Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00500

Experiment: NL-CCM; high oxygen

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_00498 and MPMX19_00499 are separated by 301 nucleotidesMPMX19_00499 and MPMX19_00500 are separated by 78 nucleotidesMPMX19_00500 and MPMX19_00501 are separated by 10 nucleotides MPMX19_00498: MPMX19_00498 - Sensor histidine kinase RcsC, at 499,315 to 501,720 _00498 MPMX19_00499: MPMX19_00499 - hypothetical protein, at 502,022 to 502,327 _00499 MPMX19_00500: MPMX19_00500 - hypothetical protein, at 502,406 to 503,209 _00500 MPMX19_00501: MPMX19_00501 - Protein-glutamate methylesterase/protein-glutamine glutaminase, at 503,220 to 504,407 _00501 Position (kb) 502 503 504Strain fitness (log2 ratio) -2 -1 0 1at 501.596 kb on + strandat 501.596 kb on + strandat 501.596 kb on + strandat 501.596 kb on + strandat 501.597 kb on - strandat 501.597 kb on - strandat 501.597 kb on - strandat 501.597 kb on - strandat 501.597 kb on - strandat 501.597 kb on - strandat 501.605 kb on + strandat 501.605 kb on + strandat 501.605 kb on + strandat 501.605 kb on + strandat 501.606 kb on - strandat 501.606 kb on - strandat 501.606 kb on - strandat 501.606 kb on - strandat 501.606 kb on - strandat 501.606 kb on - strandat 501.606 kb on - strandat 501.607 kb on + strandat 501.680 kb on - strandat 501.744 kb on + strandat 501.745 kb on - strandat 501.799 kb on + strandat 501.799 kb on + strandat 501.939 kb on + strandat 501.971 kb on + strandat 502.021 kb on + strandat 502.021 kb on + strandat 502.021 kb on + strandat 502.021 kb on + strandat 502.021 kb on + strandat 502.021 kb on + strandat 502.021 kb on + strandat 502.021 kb on + strandat 502.021 kb on + strandat 502.022 kb on - strandat 502.022 kb on - strandat 502.022 kb on - strandat 502.022 kb on - strandat 502.022 kb on - strandat 502.022 kb on - strandat 502.022 kb on - strandat 502.022 kb on - strandat 502.748 kb on + strand, within MPMX19_00500at 502.748 kb on + strand, within MPMX19_00500at 502.748 kb on + strand, within MPMX19_00500at 502.748 kb on + strand, within MPMX19_00500at 502.748 kb on + strand, within MPMX19_00500at 502.748 kb on + strand, within MPMX19_00500at 502.748 kb on + strand, within MPMX19_00500at 502.748 kb on + strand, within MPMX19_00500at 502.749 kb on - strand, within MPMX19_00500at 502.749 kb on - strand, within MPMX19_00500at 502.749 kb on - strand, within MPMX19_00500at 502.749 kb on - strand, within MPMX19_00500at 502.775 kb on + strand, within MPMX19_00500at 502.775 kb on + strand, within MPMX19_00500at 502.775 kb on + strand, within MPMX19_00500at 502.776 kb on - strand, within MPMX19_00500at 502.776 kb on - strand, within MPMX19_00500at 503.802 kb on + strand, within MPMX19_00501at 503.802 kb on + strand, within MPMX19_00501at 503.802 kb on + strand, within MPMX19_00501at 503.802 kb on + strand, within MPMX19_00501at 503.803 kb on - strand, within MPMX19_00501at 503.803 kb on - strand, within MPMX19_00501at 503.891 kb on + strand, within MPMX19_00501at 503.891 kb on + strand, within MPMX19_00501at 503.891 kb on + strand, within MPMX19_00501at 503.891 kb on + strand, within MPMX19_00501at 503.891 kb on + strand, within MPMX19_00501at 503.891 kb on + strand, within MPMX19_00501at 503.891 kb on + strand, within MPMX19_00501at 503.891 kb on + strand, within MPMX19_00501at 503.891 kb on + strand, within MPMX19_00501at 503.891 kb on + strand, within MPMX19_00501at 503.891 kb on + strand, within