Strain Fitness in Xanthobacter sp. DMC5 around GFF804

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF803 and GFF804 are separated by 62 nucleotidesGFF804 and GFF805 are separated by 412 nucleotides GFF803 - Periplasmic dipeptide transport protein, at 856,577 to 858,190 GFF803 GFF804 - putative FMNH2-dependent monooxygenase SfnC, at 858,253 to 859,494 GFF804 GFF805 - Cysteine desulfurase, at 859,907 to 861,886 GFF805 Position (kb) 858 859 860Strain fitness (log2 ratio) -2 -1 0 1 2at 857.328 kb on + strand, within GFF803at 857.328 kb on + strand, within GFF803at 857.328 kb on + strand, within GFF803at 857.328 kb on + strand, within GFF803at 857.328 kb on + strand, within GFF803at 857.329 kb on - strand, within GFF803at 857.430 kb on + strand, within GFF803at 857.430 kb on + strand, within GFF803at 857.430 kb on + strand, within GFF803at 857.430 kb on + strand, within GFF803at 857.430 kb on + strand, within GFF803at 857.430 kb on + strand, within GFF803at 857.431 kb on - strand, within GFF803at 857.431 kb on - strand, within GFF803at 857.431 kb on - strand, within GFF803at 857.431 kb on - strand, within GFF803at 857.508 kb on + strand, within GFF803at 857.530 kb on - strand, within GFF803at 857.530 kb on - strand, within GFF803at 857.530 kb on - strand, within GFF803at 857.530 kb on - strand, within GFF803at 857.736 kb on + strand, within GFF803at 857.737 kb on - strand, within GFF803at 857.737 kb on - strand, within GFF803at 857.823 kb on + strand, within GFF803at 857.823 kb on + strand, within GFF803at 857.824 kb on - strand, within GFF803at 857.824 kb on - strand, within GFF803at 857.961 kb on + strand, within GFF803at 857.961 kb on + strand, within GFF803at 857.961 kb on + strand, within GFF803at 857.961 kb on + strand, within GFF803at 858.320 kb on + strandat 858.320 kb on + strandat 858.320 kb on + strandat 858.320 kb on + strandat 858.320 kb on + strandat 858.321 kb on - strandat 858.593 kb on + strand, within GFF804at 858.593 kb on + strand, within GFF804at 858.594 kb on - strand, within GFF804at 858.594 kb on - strand, within GFF804at 858.671 kb on + strand, within GFF804at 858.671 kb on + strand, within GFF804at 858.671 kb on + strand, within GFF804at 858.753 kb on - strand, within GFF804at 858.777 kb on - strand, within GFF804at 858.845 kb on + strand, within GFF804at 859.007 kb on + strand, within GFF804at 859.007 kb on + strand, within GFF804at 859.007 kb on + strand, within GFF804at 859.007 kb on + strand, within GFF804at 859.008 kb on - strand, within GFF804at 859.010 kb on + strand, within GFF804at 859.011 kb on - strand, within GFF804at 859.011 kb on - strand, within GFF804at 859.011 kb on - strand, within GFF804at 859.102 kb on - strand, within GFF804at 859.181 kb on + strand, within GFF804at 859.181 kb on + strand, within GFF804at 859.329 kb on + strand, within GFF804at 859.330 kb on - strand, within GFF804at 859.374 kb on - strandat 859.374 kb on - strandat 859.645 kb on + strandat 859.645 kb on + strandat 859.645 kb on + strandat 859.646 kb on - strandat 859.646 kb on - strandat 859.964 kb on + strandat 859.965 kb on - strandat 859.983 kb on + strandat 859.984 kb on - strandat 859.984 kb on - strandat 860.227 kb on - strand, within GFF805at 860.262 kb on + strand, within GFF805at 860.263 kb on - strand, within GFF805at 860.263 kb on - strand, within GFF805at 860.263 kb on - strand, within GFF805at 860.263 kb on - strand, within GFF805at 860.340 kb on + strand, within GFF805at 860.340 kb on + strand, within GFF805at 860.341 kb on - strand, within GFF805at 860.427 kb on + strand, within GFF805

