Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00472

Experiment: NL-CCM; high oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00471 and MPMX19_00472 are separated by 71 nucleotidesMPMX19_00472 and MPMX19_00473 are separated by 312 nucleotides MPMX19_00471: MPMX19_00471 - hypothetical protein, at 469,857 to 470,780 _00471 MPMX19_00472: MPMX19_00472 - Protein HesB, heterocyst, at 470,852 to 471,247 _00472 MPMX19_00473: MPMX19_00473 - hypothetical protein, at 471,560 to 472,072 _00473 Position (kb) 470 471 472Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 469.996 kb on + strand, within MPMX19_00471at 469.996 kb on + strand, within MPMX19_00471at 469.996 kb on + strand, within MPMX19_00471at 469.996 kb on + strand, within MPMX19_00471at 469.996 kb on + strand, within MPMX19_00471at 469.996 kb on + strand, within MPMX19_00471at 469.996 kb on + strand, within MPMX19_00471at 469.996 kb on + strand, within MPMX19_00471at 469.996 kb on + strand, within MPMX19_00471at 469.996 kb on + strand, within MPMX19_00471at 469.996 kb on + strand, within MPMX19_00471at 469.996 kb on + strand, within MPMX19_00471at 469.996 kb on + strand, within MPMX19_00471at 469.996 kb on + strand, within MPMX19_00471at 469.996 kb on + strand, within MPMX19_00471at 469.996 kb on + strand, within MPMX19_00471at 469.996 kb on + strand, within MPMX19_00471at 469.996 kb on + strand, within MPMX19_00471at 469.996 kb on + strand, within MPMX19_00471at 469.996 kb on + strand, within MPMX19_00471at 469.996 kb on + strand, within MPMX19_00471at 469.996 kb on + strand, within MPMX19_00471at 469.996 kb on + strand, within MPMX19_00471at 469.996 kb on + strand, within MPMX19_00471at 469.996 kb on + strand, within MPMX19_00471at 469.996 kb on + strand, within MPMX19_00471at 469.996 kb on + strand, within MPMX19_00471at 469.996 kb on + strand, within MPMX19_00471at 469.996 kb on + strand, within MPMX19_00471at 469.996 kb on + strand, within MPMX19_00471at 469.996 kb on + strand, within MPMX19_00471at 469.996 kb on + strand, within MPMX19_00471at 469.996 kb on + strand, within MPMX19_00471at 469.996 kb on + strand, within MPMX19_00471at 469.996 kb on + strand, within MPMX19_00471at 469.996 kb on + strand, within MPMX19_00471at 469.996 kb on + strand, within MPMX19_00471at 469.996 kb on + strand, within MPMX19_00471at 469.996 kb on + strand, within MPMX19_00471at 469.997 kb on - strand, within MPMX19_00471at 469.997 kb on - strand, within MPMX19_00471at 469.997 kb on - strand, within MPMX19_00471at 469.997 kb on - strand, within MPMX19_00471at 469.997 kb on - strand, within MPMX19_00471at 469.997 kb on - strand, within MPMX19_00471at 469.997 kb on - strand, within MPMX19_00471at 469.997 kb on - strand, within MPMX19_00471at 469.997 kb on - strand, within MPMX19_00471at 469.997 kb on - strand, within MPMX19_00471at 469.997 kb on - strand, within MPMX19_00471at 469.997 kb on - strand, within MPMX19_00471at 469.997 kb on - strand, within MPMX19_00471at 469.997 kb on - strand, within MPMX19_00471at 469.997 kb on - strand, within MPMX19_00471at 469.997 kb on - strand, within MPMX19_00471at 469.997 kb on - strand, within MPMX19_00471at 469.997 kb on - strand, within MPMX19_00471at 469.997 kb on - strand, within MPMX19_00471at 469.997 kb on - strand, within MPMX19_00471at 469.997 