Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF634 and GFF635 are separated by 168 nucleotides GFF635 and GFF636 are separated by 41 nucleotides GFF636 and GFF637 are separated by 295 nucleotides
GFF634 - Thermostable carboxypeptidase 1, at 676,333 to 677,823
GFF634
GFF635 - Heme oxygenase (staphylobilin-producing), at 677,992 to 678,327
GFF635
GFF636 - Heme/hemopexin utilization protein C, at 678,369 to 680,576
GFF636
GFF637 - Vitamin B12-binding protein, at 680,872 to 681,834
GFF637
Position (kb) 678
679
680
681 Strain fitness (log2 ratio) -1
0
1
2 at 677.372 kb on + strand, within GFF634 at 677.813 kb on + strand at 677.814 kb on - strand at 677.814 kb on - strand at 677.964 kb on + strand at 677.964 kb on + strand at 677.964 kb on + strand at 677.964 kb on + strand at 678.060 kb on + strand, within GFF635 at 678.062 kb on + strand, within GFF635 at 678.062 kb on + strand, within GFF635 at 678.062 kb on + strand, within GFF635 at 678.063 kb on - strand, within GFF635 at 678.173 kb on + strand, within GFF635 at 678.173 kb on + strand, within GFF635 at 678.174 kb on - strand, within GFF635 at 678.174 kb on - strand, within GFF635 at 678.174 kb on - strand, within GFF635 at 678.182 kb on + strand, within GFF635 at 678.182 kb on + strand, within GFF635 at 678.182 kb on + strand, within GFF635 at 678.183 kb on - strand, within GFF635 at 678.245 kb on + strand, within GFF635 at 678.246 kb on - strand, within GFF635 at 678.472 kb on + strand at 678.551 kb on - strand at 678.793 kb on + strand, within GFF636 at 678.845 kb on - strand, within GFF636 at 678.851 kb on - strand, within GFF636 at 678.851 kb on - strand, within GFF636 at 678.851 kb on - strand, within GFF636 at 678.851 kb on - strand, within GFF636 at 678.860 kb on - strand, within GFF636 at 678.902 kb on - strand, within GFF636 at 679.055 kb on - strand, within GFF636 at 679.138 kb on + strand, within GFF636 at 679.159 kb on + strand, within GFF636 at 679.252 kb on + strand, within GFF636 at 679.261 kb on + strand, within GFF636 at 679.261 kb on + strand, within GFF636 at 679.297 kb on + strand, within GFF636 at 679.298 kb on - strand, within GFF636 at 679.354 kb on + strand, within GFF636 at 679.373 kb on - strand, within GFF636 at 679.405 kb on + strand, within GFF636 at 679.580 kb on - strand, within GFF636 at 679.624 kb on + strand, within GFF636 at 679.669 kb on + strand, within GFF636 at 679.669 kb on + strand, within GFF636 at 679.717 kb on + strand, within GFF636 at 679.726 kb on + strand, within GFF636 at 679.738 kb on + strand, within GFF636 at 679.739 kb on - strand, within GFF636 at 679.739 kb on - strand, within GFF636 at 679.746 kb on - strand, within GFF636 at 679.853 kb on + strand, within GFF636 at 679.854 kb on - strand, within GFF636 at 679.856 kb on - strand, within GFF636 at 679.873 kb on + strand, within GFF636 at 679.902 kb on - strand, within GFF636 at 679.936 kb on + strand, within GFF636 at 680.062 kb on + strand, within GFF636 at 680.062 kb on + strand, within GFF636 at 680.063 kb on - strand, within GFF636 at 680.066 kb on + strand, within GFF636 at 680.066 kb on + strand, within GFF636 at 680.066 kb on + strand, within GFF636 at 680.067 kb on - strand, within GFF636 at 680.067 kb on - strand, within GFF636 at 680.204 kb on - strand, within GFF636 at 680.720 kb on + strand at 680.778 kb on + strand at 681.145 kb on + strand, within GFF637 at 681.146 kb on - strand, within GFF637
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 677,372 + GFF634 0.70 -1.5 677,813 + -0.0 677,814 - +1.4 677,814 - +0.4 677,964 + +1.8 677,964 + +0.5 677,964 + +0.7 677,964 + +0.1 678,060 + GFF635 0.20 -0.3 678,062 + GFF635 0.21 +0.4 678,062 + GFF635 0.21 -0.3 678,062 + GFF635 0.21 +0.1 678,063 - GFF635 0.21 +0.6 678,173 + GFF635 0.54 -0.6 678,173 + GFF635 0.54 -0.6 678,174 - GFF635 0.54 +0.8 678,174 - GFF635 0.54 +0.0 678,174 - GFF635 0.54 -1.6 678,182 + GFF635 0.57 +0.4 678,182 + GFF635 0.57 +0.1 678,182 + GFF635 0.57 +0.1 678,183 - GFF635 0.57 -0.8 678,245 + GFF635 0.75 +0.1 678,246 - GFF635 0.76 +0.0 678,472 + -0.5 678,551 - -1.2 678,793 + GFF636 0.19 -0.2 678,845 - GFF636 0.22 -0.1 678,851 - GFF636 0.22 -0.4 678,851 - GFF636 0.22 +0.1 678,851 - GFF636 0.22 -0.0 678,851 - GFF636 0.22 -0.2 678,860 - GFF636 0.22 +0.6 678,902 - GFF636 0.24 -1.2 679,055 - GFF636 0.31 +0.5 679,138 + GFF636 0.35 -0.9 679,159 + GFF636 0.36 +1.7 679,252 + GFF636 0.40 -0.9 679,261 + GFF636 0.40 -0.8 679,261 + GFF636 0.40 +0.8 679,297 + GFF636 0.42 +0.5 679,298 - GFF636 0.42 +0.8 679,354 + GFF636 0.45 +0.6 679,373 - GFF636 0.45 -0.4 679,405 + GFF636 0.47 +0.5 679,580 - GFF636 0.55 -0.2 679,624 + GFF636 0.57 +0.1 679,669 + GFF636 0.59 -0.8 679,669 + GFF636 0.59 +0.1 679,717 + GFF636 0.61 +0.2 679,726 + GFF636 0.61 -0.2 679,738 + GFF636 0.62 -0.2 679,739 - GFF636 0.62 -0.4 679,739 - GFF636 0.62 +1.0 679,746 - GFF636 0.62 -0.7 679,853 + GFF636 0.67 -0.1 679,854 - GFF636 0.67 +0.4 679,856 - GFF636 0.67 -0.7 679,873 + GFF636 0.68 -0.8 679,902 - GFF636 0.69 -1.1 679,936 + GFF636 0.71 +0.8 680,062 + GFF636 0.77 +1.1 680,062 + GFF636 0.77 -1.2 680,063 - GFF636 0.77 +1.7 680,066 + GFF636 0.77 -0.5 680,066 + GFF636 0.77 +0.9 680,066 + GFF636 0.77 +0.2 680,067 - GFF636 0.77 -1.0 680,067 - GFF636 0.77 +1.6 680,204 - GFF636 0.83 -0.7 680,720 + +0.1 680,778 + -0.3 681,145 + GFF637 0.28 +0.5 681,146 - GFF637 0.28 +0.6
Or see this region's nucleotide sequence