MPMX19_02774	0.13	-0.4
7,520	-				+0.6
7,545	-				+0.8
7,545	-				+0.0
7,557	+				+0.3
7,557	+				-0.7
7,557	+				+0.0
7,557	+				-1.6
7,557	+				+1.0
7,557	+				-0.2
7,557	+				-0.9
7,557	+				+0.2
7,557	+				-0.5
7,557	+				-1.4
7,557	+				-0.1
7,557	+				-0.8
7,558	-				-0.3
7,558	-				-1.0
7,558	-				-1.0
7,558	-				+0.1
7,558	-				-0.1
7,558	-				+0.1
7,558	-				-0.4
7,558	-				-1.0
7,558	-				+1.4
7,558	-				-0.4
7,558	-				-1.6
7,696	-		MPMX19_02775	0.11	-0.5
7,905	+		MPMX19_02775	0.30	-2.9
7,905	+		MPMX19_02775	0.30	-0.2
7,905	+		MPMX19_02775	0.30	-2.7
7,905	+		MPMX19_02775	0.30	+0.0
7,905	+		MPMX19_02775	0.30	+0.7
7,905	+		MPMX19_02775	0.30	+0.3
7,905	+		MPMX19_02775	0.30	-0.2
7,905	+		MPMX19_02775	0.30	-1.4
7,905	+		MPMX19_02775	0.30	-1.1
7,905	+		MPMX19_02775	0.30	+0.0
7,906	-		MPMX19_02775	0.30	-1.0
7,906	-		MPMX19_02775	0.30	+0.5
7,906	-		MPMX19_02775	0.30	+0.4
7,906	-		MPMX19_02775	0.30	-1.0
7,906	-		MPMX19_02775	0.30	+0.2
7,957	-		MPMX19_02775	0.34	+0.3
7,957	-		MPMX19_02775	0.34	-0.6
7,957	-		MPMX19_02775	0.34	-0.8
7,957	-		MPMX19_02775	0.34	-0.3
7,957	-		MPMX19_02775	0.34	+0.6
7,957	-		MPMX19_02775	0.34	-0.3
7,957	-		MPMX19_02775	0.34	-0.7
7,974	+		MPMX19_02775	0.36	-2.2
7,974	+		MPMX19_02775	0.36	+0.0
7,974	+		MPMX19_02775	0.36	-1.8
7,974	+		MPMX19_02775	0.36	+0.3
7,974	+		MPMX19_02775	0.36	-0.1
7,974	+		MPMX19_02775	0.36	-0.7
7,974	+		MPMX19_02775	0.36	+0.6
7,974	+		MPMX19_02775	0.36	+0.6
7,975	-		MPMX19_02775	0.36	-0.2
8,016	+		MPMX19_02775	0.40	-0.4
8,016	+		MPMX19_02775	0.40	+0.1
8,016	+		MPMX19_02775	0.40	-1.2
8,016	+		MPMX19_02775	0.40	-0.8
8,016	+		MPMX19_02775	0.40	-0.2
8,017	-		MPMX19_02775	0.40	+0.1
8,017	-		MPMX19_02775	0.40	-1.7
8,017	-		MPMX19_02775	0.40	+0.8
8,017	-		MPMX19_02775	0.40	+1.0
8,017	-		MPMX19_02775	0.40	+0.5
8,017	-		MPMX19_02775	0.40	+1.2
8,017	-		MPMX19_02775	0.40	+0.5
8,226	+		MPMX19_02775	0.59	-0.6
8,226	+		MPMX19_02775	0.59	-0.9
8,226	+		MPMX19_02775	0.59	+0.6
8,227	-		MPMX19_02775	0.59	+0.3
8,227	-		MPMX19_02775	0.59	-0.9
8,242	-		MPMX19_02775	0.60	-0.7
8,242	-		MPMX19_02775	0.60	+0.0
8,301	+		MPMX19_02775	0.65	+0.4
8,301	+		MPMX19_02775	0.65	+0.9
8,302	-		MPMX19_02775	0.65	+0.0
8,302	-		MPMX19_02775	0.65	+0.4
8,302	-		MPMX19_02775	0.65	-2.1
8,319	+		MPMX19_02775	0.67	-0.1
8,319	+		MPMX19_02775	0.67	-0.9
8,319	+		MPMX19_02775	0.67	-0.9
8,319	+		MPMX19_02775	0.67	+0.2
8,320	-		MPMX19_02775	0.67	+1.2
8,321	+		MPMX19_02775	0.67	-1.9
8,322	-		MPMX19_02775	0.67	+0.6
8,322	-		MPMX19_02775	0.67	+0.6
8,322	-		MPMX19_02775	0.67	-1.0
8,322	-		MPMX19_02775	0.67	-1.6
8,481	+		MPMX19_02775	0.82	+0.4
8,481	+		MPMX19_02775	0.82	+0.0
8,481	+		MPMX19_02775	0.82	+0.8
8,481	+		MPMX19_02775	0.82	-0.7
8,481	+		MPMX19_02775	0.82	+2.1
8,481	+		MPMX19_02775	0.82	-0.8
8,481	+		MPMX19_02775	0.82	-0.2
8,482	-		MPMX19_02775	0.82	-0.4
8,482	-		MPMX19_02775	0.82	+0.4
8,482	-		MPMX19_02775	0.82	-1.1
8,482	-		MPMX19_02775	0.82	+2.0
8,482	-		MPMX19_02775	0.82	-0.1
8,482	-		MPMX19_02775	0.82	+0.2
8,482	-		MPMX19_02775	0.82	-0.8