kb on - strand, within MPMX19_00471at 469.997 kb on - strand, within MPMX19_00471at 469.997 kb on - strand, within MPMX19_00471at 469.997 kb on - strand, within MPMX19_00471at 469.997 kb on - strand, within MPMX19_00471at 469.997 kb on - strand, within MPMX19_00471at 469.997 kb on - strand, within MPMX19_00471at 469.997 kb on - strand, within MPMX19_00471at 469.997 kb on - strand, within MPMX19_00471at 469.997 kb on - strand, within MPMX19_00471at 469.997 kb on - strand, within MPMX19_00471at 469.997 kb on - strand, within MPMX19_00471at 469.997 kb on - strand, within MPMX19_00471at 470.287 kb on + strand, within MPMX19_00471at 470.287 kb on + strand, within MPMX19_00471at 470.287 kb on + strand, within MPMX19_00471at 470.287 kb on + strand, within MPMX19_00471at 470.287 kb on + strand, within MPMX19_00471at 470.287 kb on + strand, within MPMX19_00471at 470.287 kb on + strand, within MPMX19_00471at 470.287 kb on + strand, within MPMX19_00471at 470.288 kb on - strand, within MPMX19_00471at 470.288 kb on - strand, within MPMX19_00471at 470.288 kb on - strand, within MPMX19_00471at 470.288 kb on - strand, within MPMX19_00471at 470.288 kb on - strand, within MPMX19_00471at 470.288 kb on - strand, within MPMX19_00471at 470.288 kb on - strand, within MPMX19_00471at 470.288 kb on - strand, within MPMX19_00471at 470.288 kb on - strand, within MPMX19_00471at 470.288 kb on - strand, within MPMX19_00471at 470.288 kb on - strand, within MPMX19_00471at 470.288 kb on - strand, within MPMX19_00471at 470.419 kb on + strand, within MPMX19_00471at 470.419 kb on + strand, within MPMX19_00471at 470.419 kb on + strand, within MPMX19_00471at 470.419 kb on + strand, within MPMX19_00471at 470.419 kb on + strand, within MPMX19_00471at 470.419 kb on + strand, within MPMX19_00471at 470.419 kb on + strand, within MPMX19_00471at 470.419 kb on + strand, within MPMX19_00471at 470.419 kb on + strand, within MPMX19_00471at 470.419 kb on + strand, within MPMX19_00471at 470.419 kb on + strand, within MPMX19_00471at 470.419 kb on + strand, within MPMX19_00471at 470.419 kb on + strand, within MPMX19_00471at 470.419 kb on + strand, within MPMX19_00471at 470.419 kb on + strand, within MPMX19_00471at 470.419 kb on + strand, within MPMX19_00471at 470.419 kb on + strand, within MPMX19_00471at 470.419 kb on + strand, within MPMX19_00471at 470.419 kb on + strand, within MPMX19_00471at 470.419 kb on + strand, within MPMX19_00471at 470.419 kb on + strand, within MPMX19_00471at 470.419 kb on + strand, within MPMX19_00471at 470.419 kb on + strand, within MPMX19_00471at 470.419 kb on + strand, within MPMX19_00471at 470.419 kb on + strand, within MPMX19_00471at 470.419 kb on + strand, within MPMX19_00471at 470.419 kb on + strand, within MPMX19_00471at 470.419 kb on + strand, within MPMX19_00471at 470.419 kb on + strand, within MPMX19_00471at 470.419 kb on + strand, within MPMX19_00471at 470.419 kb on + strand, within MPMX19_00471at 470.419 kb on + strand, within MPMX19_00471at 470.419 kb on + strand, within MPMX19_00471at 470.419 kb on + strand, within MPMX19_00471at 470.419 kb on + strand, within MPMX19_00471at 470.419 kb on + strand, within MPMX19_00471at 470.420 kb on - strand, within MPMX19_00471at 470.420 kb on - strand, within MPMX19_00471at 470.420 kb on - strand, within MPMX19_00471at 