MPMX19_00501at 503.892 kb on - strand, within MPMX19_00501at 503.892 kb on - strand, within MPMX19_00501at 503.892 kb on - strand, within MPMX19_00501at 503.892 kb on - strand, within MPMX19_00501at 503.892 kb on - strand, within MPMX19_00501at 503.892 kb on - strand, within MPMX19_00501at 503.892 kb on - strand, within MPMX19_00501at 503.892 kb on - strand, within MPMX19_00501at 503.892 kb on - strand, within MPMX19_00501at 503.892 kb on - strand, within MPMX19_00501at 503.892 kb on - strand, within MPMX19_00501at 503.892 kb on - strand, within MPMX19_00501at 503.921 kb on + strand, within MPMX19_00501at 503.921 kb on + strand, within MPMX19_00501at 503.921 kb on + strand, within MPMX19_00501at 503.921 kb on + strand, within MPMX19_00501at 503.921 kb on + strand, within MPMX19_00501at 503.921 kb on + strand, within MPMX19_00501at 503.921 kb on + strand, within MPMX19_00501at 503.921 kb on + strand, within MPMX19_00501at 503.921 kb on + strand, within MPMX19_00501at 503.921 kb on + strand, within MPMX19_00501at 503.921 kb on + strand, within MPMX19_00501at 503.921 kb on + strand, within MPMX19_00501at 503.921 kb on + strand, within MPMX19_00501at 503.922 kb on - strand, within MPMX19_00501at 503.922 kb on - strand, within MPMX19_00501at 503.922 kb on - strand, within MPMX19_00501at 503.922 kb on - strand, within MPMX19_00501at 503.922 kb on - strand, within MPMX19_00501at 503.922 kb on - strand, within MPMX19_00501at 503.922 kb on - strand, within MPMX19_00501at 503.922 kb on - strand, within MPMX19_00501at 503.922 kb on - strand, within MPMX19_00501at 503.922 kb on - strand, within MPMX19_00501at 503.922 kb on - strand, within MPMX19_00501at 503.922 kb on - strand, within MPMX19_00501at 503.922 kb on - strand, within MPMX19_00501at 503.922 kb on - strand, within MPMX19_00501at 503.922 kb on - strand, within MPMX19_00501at 503.922 kb on - strand, within MPMX19_00501at 504.136 kb on + strand, within MPMX19_00501at 504.137 kb on - strand, within MPMX19_00501at 504.137 kb on - strand, within MPMX19_00501at 504.162 kb on + strand, within MPMX19_00501at 504.162 kb on + strand, within MPMX19_00501at 504.162 kb on + strand, within MPMX19_00501at 504.162 kb on + strand, within MPMX19_00501at 504.162 kb on + strand, within MPMX19_00501at 504.162 kb on + strand, within MPMX19_00501at 504.162 kb on + strand, within MPMX19_00501at 504.162 kb on + strand, within MPMX19_00501at 504.162 kb on + strand, within MPMX19_00501at 504.162 kb on + strand, within MPMX19_00501at 504.163 kb on - strand, within MPMX19_00501at 504.163 kb on - strand, within MPMX19_00501at 504.163 kb on - strand, within MPMX19_00501at 504.163 kb on - strand, within MPMX19_00501at 504.163 kb on - strand, within MPMX19_00501at 504.163 kb on - strand, within MPMX19_00501at 504.163 kb on - strand, within MPMX19_00501at 504.163 kb on - strand, within MPMX19_00501at 504.163 kb on - strand, within MPMX19_00501

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; high oxygen
remove
501,596 + +0.1
501,596 + -0.4
501,596 + -0.0
501,596 + -0.2
501,597 - +0.4
501,597 - -0.5
501,597 - -2.3
501,597 - -1.9
501,597 - +0.4
501,597 - -0.9
501,605 + -0.8
501,605 + +0.1
501,605 + +0.8
501,605 + -1.2
501,606 - -0.6
501,606 - +0.5
501,606 - -0.5
501,606 - -1.6
501,606 - -1.2
501,606 - +0.6
501,606 - -0.8
501,607 + -0.0
501,680 - -1.6
501,744 + -0.0
501,745 - +0.2
501,799 + +0.4
501,799 + -1.0
501,939 + -0.1
501,971 + -0.6
502,021 + -0.9
502,021 + -1.0
502,021 + +0.2
