Strain Fitness in Xanthobacter sp. DMC5 around GFF850

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF849 and GFF850 overlap by 4 nucleotidesGFF850 and GFF851 are separated by 169 nucleotides GFF849 - Sensory histidine kinase/phosphatase NtrB, at 915,424 to 916,680 GFF849 GFF850 - tRNA-dihydrouridine synthase B, at 916,677 to 917,696 GFF850 GFF851 - Bifunctional enzyme IspD/IspF, at 917,866 to 919,065 GFF851 Position (kb) 916 917 918Strain fitness (log2 ratio) -1 0 1at 916.708 kb on + strandat 916.897 kb on + strand, within GFF850at 917.393 kb on + strand, within GFF850at 917.394 kb on - strand, within GFF850at 917.394 kb on - strand, within GFF850at 917.394 kb on - strand, within GFF850

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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916,708 + -1.1
916,897 + GFF850 0.22 +0.5
917,393 + GFF850 0.70 +1.4
917,394 - GFF850 0.70 +0.0
917,394 - GFF850 0.70 +0.3
917,394 - GFF850 0.70 -1.1

Or see this region's nucleotide sequence