470.420 kb on - strand, within MPMX19_00471at 470.420 kb on - strand, within MPMX19_00471at 470.420 kb on - strand, within MPMX19_00471at 470.420 kb on - strand, within MPMX19_00471at 470.420 kb on - strand, within MPMX19_00471at 470.420 kb on - strand, within MPMX19_00471at 470.420 kb on - strand, within MPMX19_00471at 470.420 kb on - strand, within MPMX19_00471at 470.420 kb on - strand, within MPMX19_00471at 470.420 kb on - strand, within MPMX19_00471at 470.420 kb on - strand, within MPMX19_00471at 470.420 kb on - strand, within MPMX19_00471at 470.420 kb on - strand, within MPMX19_00471at 470.420 kb on - strand, within MPMX19_00471at 470.420 kb on - strand, within MPMX19_00471at 470.420 kb on - strand, within MPMX19_00471at 470.420 kb on - strand, within MPMX19_00471at 470.497 kb on + strand, within MPMX19_00471at 470.497 kb on + strand, within MPMX19_00471at 470.497 kb on + strand, within MPMX19_00471at 470.498 kb on - strand, within MPMX19_00471at 470.498 kb on - strand, within MPMX19_00471at 470.498 kb on - strand, within MPMX19_00471at 470.498 kb on - strand, within MPMX19_00471at 470.498 kb on - strand, within MPMX19_00471at 470.770 kb on + strandat 470.770 kb on + strandat 470.770 kb on + strandat 470.771 kb on - strandat 470.771 kb on - strandat 470.771 kb on - strandat 470.771 kb on - strandat 470.771 kb on - strandat 470.771 kb on - strandat 470.771 kb on - strandat 470.771 kb on - strandat 470.865 kb on + strandat 470.865 kb on + strandat 470.865 kb on + strandat 470.866 kb on - strandat 470.866 kb on - strandat 470.866 kb on - strandat 470.866 kb on - strandat 471.129 kb on + strand, within MPMX19_00472at 471.129 kb on + strand, within MPMX19_00472at 471.129 kb on + strand, within MPMX19_00472at 471.129 kb on + strand, within MPMX19_00472at 471.129 kb on + strand, within MPMX19_00472at 471.130 kb on - strand, within MPMX19_00472at 471.130 kb on - strand, within MPMX19_00472at 471.301 kb on + strandat 471.302 kb on - strandat 471.302 kb on - strandat 471.302 kb on - strandat 471.302 kb on - strandat 471.490 kb on + strandat 471.490 kb on + strandat 471.490 kb on + strandat 471.490 kb on + strandat 471.490 kb on + strandat 471.490 kb on + strandat 471.491 kb on - strandat 471.491 kb on - strandat 471.491 kb on - strandat 471.491 kb on - strandat 471.491 kb on - strandat 471.491 kb on - strandat 471.491 kb on - strandat 471.491 kb on - strandat 471.491 kb on - strandat 471.737 kb on + strand, within MPMX19_00473at 471.737 kb on + strand, within MPMX19_00473at 471.737 kb on + strand, within MPMX19_00473at 471.738 kb on - strand, within MPMX19_00473at 471.738 kb on - strand, within MPMX19_00473at 471.738 kb on - strand, within MPMX19_00473at 471.746 kb on + strand, within MPMX19_00473at 471.747 kb on - strand, within MPMX19_00473at 471.755 kb on + strand, within MPMX19_00473at 471.755 kb on + strand, within MPMX19_00473at 471.755 kb on + strand, within MPMX19_00473at 471.755 kb on + strand, within MPMX19_00473at 471.755 kb on + strand, within MPMX19_00473at 471.755 kb on + strand, within MPMX19_00473at 471.756 kb on - strand, within MPMX19_00473at 471.756 kb on - strand, within MPMX19_00473at 471.756 kb on - strand, within MPMX19_00473at 472.087 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; high oxygen