8,482	-		MPMX19_02775	0.82	+0.1
8,482	-		MPMX19_02775	0.82	-0.4
8,749	+				-0.7
8,749	+				-0.7
8,749	+				+1.4
8,749	+				-1.4
8,749	+				+0.3
8,749	+				-1.5
8,749	+				+0.3
8,749	+				-0.6
8,749	+				+0.1
8,749	+				-2.0
8,749	+				-0.0
8,749	+				-1.9
8,749	+				-0.6
8,750	-				-0.6
8,750	-				-0.4
8,750	-				-0.7
8,750	-				-1.2
8,750	-				-0.1
8,750	-				+0.2
8,750	-				-1.7
8,750	-				+0.5
8,750	-				+0.0
8,750	-				-0.4
8,750	-				-0.3
8,750	-				-0.4
8,750	-				-1.0
8,752	+				-1.2
8,752	+				-2.0
8,752	+				-0.5
8,752	+				+0.6
8,752	+				+0.4
8,753	-				-0.1
8,753	-				-0.9
8,753	-				-0.4
8,753	-				-0.1
8,753	-				-0.4
8,794	+				-0.7
8,794	+				+0.5
8,794	+				-1.0
8,794	+				-1.0
8,794	+				-1.6
8,795	-				-1.9
8,795	-				+1.0
8,795	-				+0.0
8,795	-				-1.0
8,795	-				+0.6
8,795	-				+1.6
8,795	-				-0.7
8,869	+		MPMX19_02776	0.14	+1.7
8,869	+		MPMX19_02776	0.14	+1.0
8,869	+		MPMX19_02776	0.14	+1.0
8,869	+		MPMX19_02776	0.14	-0.1
8,869	+		MPMX19_02776	0.14	+0.9
8,870	-		MPMX19_02776	0.15	+0.4
8,870	-		MPMX19_02776	0.15	-0.4
9,145	+		MPMX19_02776	0.45	+0.0
9,145	+		MPMX19_02776	0.45	-1.7
9,146	-		MPMX19_02776	0.45	-0.2
9,146	-		MPMX19_02776	0.45	-0.1
9,244	+		MPMX19_02776	0.55	-0.2
9,244	+		MPMX19_02776	0.55	+0.1
9,244	+		MPMX19_02776	0.55	+0.0
9,244	+		MPMX19_02776	0.55	+0.4
9,245	-		MPMX19_02776	0.56	-0.3
9,245	-		MPMX19_02776	0.56	-0.3
9,245	-		MPMX19_02776	0.56	+0.1
9,245	-		MPMX19_02776	0.56	+0.0
9,245	-		MPMX19_02776	0.56	+0.2
9,245	-		MPMX19_02776	0.56	+1.1
9,245	-		MPMX19_02776	0.56	-2.1
9,245	-		MPMX19_02776	0.56	-0.2
9,245	-		MPMX19_02776	0.56	-0.1
9,245	-		MPMX19_02776	0.56	-0.7
9,313	+		MPMX19_02776	0.63	-0.2
9,313	+		MPMX19_02776	0.63	+0.9
9,313	+		MPMX19_02776	0.63	+0.0
9,313	+		MPMX19_02776	0.63	-0.6
9,313	+		MPMX19_02776	0.63	-2.7
9,314	-		MPMX19_02776	0.63	-1.6
9,314	-		MPMX19_02776	0.63	-0.3
9,314	-		MPMX19_02776	0.63	-1.6
9,403	+		MPMX19_02776	0.73	+0.3
9,403	+		MPMX19_02776	0.73	-0.6
9,403	+		MPMX19_02776	0.73	-1.9
9,403	+		MPMX19_02776	0.73	-0.3
9,403	+		MPMX19_02776	0.73	+0.1
9,403	+		MPMX19_02776	0.73	-0.1
9,403	+		MPMX19_02776	0.73	-0.6
9,403	+		MPMX19_02776	0.73	-0.2
9,403	+		MPMX19_02776	0.73	+0.1
9,403	+		MPMX19_02776	0.73	-1.0
9,403	+		MPMX19_02776	0.73	-0.4
9,403	+		MPMX19_02776	0.73	-0.3
9,403	+		MPMX19_02776	0.73	+0.5
9,403	+		MPMX19_02776	0.73	+1.3
9,403	+		MPMX19_02776	0.73	-2.2
9,404	-		MPMX19_02776	0.73	-1.1
9,404	-		MPMX19_02776	0.73	-0.7
9,404	-		MPMX19_02776	0.73	-1.6
9,404	-		MPMX19_02776	0.73	-0.9
9,404	-		MPMX19_02776	0.73	-0.1
9,404	-		MPMX19_02776	0.73	-0.4
9,404	-		MPMX19_02776	0.73	+0.7
9,404	-		MPMX19_02776	0.73	-0.5
9,404	-		MPMX19_02776	0.73	-1.9
9,404	-		MPMX19_02776	0.73	-0.6
9,404	-		MPMX19_02776	0.73	-1.7
9,406	+		MPMX19_02776	0.73	+1.2
9,406	+		MPMX19_02776	0.73	-1.7
9,406	+		MPMX19_02776	0.73	-0.9
9,406	+		MPMX19_02776	0.73	-2.2
9,406	+		MPMX19_02776	0.73	-0.1
9,407	-		MPMX19_02776	0.73	+0.4
9,407	-		MPMX19_02776	0.73	-0.7
9,407	-		MPMX19_02776	0.73	+0.0
9,580	+				-1.4
9,580	+				-0.2
9,581	-				-0.4