Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF669 and GFF670 overlap by 4 nucleotides GFF670 and GFF671 are separated by 107 nucleotides GFF671 and GFF672 are separated by 115 nucleotides GFF672 and GFF673 are separated by 152 nucleotides
GFF669 - Adaptive-response sensory-kinase SasA, at 720,070 to 721,647
GFF669
GFF670 - Response regulator protein TmoT, at 721,644 to 722,264
GFF670
GFF671 - hypothetical protein, at 722,372 to 722,866
GFF671
GFF672 - Transcription elongation factor GreB, at 722,982 to 723,458
GFF672
GFF673 - Maltose regulon regulatory protein MalI, at 723,611 to 724,735
GFF673
Position (kb) 722
723 Strain fitness (log2 ratio) -1
0
1 at 721.398 kb on - strand, within GFF669 at 721.662 kb on + strand at 721.663 kb on - strand at 721.663 kb on - strand at 722.236 kb on + strand at 722.236 kb on + strand at 722.240 kb on + strand at 722.241 kb on - strand at 722.241 kb on - strand at 722.241 kb on - strand at 722.241 kb on - strand at 722.247 kb on - strand at 722.247 kb on - strand at 722.297 kb on + strand at 722.298 kb on - strand at 722.525 kb on + strand, within GFF671 at 722.525 kb on + strand, within GFF671 at 722.526 kb on - strand, within GFF671 at 722.526 kb on - strand, within GFF671 at 722.526 kb on - strand, within GFF671 at 722.526 kb on - strand, within GFF671 at 722.922 kb on - strand at 723.198 kb on + strand, within GFF672 at 723.363 kb on + strand, within GFF672 at 723.363 kb on + strand, within GFF672 at 723.363 kb on + strand, within GFF672 at 723.364 kb on - strand, within GFF672 at 723.364 kb on - strand, within GFF672 at 723.460 kb on - strand at 723.520 kb on + strand at 723.852 kb on - strand, within GFF673 at 723.852 kb on - strand, within GFF673
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 721,398 - GFF669 0.84 +1.4 721,662 + +0.1 721,663 - +0.3 721,663 - -0.5 722,236 + -0.5 722,236 + -0.6 722,240 + -1.0 722,241 - -0.6 722,241 - -0.2 722,241 - +0.7 722,241 - +0.1 722,247 - -0.8 722,247 - -0.8 722,297 + -0.6 722,298 - -0.2 722,525 + GFF671 0.31 +0.3 722,525 + GFF671 0.31 +0.6 722,526 - GFF671 0.31 +0.8 722,526 - GFF671 0.31 -1.0 722,526 - GFF671 0.31 +0.1 722,526 - GFF671 0.31 -0.1 722,922 - -0.3 723,198 + GFF672 0.45 +1.0 723,363 + GFF672 0.80 -0.1 723,363 + GFF672 0.80 -0.4 723,363 + GFF672 0.80 +0.8 723,364 - GFF672 0.80 -1.0 723,364 - GFF672 0.80 -0.3 723,460 - +0.6 723,520 + +1.1 723,852 - GFF673 0.21 -0.5 723,852 - GFF673 0.21 -0.3
Or see this region's nucleotide sequence