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469,996 + MPMX19_00471 0.15 -1.6
469,996 + MPMX19_00471 0.15 -0.3
469,996 + MPMX19_00471 0.15 -0.9
469,996 + MPMX19_00471 0.15 -1.3
469,996 + MPMX19_00471 0.15 -0.2
469,996 + MPMX19_00471 0.15 -0.8
469,996 + MPMX19_00471 0.15 -1.3
469,996 + MPMX19_00471 0.15 -0.4
469,996 + MPMX19_00471 0.15 +1.3
469,996 + MPMX19_00471 0.15 +2.1
469,996 + MPMX19_00471 0.15 +0.4
469,996 + MPMX19_00471 0.15 +0.1
469,996 + MPMX19_00471 0.15 -1.5
469,996 + MPMX19_00471 0.15 -1.6
469,996 + MPMX19_00471 0.15 -0.4
469,996 + MPMX19_00471 0.15 +0.3
469,996 + MPMX19_00471 0.15 -1.4
469,996 + MPMX19_00471 0.15 +0.7
469,996 + MPMX19_00471 0.15 +0.2
469,996 + MPMX19_00471 0.15 +0.4
469,996 + MPMX19_00471 0.15 +0.2
469,996 + MPMX19_00471 0.15 -0.3
469,996 + MPMX19_00471 0.15 -0.4
469,996 + MPMX19_00471 0.15 -1.3
469,996 + MPMX19_00471 0.15 +1.0
469,996 + MPMX19_00471 0.15 -1.2
469,996 + MPMX19_00471 0.15 -1.1
469,996 + MPMX19_00471 0.15 -0.3
469,996 + MPMX19_00471 0.15 -0.0
469,996 + MPMX19_00471 0.15 -0.0
469,996 + MPMX19_00471 0.15 -2.2
469,996 + MPMX19_00471 0.15 -0.1
469,996 + MPMX19_00471 0.15 +0.4
469,996 + MPMX19_00471 0.15 -0.5
469,996 + MPMX19_00471 0.15 -0.8
469,996 + MPMX19_00471 0.15 -1.5
469,996 + MPMX19_00471 0.15 -0.9
469,996 + MPMX19_00471 0.15 -0.1
469,996 + MPMX19_00471 0.15 -0.0
469,997 - MPMX19_00471 0.15 -0.0
469,997 - MPMX19_00471 0.15 -1.1
469,997 - MPMX19_00471 0.15 +0.1
469,997 - MPMX19_00471 0.15 -1.2
469,997 - MPMX19_00471 0.15 -1.0
469,997 - MPMX19_00471 0.15 -0.4
469,997 - MPMX19_00471 0.15 -0.5
469,997 - MPMX19_00471 0.15 +0.4
469,997 - MPMX19_00471 0.15 -0.2
469,997 - MPMX19_00471 0.15 -0.4
469,997 - MPMX19_00471 0.15 -2.2
469,997 - MPMX19_00471 0.15 -0.2
469,997 - MPMX19_00471 0.15 -0.2
469,997 - MPMX19_00471 0.15 +0.2
469,997 - MPMX19_00471 0.15 +0.3
469,997 - MPMX19_00471 0.15 -1.1
469,997 - MPMX19_00471 0.15 -0.3
469,997 - MPMX19_00471 0.15 -0.9
469,997 - MPMX19_00471 0.15 -2.1
469,997 - MPMX19_00471 0.15 +0.8
469,997 - MPMX19_00471 0.15 -1.4
469,997 - MPMX19_00471 0.15 -0.5
469,997 - MPMX19_00471 0.15 +0.6
469,997 - MPMX19_00471 0.15 +0.6
469,997 - MPMX19_00471 0.15 -0.2
469,997 - MPMX19_00471 0.15 -1.4
469,997 - MPMX19_00471 0.15 +0.4
469,997 - MPMX19_00471 0.15 -0.6
469,997 - MPMX19_00471 0.15 +0.4
469,997 - MPMX19_00471 0.15 -1.0
469,997 - MPMX19_00471 0.15 +0.4
469,997 - MPMX19_00471 0.15 -1.3
469,997 - MPMX19_00471 0.15 -0.5
470,287 + MPMX19_00471 0.47 -0.8
470,287 + MPMX19_00471 0.47 -1.9
470,287 + MPMX19_00471 0.47 +0.3
470,287 + MPMX19_00471 0.47 -0.9
470,287 + MPMX19_00471 0.47 +0.7
470,287 + MPMX19_00471 0.47 -1.0
470,287 + MPMX19_00471 0.47 -1.6
470,287 + MPMX19_00471 0.47 -0.6
470,288 - MPMX19_00471 0.47 -0.0
470,288 - MPMX19_00471 0.47 -0.7
470,288 - MPMX19_00471 0.47 -0.1
470,288 - MPMX19_00471 0.47 +0.6
470,288 - MPMX19_00471 0.47 -0.9
470,288 - MPMX19_00471 0.47 -0.7
470,288 - MPMX19_00471 0.47 +0.3
470,288 - MPMX19_00471 0.47 -1.2
470,288 - MPMX19_00471 0.47 -2.8
470,288 - MPMX19_00471 0.47 -1.8
470,288 - MPMX19_00471 0.47 -0.2
470,288 - MPMX19_00471 0.47 +1.1
470,419 + MPMX19_00471 0.61 -0.5
470,419 + MPMX19_00471 0.61 +0.2
470,419 + MPMX19_00471 0.61 -3.1
470,419 + MPMX19_00471 0.61 +1.4
470,419 + MPMX19_00471 0.61 -0.0
470,419 + MPMX19_00471 0.61 -1.4
470,419 + MPMX19_00471 0.61 +0.1