502,021 + -0.8
502,021 + -0.4
502,021 + -1.2
502,021 + +0.1
502,021 + +1.6
502,021 + -0.1
502,022 - -0.8
502,022 - -0.4
502,022 - +0.2
502,022 - -1.4
502,022 - -1.6
502,022 - -1.6
502,022 - -0.9
502,022 - -0.4
502,748 + MPMX19_00500 0.43 +0.3
502,748 + MPMX19_00500 0.43 -1.4
502,748 + MPMX19_00500 0.43 -0.1
502,748 + MPMX19_00500 0.43 +0.1
502,748 + MPMX19_00500 0.43 -1.2
502,748 + MPMX19_00500 0.43 -0.4
502,748 + MPMX19_00500 0.43 -0.4
502,748 + MPMX19_00500 0.43 -0.9
502,749 - MPMX19_00500 0.43 -1.6
502,749 - MPMX19_00500 0.43 -1.5
502,749 - MPMX19_00500 0.43 +0.3
502,749 - MPMX19_00500 0.43 -2.0
502,775 + MPMX19_00500 0.46 +0.2
502,775 + MPMX19_00500 0.46 +0.0
502,775 + MPMX19_00500 0.46 +0.3
502,776 - MPMX19_00500 0.46 -1.2
502,776 - MPMX19_00500 0.46 -0.8
503,802 + MPMX19_00501 0.49 +0.1
503,802 + MPMX19_00501 0.49 -0.9
503,802 + MPMX19_00501 0.49 -0.8
503,802 + MPMX19_00501 0.49 -0.6
503,803 - MPMX19_00501 0.49 -0.2
503,803 - MPMX19_00501 0.49 -1.8
503,891 + MPMX19_00501 0.56 +0.2
503,891 + MPMX19_00501 0.56 -1.4
503,891 + MPMX19_00501 0.56 -0.9
503,891 + MPMX19_00501 0.56 +1.2
503,891 + MPMX19_00501 0.56 -0.4
503,891 + MPMX19_00501 0.56 -0.3
503,891 + MPMX19_00501 0.56 +0.3
503,891 + MPMX19_00501 0.56 +1.6
503,891 + MPMX19_00501 0.56 -0.0
503,891 + MPMX19_00501 0.56 -0.6
503,891 + MPMX19_00501 0.56 -0.2
503,892 - MPMX19_00501 0.57 -0.1
503,892 - MPMX19_00501 0.57 -0.6
503,892 - MPMX19_00501 0.57 -0.6
503,892 - MPMX19_00501 0.57 -0.1
503,892 - MPMX19_00501 0.57 -0.3
503,892 - MPMX19_00501 0.57 -0.8
503,892 - MPMX19_00501 0.57 -1.2
503,892 - MPMX19_00501 0.57 -0.4
503,892 - MPMX19_00501 0.57 -0.5
503,892 - MPMX19_00501 0.57 -0.0
503,892 - MPMX19_00501 0.57 -0.2
503,892 - MPMX19_00501 0.57 -0.4
503,921 + MPMX19_00501 0.59 -0.5
503,921 + MPMX19_00501 0.59 -1.5
503,921 + MPMX19_00501 0.59 +0.6
503,921 + MPMX19_00501 0.59 -1.5
503,921 + MPMX19_00501 0.59 -0.2
503,921 + MPMX19_00501 0.59 +0.0
503,921 + MPMX19_00501 0.59 -0.3
503,921 + MPMX19_00501 0.59 -0.4
503,921 + MPMX19_00501 0.59 -0.9
503,921 + MPMX19_00501 0.59 -0.6
503,921 + MPMX19_00501 0.59 -1.0
503,921 + MPMX19_00501 0.59 -0.0
503,921 + MPMX19_00501 0.59 +1.0
503,922 - MPMX19_00501 0.59 -0.0
503,922 - MPMX19_00501 0.59 +1.6
503,922 - MPMX19_00501 0.59 +1.2
503,922 - MPMX19_00501 0.59 -0.0
503,922 - MPMX19_00501 0.59 -2.4
503,922 - MPMX19_00501 0.59 -0.0
503,922 - MPMX19_00501 0.59 +0.2
503,922 - MPMX19_00501 0.59 +0.9
503,922 - MPMX19_00501 0.59 +1.2
503,922 - MPMX19_00501 0.59 -2.3
503,922 - MPMX19_00501 0.59 +0.2
503,922 - MPMX19_00501 0.59 -0.6
503,922 - MPMX19_00501 0.59 -0.5
503,922 - MPMX19_00501 0.59 +0.3
503,922 - MPMX19_00501 0.59 +0.3
503,922 - MPMX19_00501 0.59 -0.1
504,136 + MPMX19_00501 0.77 -0.2
504,137 - MPMX19_00501 0.77 -0.4
504,137 - MPMX19_00501 0.77 +0.6
504,162 + MPMX19_00501 0.79 +1.2
504,162 + MPMX19_00501 0.79 +1.4
504,162 + MPMX19_00501 0.79 +0.1
504,162 + MPMX19_00501 0.79 -0.4
504,162 + MPMX19_00501 0.79 -1.1
504,162 + MPMX19_00501 0.79 -0.0
504,162 + MPMX19_00501 0.79 -0.8
504,162 + MPMX19_00501 0.79 +0.4
504,162 + MPMX19_00501 0.79 -0.2
504,162 + MPMX19_00501 0.79 -0.5
504,163 - MPMX19_00501 0.79 -0.0
504,163 - MPMX19_00501 0.79 -1.4
504,163 - MPMX19_00501 0.79 -0.6
504,163 - MPMX19_00501 0.79 -1.4
504,163 - MPMX19_00501 0.79 -0.5
504,163 - MPMX19_00501 0.79 -0.4
504,163 - MPMX19_00501 0.79 -1.2
504,163 - MPMX19_00501 0.79 +1.5
504,163 - MPMX19_00501 0.79 +0.2

Or see this region's nucleotide sequence