Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF488 and GFF489 are separated by 11 nucleotides GFF489 and GFF490 are separated by 845 nucleotides
GFF488 - Vitamin B12 import ATP-binding protein BtuD, at 516,844 to 518,184
GFF488
GFF489 - hypothetical protein, at 518,196 to 519,932
GFF489
GFF490 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 520,778 to 521,482
GFF490
Position (kb) 518
519
520 Strain fitness (log2 ratio) -2
-1
0
1 at 517.259 kb on + strand, within GFF488 at 517.259 kb on + strand, within GFF488 at 517.259 kb on + strand, within GFF488 at 517.260 kb on - strand, within GFF488 at 517.260 kb on - strand, within GFF488 at 517.403 kb on + strand, within GFF488 at 517.403 kb on + strand, within GFF488 at 517.404 kb on - strand, within GFF488 at 517.404 kb on - strand, within GFF488 at 517.404 kb on - strand, within GFF488 at 517.404 kb on - strand, within GFF488 at 518.230 kb on + strand at 518.230 kb on + strand at 518.230 kb on + strand at 518.231 kb on - strand at 518.338 kb on + strand at 518.338 kb on + strand at 518.338 kb on + strand at 518.338 kb on + strand at 518.339 kb on - strand at 518.446 kb on + strand, within GFF489 at 518.446 kb on + strand, within GFF489 at 518.447 kb on - strand, within GFF489 at 518.449 kb on + strand, within GFF489 at 518.449 kb on + strand, within GFF489 at 518.449 kb on + strand, within GFF489 at 518.450 kb on - strand, within GFF489 at 518.476 kb on + strand, within GFF489 at 518.575 kb on + strand, within GFF489 at 518.575 kb on + strand, within GFF489 at 518.575 kb on + strand, within GFF489 at 518.575 kb on + strand, within GFF489 at 518.575 kb on + strand, within GFF489 at 518.575 kb on + strand, within GFF489 at 518.576 kb on - strand, within GFF489 at 518.576 kb on - strand, within GFF489 at 518.890 kb on + strand, within GFF489 at 518.890 kb on + strand, within GFF489 at 518.890 kb on + strand, within GFF489 at 518.891 kb on - strand, within GFF489 at 518.891 kb on - strand, within GFF489 at 519.166 kb on + strand, within GFF489 at 519.167 kb on - strand, within GFF489 at 519.167 kb on - strand, within GFF489 at 519.247 kb on + strand, within GFF489 at 519.247 kb on + strand, within GFF489 at 519.247 kb on + strand, within GFF489 at 519.247 kb on + strand, within GFF489 at 519.248 kb on - strand, within GFF489 at 519.425 kb on + strand, within GFF489 at 519.467 kb on - strand, within GFF489 at 519.483 kb on - strand, within GFF489 at 519.483 kb on - strand, within GFF489 at 519.740 kb on - strand, within GFF489 at 519.740 kb on - strand, within GFF489 at 519.740 kb on - strand, within GFF489 at 519.936 kb on + strand at 519.936 kb on + strand at 519.937 kb on - strand at 520.128 kb on + strand at 520.128 kb on + strand at 520.128 kb on + strand at 520.128 kb on + strand at 520.128 kb on + strand at 520.129 kb on - strand at 520.129 kb on - strand at 520.129 kb on - strand at 520.129 kb on - strand at 520.195 kb on - strand at 520.208 kb on + strand at 520.209 kb on - strand at 520.309 kb on + strand at 520.309 kb on + strand at 520.310 kb on - strand at 520.326 kb on + strand at 520.381 kb on + strand at 520.382 kb on - strand at 520.382 kb on - strand at 520.534 kb on + strand at 520.535 kb on - strand at 520.535 kb on - strand at 520.613 kb on + strand at 520.614 kb on - strand at 520.614 kb on - strand at 520.780 kb on - strand at 520.788 kb on + strand at 520.788 kb on + strand at 520.789 kb on - strand at 520.883 kb on - strand, within GFF490
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 517,259 + GFF488 0.31 +1.5 517,259 + GFF488 0.31 +0.2 517,259 + GFF488 0.31 -0.4 517,260 - GFF488 0.31 -0.1 517,260 - GFF488 0.31 -0.8 517,403 + GFF488 0.42 +0.0 517,403 + GFF488 0.42 -0.1 517,404 - GFF488 0.42 -0.8 517,404 - GFF488 0.42 +0.1 517,404 - GFF488 0.42 -0.3 517,404 - GFF488 0.42 +0.3 518,230 + +0.1 518,230 + -0.9 518,230 + -0.0 518,231 - +0.9 518,338 + +1.2 518,338 + +0.2 518,338 + -1.5 518,338 + -1.0 518,339 - -1.4 518,446 + GFF489 0.14 +0.2 518,446 + GFF489 0.14 -0.2 518,447 - GFF489 0.14 -0.7 518,449 + GFF489 0.15 +0.2 518,449 + GFF489 0.15 +0.8 518,449 + GFF489 0.15 +0.5 518,450 - GFF489 0.15 -0.0 518,476 + GFF489 0.16 +0.1 518,575 + GFF489 0.22 -0.6 518,575 + GFF489 0.22 -0.6 518,575 + GFF489 0.22 -0.0 518,575 + GFF489 0.22 -1.4 518,575 + GFF489 0.22 -0.6 518,575 + GFF489 0.22 -0.6 518,576 - GFF489 0.22 +0.5 518,576 - GFF489 0.22 +1.3 518,890 + GFF489 0.40 +0.3 518,890 + GFF489 0.40 -0.6 518,890 + GFF489 0.40 +0.5 518,891 - GFF489 0.40 -0.1 518,891 - GFF489 0.40 -1.4 519,166 + GFF489 0.56 -0.7 519,167 - GFF489 0.56 -0.6 519,167 - GFF489 0.56 +0.4 519,247 + GFF489 0.61 +0.1 519,247 + GFF489 0.61 -0.6 519,247 + GFF489 0.61 +0.5 519,247 + GFF489 0.61 +1.3 519,248 - GFF489 0.61 +0.0 519,425 + GFF489 0.71 -0.6 519,467 - GFF489 0.73 -0.1 519,483 - GFF489 0.74 -0.3 519,483 - GFF489 0.74 +0.5 519,740 - GFF489 0.89 +0.1 519,740 - GFF489 0.89 -0.9 519,740 - GFF489 0.89 +0.3 519,936 + +0.8 519,936 + -0.4 519,937 - +0.9 520,128 + +1.0 520,128 + -0.7 520,128 + -0.5 520,128 + +0.2 520,128 + -1.2 520,129 - -1.4 520,129 - +1.0 520,129 - -0.2 520,129 - +0.4 520,195 - -0.2 520,208 + +0.5 520,209 - -0.2 520,309 + -0.6 520,309 + -2.3 520,310 - -0.5 520,326 + -1.2 520,381 + +0.3 520,382 - -0.8 520,382 - -0.4 520,534 + -0.5 520,535 - -0.8 520,535 - -0.2 520,613 + +0.2 520,614 - -1.0 520,614 - -0.5 520,780 - -0.2 520,788 + +0.2 520,788 + -0.7 520,789 - +0.2 520,883 - GFF490 0.15 -0.1
Or see this region's nucleotide sequence