Strain Fitness in Xanthobacter sp. DMC5 around GFF772

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF770 and GFF771 are separated by 20 nucleotidesGFF771 and GFF772 are separated by 86 nucleotidesGFF772 and GFF773 are separated by 174 nucleotides GFF770 - Aliphatic sulfonates import ATP-binding protein SsuB, at 822,523 to 823,308 GFF770 GFF771 - Putative aliphatic sulfonates transport permease protein SsuC, at 823,329 to 824,180 GFF771 GFF772 - hypothetical protein, at 824,267 to 825,370 GFF772 GFF773 - hypothetical protein, at 825,545 to 826,384 GFF773 Position (kb) 824 825 826Strain fitness (log2 ratio) -2 -1 0 1at 823.316 kb on - strandat 823.340 kb on - strandat 823.547 kb on - strand, within GFF771at 823.643 kb on + strand, within GFF771at 823.643 kb on + strand, within GFF771at 823.644 kb on - strand, within GFF771at 823.645 kb on + strand, within GFF771at 823.646 kb on - strand, within GFF771at 823.646 kb on - strand, within GFF771at 823.646 kb on - strand, within GFF771at 823.646 kb on - strand, within GFF771at 823.882 kb on + strand, within GFF771at 823.882 kb on + strand, within GFF771at 823.883 kb on - strand, within GFF771at 823.883 kb on - strand, within GFF771at 824.014 kb on + strand, within GFF771at 824.014 kb on + strand, within GFF771at 824.014 kb on + strand, within GFF771at 824.015 kb on - strand, within GFF771at 824.015 kb on - strand, within GFF771at 824.212 kb on + strandat 824.213 kb on - strandat 824.213 kb on - strandat 824.274 kb on + strandat 824.379 kb on + strand, within GFF772at 824.379 kb on + strand, within GFF772at 824.380 kb on - strand, within GFF772at 824.380 kb on - strand, within GFF772at 824.541 kb on + strand, within GFF772at 824.541 kb on + strand, within GFF772at 824.541 kb on + strand, within GFF772at 824.541 kb on + strand, within GFF772at 824.541 kb on + strand, within GFF772at 824.542 kb on - strand, within GFF772at 824.542 kb on - strand, within GFF772at 824.542 kb on - strand, within GFF772at 824.542 kb on - strand, within GFF772at 824.542 kb on - strand, within GFF772at 824.599 kb on - strand, within GFF772at 824.599 kb on - strand, within GFF772at 824.628 kb on + strand, within GFF772at 824.629 kb on - strand, within GFF772at 824.655 kb on + strand, within GFF772at 824.655 kb on + strand, within GFF772at 824.656 kb on - strand, within GFF772at 824.656 kb on - strand, within GFF772at 824.656 kb on - strand, within GFF772at 824.656 kb on - strand, within GFF772at 824.827 kb on + strand, within GFF772at 824.828 kb on - strand, within GFF772at 824.886 kb on + strand, within GFF772at 824.887 kb on - strand, within GFF772at 824.887 kb on - strand, within GFF772at 825.054 kb on + strand, within GFF772at 825.054 kb on + strand, within GFF772at 825.054 kb on + strand, within GFF772at 825.055 kb on - strand, within GFF772at 825.055 kb on - strand, within GFF772at 825.055 kb on - strand, within GFF772at 825.055 kb on - strand, within GFF772at 825.183 kb on + strand, within GFF772at 825.359 kb on + strandat 825.570 kb on + strandat 825.571 kb on - strandat 825.571 kb on - strandat 825.631 kb on - strand, within GFF773at 825.735 kb on + strand, within GFF773at 825.736 kb on - strand, within GFF773at 825.737 kb on + strand, within GFF773at 825.737 kb on + strand, within GFF773at 826.333 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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823,316 - -0.7
823,340 - +0.6
823,547 - GFF771 0.26 -0.8
823,643 + GFF771 0.37 -1.2
823,643 + GFF771 0.37 -0.6
823,644 - GFF771 0.37 +1.5
823,645 + GFF771 0.37 -0.6
823,646 - GFF771 0.37 -0.2
823,646 - GFF771 0.37 +0.5
823,646 - GFF771 0.37 -0.0
823,646 - GFF771 0.37 +1.4
823,882 + GFF771 0.65 -0.4
823,882 + GFF771 0.65 -0.7
823,883 - GFF771 0.65 +0.3
823,883 - GFF771 0.65 +0.7
824,014 + GFF771 0.80 -1.2
824,014 + GFF771 0.80 -1.3
824,014 + GFF771 0.80 +0.4
824,015 - GFF771 0.81 +0.1
824,015 - GFF771 0.81 -0.2
824,212 + +0.1
824,213 - +0.6
824,213 - +0.1
824,274 + -0.1
824,379 + GFF772 0.10 -0.4
824,379 + GFF772 0.10 +0.2
824,380 - GFF772 0.10 +1.0
824,380 - GFF772 0.10 +0.8
824,541 + GFF772 0.25 -0.0
824,541 + GFF772 0.25 -0.6
824,541 + GFF772 0.25 -0.8
824,541 + GFF772 0.25 -0.1
824,541 + GFF772 0.25 -0.7
824,542 - GFF772 0.25 +0.9
824,542 - GFF772 0.25 +0.5
824,542 - GFF772 0.25 +0.3
824,542 - GFF772 0.25 -1.9
824,542 - GFF772 0.25 -0.6
824,599 - GFF772 0.30 -0.3
824,599 - GFF772 0.30 -0.2
824,628 + GFF772 0.33 -0.3
824,629 - GFF772 0.33 +0.1
824,655 + GFF772 0.35 -0.7
824,655 + GFF772 0.35 -0.5
824,656 - GFF772 0.35 +1.5
824,656 - GFF772 0.35 -1.3
824,656 - GFF772 0.35 -0.3
824,656 - GFF772 0.35 -0.6
824,827 + GFF772 0.51 -0.3
824,828 - GFF772 0.51 +0.4
824,886 + GFF772 0.56 -1.6
824,887 - GFF772 0.56 +0.9
824,887 - GFF772 0.56 +0.1
825,054 + GFF772 0.71 -0.5
825,054 + GFF772 0.71 +0.2
825,054 + GFF772 0.71 +0.0
825,055 - GFF772 0.71 +0.4
825,055 - GFF772 0.71 -0.8
825,055 - GFF772 0.71 +0.4
825,055 - GFF772 0.71 -0.8
825,183 + GFF772 0.83 +0.0
825,359 + -1.3
825,570 + -0.2
825,571 - -0.7
825,571 - +0.2
825,631 - GFF773 0.10 +0.3
825,735 + GFF773 0.23 -0.5
825,736 - GFF773 0.23 -2.2
825,737 + GFF773 0.23 +1.3
825,737 + GFF773 0.23 -0.3
826,333 + -0.0

Or see this region's nucleotide sequence