Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF593 and GFF594 are separated by 112 nucleotides GFF594 and GFF595 are separated by 24 nucleotides GFF595 and GFF596 are separated by 78 nucleotides GFF596 and GFF597 overlap by 25 nucleotides
GFF593 - Polar-differentiation response regulator DivK, at 633,778 to 634,146
GFF593
GFF594 - hypothetical protein, at 634,259 to 634,585
GFF594
GFF595 - DNA polymerase IV, at 634,610 to 635,911
GFF595
GFF596 - hypothetical protein, at 635,990 to 636,430
GFF596
GFF597 - hypothetical protein, at 636,406 to 637,251
GFF597
Position (kb) 634
635
636 Strain fitness (log2 ratio) -1
0
1 at 633.647 kb on - strand at 633.731 kb on - strand at 633.790 kb on - strand at 634.232 kb on + strand at 634.232 kb on + strand at 634.583 kb on + strand at 634.583 kb on + strand at 634.766 kb on + strand, within GFF595 at 634.859 kb on + strand, within GFF595 at 634.860 kb on - strand, within GFF595 at 635.369 kb on + strand, within GFF595 at 635.516 kb on + strand, within GFF595 at 636.428 kb on + strand at 636.482 kb on + strand at 636.482 kb on + strand at 636.723 kb on + strand, within GFF597 at 636.724 kb on - strand, within GFF597
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 633,647 - +0.5 633,731 - -0.4 633,790 - -0.2 634,232 + +0.8 634,232 + +0.1 634,583 + -0.1 634,583 + -0.2 634,766 + GFF595 0.12 -0.8 634,859 + GFF595 0.19 -1.0 634,860 - GFF595 0.19 -0.5 635,369 + GFF595 0.58 +1.1 635,516 + GFF595 0.70 -0.6 636,428 + -0.5 636,482 + -0.6 636,482 + +0.1 636,723 + GFF597 0.37 +0.6 636,724 - GFF597 0.38 +0.6
Or see this region's nucleotide sequence