Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF884 and GFF885 are separated by 54 nucleotides GFF885 and GFF886 overlap by 4 nucleotides GFF886 and GFF887 are separated by 11 nucleotides GFF887 and GFF888 overlap by 1 nucleotides
GFF884 - hypothetical protein, at 956,458 to 957,294
GFF884
GFF885 - Chromate transport protein, at 957,349 to 957,966
GFF885
GFF886 - hypothetical protein, at 957,963 to 958,511
GFF886
GFF887 - hypothetical protein, at 958,523 to 959,038
GFF887
GFF888 - hypothetical protein, at 959,038 to 959,610
GFF888
Position (kb) 957
958
959 Strain fitness (log2 ratio) -2
-1
0
1 at 957.052 kb on + strand, within GFF884 at 957.052 kb on + strand, within GFF884 at 957.053 kb on - strand, within GFF884 at 957.053 kb on - strand, within GFF884 at 957.053 kb on - strand, within GFF884 at 957.053 kb on - strand, within GFF884 at 957.053 kb on - strand, within GFF884 at 957.145 kb on + strand, within GFF884 at 957.145 kb on + strand, within GFF884 at 957.146 kb on - strand, within GFF884 at 957.256 kb on + strand at 957.256 kb on + strand at 957.257 kb on - strand at 957.257 kb on - strand at 957.257 kb on - strand at 957.293 kb on - strand at 957.496 kb on + strand, within GFF885 at 957.497 kb on - strand, within GFF885 at 957.548 kb on + strand, within GFF885 at 957.600 kb on + strand, within GFF885 at 957.600 kb on + strand, within GFF885 at 957.600 kb on + strand, within GFF885 at 957.600 kb on + strand, within GFF885 at 957.600 kb on + strand, within GFF885 at 957.600 kb on + strand, within GFF885 at 957.600 kb on + strand, within GFF885 at 957.601 kb on - strand, within GFF885 at 957.601 kb on - strand, within GFF885 at 957.601 kb on - strand, within GFF885 at 957.709 kb on + strand, within GFF885 at 957.710 kb on - strand, within GFF885 at 957.710 kb on - strand, within GFF885 at 957.710 kb on - strand, within GFF885 at 957.931 kb on + strand at 957.931 kb on + strand at 958.116 kb on + strand, within GFF886 at 958.116 kb on + strand, within GFF886 at 958.116 kb on + strand, within GFF886 at 958.116 kb on + strand, within GFF886 at 958.116 kb on + strand, within GFF886 at 958.116 kb on + strand, within GFF886 at 958.116 kb on + strand, within GFF886 at 958.116 kb on + strand, within GFF886 at 958.116 kb on + strand, within GFF886 at 958.116 kb on + strand, within GFF886 at 958.117 kb on - strand, within GFF886 at 958.117 kb on - strand, within GFF886 at 958.117 kb on - strand, within GFF886 at 958.117 kb on - strand, within GFF886 at 958.173 kb on + strand, within GFF886 at 958.334 kb on + strand, within GFF886 at 958.335 kb on - strand, within GFF886 at 958.335 kb on - strand, within GFF886 at 958.422 kb on + strand, within GFF886 at 958.422 kb on + strand, within GFF886 at 958.423 kb on - strand, within GFF886 at 958.467 kb on + strand at 958.467 kb on + strand at 958.468 kb on - strand at 958.468 kb on - strand at 958.468 kb on - strand at 958.468 kb on - strand at 958.468 kb on - strand at 958.495 kb on - strand at 958.509 kb on + strand at 958.509 kb on + strand at 958.510 kb on - strand at 958.524 kb on + strand at 958.525 kb on - strand at 958.525 kb on - strand at 958.525 kb on - strand at 958.741 kb on + strand, within GFF887 at 958.741 kb on + strand, within GFF887 at 958.742 kb on - strand, within GFF887 at 958.742 kb on - strand, within GFF887 at 959.506 kb on + strand, within GFF888
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 957,052 + GFF884 0.71 +1.1 957,052 + GFF884 0.71 -0.7 957,053 - GFF884 0.71 +0.2 957,053 - GFF884 0.71 -0.8 957,053 - GFF884 0.71 +1.2 957,053 - GFF884 0.71 +0.5 957,053 - GFF884 0.71 -2.1 957,145 + GFF884 0.82 +0.3 957,145 + GFF884 0.82 -0.6 957,146 - GFF884 0.82 +0.7 957,256 + +0.6 957,256 + +0.7 957,257 - -0.4 957,257 - +0.6 957,257 - -0.0 957,293 - -0.7 957,496 + GFF885 0.24 +0.8 957,497 - GFF885 0.24 +0.4 957,548 + GFF885 0.32 -0.1 957,600 + GFF885 0.41 +1.1 957,600 + GFF885 0.41 +0.9 957,600 + GFF885 0.41 +0.4 957,600 + GFF885 0.41 -0.1 957,600 + GFF885 0.41 -0.6 957,600 + GFF885 0.41 +0.3 957,600 + GFF885 0.41 -0.8 957,601 - GFF885 0.41 +0.1 957,601 - GFF885 0.41 -0.4 957,601 - GFF885 0.41 -0.1 957,709 + GFF885 0.58 +0.6 957,710 - GFF885 0.58 +1.0 957,710 - GFF885 0.58 -0.7 957,710 - GFF885 0.58 -0.6 957,931 + -1.3 957,931 + +0.5 958,116 + GFF886 0.28 -0.4 958,116 + GFF886 0.28 -0.2 958,116 + GFF886 0.28 -0.7 958,116 + GFF886 0.28 -1.0 958,116 + GFF886 0.28 -2.4 958,116 + GFF886 0.28 -0.1 958,116 + GFF886 0.28 -0.0 958,116 + GFF886 0.28 -0.8 958,116 + GFF886 0.28 -0.8 958,116 + GFF886 0.28 -0.1 958,117 - GFF886 0.28 -0.5 958,117 - GFF886 0.28 +0.4 958,117 - GFF886 0.28 -1.0 958,117 - GFF886 0.28 -0.5 958,173 + GFF886 0.38 -0.8 958,334 + GFF886 0.68 +0.0 958,335 - GFF886 0.68 -0.7 958,335 - GFF886 0.68 +0.5 958,422 + GFF886 0.84 -0.7 958,422 + GFF886 0.84 -0.3 958,423 - GFF886 0.84 -0.6 958,467 + -0.9 958,467 + -0.4 958,468 - -1.1 958,468 - -0.5 958,468 - -1.1 958,468 - -0.1 958,468 - +0.1 958,495 - -0.4 958,509 + +0.2 958,509 + -0.1 958,510 - -0.1 958,524 + -0.4 958,525 - -1.0 958,525 - +0.3 958,525 - +0.6 958,741 + GFF887 0.42 -1.3 958,741 + GFF887 0.42 -0.5 958,742 - GFF887 0.42 +0.1 958,742 - GFF887 0.42 +0.1 959,506 + GFF888 0.82 -0.9
Or see this region's nucleotide sequence