Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF733 and GFF734 overlap by 4 nucleotides GFF734 and GFF735 overlap by 1 nucleotides GFF735 and GFF736 overlap by 1 nucleotides
GFF733 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 779,042 to 779,815
GFF733
GFF734 - putative amino-acid import ATP-binding protein YxeO, at 779,812 to 780,756
GFF734
GFF735 - hypothetical protein, at 780,756 to 782,243
GFF735
GFF736 - High-affinity branched-chain amino acid transport system permease protein LivH, at 782,243 to 783,160
GFF736
Position (kb) 780
781
782
783 Strain fitness (log2 ratio) -2
-1
0
1
2 at 779.867 kb on + strand at 779.867 kb on + strand at 779.868 kb on - strand at 780.212 kb on + strand, within GFF734 at 780.431 kb on + strand, within GFF734 at 780.431 kb on + strand, within GFF734 at 780.431 kb on + strand, within GFF734 at 780.860 kb on + strand at 780.861 kb on - strand at 780.898 kb on + strand at 781.436 kb on + strand, within GFF735 at 781.436 kb on + strand, within GFF735 at 781.437 kb on - strand, within GFF735 at 781.437 kb on - strand, within GFF735 at 781.504 kb on + strand, within GFF735 at 781.504 kb on + strand, within GFF735 at 781.677 kb on - strand, within GFF735 at 781.693 kb on + strand, within GFF735 at 781.694 kb on - strand, within GFF735 at 781.694 kb on - strand, within GFF735 at 781.706 kb on - strand, within GFF735 at 781.764 kb on + strand, within GFF735 at 781.765 kb on - strand, within GFF735 at 781.768 kb on + strand, within GFF735 at 781.768 kb on + strand, within GFF735 at 781.769 kb on - strand, within GFF735 at 781.769 kb on - strand, within GFF735 at 781.780 kb on + strand, within GFF735 at 781.781 kb on - strand, within GFF735 at 782.036 kb on - strand, within GFF735 at 782.039 kb on + strand, within GFF735 at 782.040 kb on - strand, within GFF735 at 782.040 kb on - strand, within GFF735 at 782.040 kb on - strand, within GFF735 at 782.040 kb on - strand, within GFF735 at 782.040 kb on - strand, within GFF735 at 782.040 kb on - strand, within GFF735 at 782.040 kb on - strand, within GFF735 at 782.040 kb on - strand, within GFF735 at 782.040 kb on - strand, within GFF735 at 782.334 kb on + strand at 782.334 kb on + strand at 782.394 kb on - strand, within GFF736 at 782.394 kb on - strand, within GFF736 at 782.490 kb on + strand, within GFF736 at 782.493 kb on + strand, within GFF736 at 782.493 kb on + strand, within GFF736 at 782.494 kb on - strand, within GFF736 at 782.494 kb on - strand, within GFF736 at 782.494 kb on - strand, within GFF736 at 782.502 kb on + strand, within GFF736 at 782.503 kb on - strand, within GFF736 at 782.503 kb on - strand, within GFF736 at 782.503 kb on - strand, within GFF736 at 782.653 kb on - strand, within GFF736 at 782.706 kb on + strand, within GFF736 at 782.707 kb on - strand, within GFF736 at 782.724 kb on + strand, within GFF736 at 782.724 kb on + strand, within GFF736 at 782.724 kb on + strand, within GFF736 at 782.965 kb on + strand, within GFF736 at 782.965 kb on + strand, within GFF736 at 782.965 kb on + strand, within GFF736 at 782.966 kb on - strand, within GFF736 at 783.108 kb on + strand at 783.109 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 779,867 + +0.1 779,867 + -0.6 779,868 - +0.8 780,212 + GFF734 0.42 +0.8 780,431 + GFF734 0.66 +0.0 780,431 + GFF734 0.66 +0.6 780,431 + GFF734 0.66 +0.1 780,860 + -0.1 780,861 - +0.0 780,898 + +0.4 781,436 + GFF735 0.46 -1.0 781,436 + GFF735 0.46 -0.0 781,437 - GFF735 0.46 -0.1 781,437 - GFF735 0.46 -0.6 781,504 + GFF735 0.50 +1.0 781,504 + GFF735 0.50 +0.2 781,677 - GFF735 0.62 +0.6 781,693 + GFF735 0.63 +1.8 781,694 - GFF735 0.63 +0.7 781,694 - GFF735 0.63 -2.4 781,706 - GFF735 0.64 +0.1 781,764 + GFF735 0.68 +0.3 781,765 - GFF735 0.68 +0.6 781,768 + GFF735 0.68 +1.2 781,768 + GFF735 0.68 +0.8 781,769 - GFF735 0.68 -0.0 781,769 - GFF735 0.68 +0.8 781,780 + GFF735 0.69 -0.4 781,781 - GFF735 0.69 -1.6 782,036 - GFF735 0.86 +0.5 782,039 + GFF735 0.86 +1.8 782,040 - GFF735 0.86 +0.1 782,040 - GFF735 0.86 -0.2 782,040 - GFF735 0.86 +0.5 782,040 - GFF735 0.86 -2.2 782,040 - GFF735 0.86 -0.8 782,040 - GFF735 0.86 -0.4 782,040 - GFF735 0.86 +0.6 782,040 - GFF735 0.86 -1.9 782,040 - GFF735 0.86 -0.4 782,334 + -1.3 782,334 + -0.4 782,394 - GFF736 0.16 -1.3 782,394 - GFF736 0.16 -0.1 782,490 + GFF736 0.27 +0.2 782,493 + GFF736 0.27 +0.9 782,493 + GFF736 0.27 +0.2 782,494 - GFF736 0.27 +0.2 782,494 - GFF736 0.27 -0.8 782,494 - GFF736 0.27 +0.4 782,502 + GFF736 0.28 +0.2 782,503 - GFF736 0.28 +0.3 782,503 - GFF736 0.28 +0.8 782,503 - GFF736 0.28 +0.7 782,653 - GFF736 0.45 +1.3 782,706 + GFF736 0.50 +0.1 782,707 - GFF736 0.51 -0.6 782,724 + GFF736 0.52 -1.3 782,724 + GFF736 0.52 -0.4 782,724 + GFF736 0.52 +0.4 782,965 + GFF736 0.79 -0.0 782,965 + GFF736 0.79 +0.3 782,965 + GFF736 0.79 -0.4 782,966 - GFF736 0.79 +0.7 783,108 + -0.1 783,109 - +0.1
Or see this region's nucleotide sequence