470,419 + MPMX19_00471 0.61 +1.0
470,419 + MPMX19_00471 0.61 -0.4
470,419 + MPMX19_00471 0.61 +0.5
470,419 + MPMX19_00471 0.61 -0.7
470,419 + MPMX19_00471 0.61 -1.3
470,419 + MPMX19_00471 0.61 +0.3
470,419 + MPMX19_00471 0.61 +0.0
470,419 + MPMX19_00471 0.61 +0.6
470,419 + MPMX19_00471 0.61 -0.5
470,419 + MPMX19_00471 0.61 -1.8
470,419 + MPMX19_00471 0.61 -0.4
470,419 + MPMX19_00471 0.61 -1.0
470,419 + MPMX19_00471 0.61 -0.7
470,419 + MPMX19_00471 0.61 +0.6
470,419 + MPMX19_00471 0.61 -1.1
470,419 + MPMX19_00471 0.61 +1.2
470,419 + MPMX19_00471 0.61 -0.1
470,419 + MPMX19_00471 0.61 -0.0
470,419 + MPMX19_00471 0.61 +0.2
470,419 + MPMX19_00471 0.61 -0.8
470,419 + MPMX19_00471 0.61 -0.3
470,419 + MPMX19_00471 0.61 +0.5
470,419 + MPMX19_00471 0.61 -0.0
470,419 + MPMX19_00471 0.61 -0.2
470,419 + MPMX19_00471 0.61 +1.6
470,419 + MPMX19_00471 0.61 -0.4
470,419 + MPMX19_00471 0.61 -1.4
470,419 + MPMX19_00471 0.61 -0.7
470,419 + MPMX19_00471 0.61 -0.6
470,420 - MPMX19_00471 0.61 -0.4
470,420 - MPMX19_00471 0.61 -0.4
470,420 - MPMX19_00471 0.61 +0.6
470,420 - MPMX19_00471 0.61 -0.5
470,420 - MPMX19_00471 0.61 +0.6
470,420 - MPMX19_00471 0.61 +0.7
470,420 - MPMX19_00471 0.61 -0.1
470,420 - MPMX19_00471 0.61 -0.0
470,420 - MPMX19_00471 0.61 -1.6
470,420 - MPMX19_00471 0.61 +0.2
470,420 - MPMX19_00471 0.61 -0.6
470,420 - MPMX19_00471 0.61 -0.7
470,420 - MPMX19_00471 0.61 -0.2
470,420 - MPMX19_00471 0.61 -0.3
470,420 - MPMX19_00471 0.61 -0.8
470,420 - MPMX19_00471 0.61 +1.2
470,420 - MPMX19_00471 0.61 -0.8
470,420 - MPMX19_00471 0.61 -0.2
470,420 - MPMX19_00471 0.61 +0.9
470,420 - MPMX19_00471 0.61 -0.5
470,497 + MPMX19_00471 0.69 +0.4
470,497 + MPMX19_00471 0.69 -2.4
470,497 + MPMX19_00471 0.69 +0.5
470,498 - MPMX19_00471 0.69 +0.1
470,498 - MPMX19_00471 0.69 -1.6
470,498 - MPMX19_00471 0.69 -0.0
470,498 - MPMX19_00471 0.69 -1.0
470,498 - MPMX19_00471 0.69 -0.6
470,770 + -3.1
470,770 + -0.9
470,770 + -0.4
470,771 - -1.3
470,771 - -2.2
470,771 - -0.4
470,771 - -1.5
470,771 - -1.0
470,771 - +1.0
470,771 - -0.8
470,771 - +0.6
470,865 + -0.8
470,865 + +1.6
470,865 + +0.5
470,866 - -0.9
470,866 - -0.4
470,866 - -0.8
470,866 - -1.5
471,129 + MPMX19_00472 0.70 +0.6
471,129 + MPMX19_00472 0.70 -0.3
471,129 + MPMX19_00472 0.70 +1.0
471,129 + MPMX19_00472 0.70 -1.2
471,129 + MPMX19_00472 0.70 +1.1
471,130 - MPMX19_00472 0.70 +0.6
471,130 - MPMX19_00472 0.70 +2.6
471,301 + -0.5
471,302 - +0.6
471,302 - +1.6
471,302 - -0.2
471,302 - -0.4
471,490 + -0.2
471,490 + -2.5
471,490 + +0.2
471,490 + +1.6
471,490 + -0.4
471,490 + +0.7
471,491 - +0.6
471,491 - -0.2
471,491 - -0.8
471,491 - +0.2
471,491 - -0.4
471,491 - +0.6
471,491 - +0.2
471,491 - +0.6
471,491 - +0.3
471,737 + MPMX19_00473 0.35 +0.6
471,737 + MPMX19_00473 0.35 -0.4
471,737 + MPMX19_00473 0.35 -0.8
471,738 - MPMX19_00473 0.35 +0.2
471,738 - MPMX19_00473 0.35 -0.4
471,738 - MPMX19_00473 0.35 -0.6
471,746 + MPMX19_00473 0.36 -0.9
471,747 - MPMX19_00473 0.36 +0.1
471,755 + MPMX19_00473 0.38 -2.0
471,755 + MPMX19_00473 0.38 -0.5
471,755 + MPMX19_00473 0.38 +1.9
471,755 + MPMX19_00473 0.38 -0.6
471,755 + MPMX19_00473 0.38 -0.8
471,755 + MPMX19_00473 0.38 +1.0
471,756 - MPMX19_00473 0.38 +0.7
471,756 - MPMX19_00473 0.38 -0.9
471,756 - MPMX19_00473 0.38 +0.0
472,087 + -0.7

Or see this region's nucleotide sequence