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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857,328 + GFF803 0.47 -0.7
857,328 + GFF803 0.47 -0.0
857,328 + GFF803 0.47 +0.1
857,328 + GFF803 0.47 -0.8
857,328 + GFF803 0.47 +0.2
857,329 - GFF803 0.47 -0.1
857,430 + GFF803 0.53 +0.2
857,430 + GFF803 0.53 -2.1
857,430 + GFF803 0.53 +1.2
857,430 + GFF803 0.53 -0.0
857,430 + GFF803 0.53 +0.5
857,430 + GFF803 0.53 +1.2
857,431 - GFF803 0.53 -0.8
857,431 - GFF803 0.53 +0.2
857,431 - GFF803 0.53 +0.3
857,431 - GFF803 0.53 +0.1
857,508 + GFF803 0.58 -0.3
857,530 - GFF803 0.59 -0.4
857,530 - GFF803 0.59 -0.1
857,530 - GFF803 0.59 -1.1
857,530 - GFF803 0.59 +0.1
857,736 + GFF803 0.72 -0.4
857,737 - GFF803 0.72 -0.2
857,737 - GFF803 0.72 -0.5
857,823 + GFF803 0.77 +0.0
857,823 + GFF803 0.77 -0.5
857,824 - GFF803 0.77 +0.4
857,824 - GFF803 0.77 -1.8
857,961 + GFF803 0.86 -0.3
857,961 + GFF803 0.86 -0.1
857,961 + GFF803 0.86 -0.2
857,961 + GFF803 0.86 +1.0
858,320 + +0.4
858,320 + -0.3
858,320 + -0.3
858,320 + +0.1
858,320 + +0.7
858,321 - -1.1
858,593 + GFF804 0.27 -0.5
858,593 + GFF804 0.27 -0.5
858,594 - GFF804 0.27 -2.0
858,594 - GFF804 0.27 -0.1
858,671 + GFF804 0.34 -0.3
858,671 + GFF804 0.34 +1.4
858,671 + GFF804 0.34 -0.3
858,753 - GFF804 0.40 -0.7
858,777 - GFF804 0.42 -0.8
858,845 + GFF804 0.48 +0.9
859,007 + GFF804 0.61 +0.3
859,007 + GFF804 0.61 -0.0
859,007 + GFF804 0.61 -1.1
859,007 + GFF804 0.61 -1.3
859,008 - GFF804 0.61 +1.0
859,010 + GFF804 0.61 -0.3
859,011 - GFF804 0.61 +1.3
859,011 - GFF804 0.61 -0.1
859,011 - GFF804 0.61 +1.9
859,102 - GFF804 0.68 -0.2
859,181 + GFF804 0.75 +0.2
859,181 + GFF804 0.75 +0.2
859,329 + GFF804 0.87 -0.8
859,330 - GFF804 0.87 +0.2
859,374 - +0.3
859,374 - -0.3
859,645 + +0.6
859,645 + -0.4
859,645 + -1.8
859,646 - -0.3
859,646 - -0.1
859,964 + +0.6
859,965 - -0.2
859,983 + -1.0
859,984 - -1.3
859,984 - -1.1
860,227 - GFF805 0.16 -0.3
860,262 + GFF805 0.18 +0.7
860,263 - GFF805 0.18 -0.8
860,263 - GFF805 0.18 +0.1
860,263 - GFF805 0.18 +0.3
860,263 - GFF805 0.18 +1.0
860,340 + GFF805 0.22 -1.0
860,340 + GFF805 0.22 -1.6
860,341 - GFF805 0.22 +0.3
860,427 + GFF805 0.26 -0.5

Or see this region's nucleotide sequence