Strain Fitness in Xanthobacter sp. DMC5 around GFF4873

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4869 and GFF4870 are separated by 5 nucleotidesGFF4870 and GFF4871 are separated by 55 nucleotidesGFF4871 and GFF4872 are separated by 88 nucleotidesGFF4872 and GFF4873 overlap by 1 nucleotidesGFF4873 and GFF4874 are separated by 52 nucleotidesGFF4874 and GFF4875 are separated by 217 nucleotides GFF4869 - hypothetical protein, at 22,017 to 22,334 GFF4869 GFF4870 - hypothetical protein, at 22,340 to 22,582 GFF4870 GFF4871 - hypothetical protein, at 22,638 to 22,967 GFF4871 GFF4872 - hypothetical protein, at 23,056 to 23,319 GFF4872 GFF4873 - GDP-perosamine synthase, at 23,319 to 24,518 GFF4873 GFF4874 - hypothetical protein, at 24,571 to 24,885 GFF4874 GFF4875 - hypothetical protein, at 25,103 to 25,327 GFF4875 Position (kb) 23 24 25Strain fitness (log2 ratio) -1 0 1 2at 22.367 kb on + strand, within GFF4870at 22.367 kb on + strand, within GFF4870at 22.367 kb on + strand, within GFF4870at 22.368 kb on - strand, within GFF4870at 22.406 kb on + strand, within GFF4870at 22.407 kb on - strand, within GFF4870at 22.407 kb on - strand, within GFF4870at 22.421 kb on + strand, within GFF4870at 22.421 kb on + strand, within GFF4870at 22.422 kb on - strand, within GFF4870at 22.501 kb on + strand, within GFF4870at 22.501 kb on + strand, within GFF4870at 22.517 kb on + strand, within GFF4870at 22.517 kb on + strand, within GFF4870at 22.517 kb on + strand, within GFF4870at 22.517 kb on + strand, within GFF4870at 22.518 kb on - strand, within GFF4870at 22.518 kb on - strand, within GFF4870at 22.518 kb on - strand, within GFF4870at 22.518 kb on - strand, within GFF4870at 22.518 kb on - strand, within GFF4870at 22.518 kb on - strand, within GFF4870at 22.518 kb on - strand, within GFF4870at 22.526 kb on + strand, within GFF4870at 22.631 kb on + strandat 22.631 kb on + strandat 22.632 kb on - strandat 22.711 kb on - strand, within GFF4871at 22.716 kb on + strand, within GFF4871at 22.717 kb on - strand, within GFF4871at 22.787 kb on - strand, within GFF4871at 22.898 kb on + strand, within GFF4871at 22.899 kb on - strand, within GFF4871at 23.049 kb on + strandat 23.049 kb on + strandat 23.049 kb on + strandat 23.049 kb on + strandat 23.050 kb on - strandat 23.050 kb on - strandat 23.055 kb on + strandat 23.055 kb on + strandat 23.056 kb on - strandat 23.056 kb on - strandat 23.213 kb on - strand, within GFF4872at 23.221 kb on + strand, within GFF4872at 23.384 kb on + strandat 23.384 kb on + strandat 23.384 kb on + strandat 23.385 kb on - strandat 23.385 kb on - strandat 23.505 kb on + strand, within GFF4873at 23.506 kb on - strand, within GFF4873at 23.506 kb on - strand, within GFF4873at 23.506 kb on - strand, within GFF4873at 23.506 kb on - strand, within GFF4873at 23.520 kb on + strand, within GFF4873at 23.520 kb on + strand, within GFF4873at 23.520 kb on + strand, within GFF4873at 23.520 kb on + strand, within GFF4873at 23.521 kb on - strand, within GFF4873at 23.521 kb on - strand, within GFF4873at 23.574 kb on + strand, within GFF4873at 23.576 kb on - strand, within GFF4873at 23.613 kb on + strand, within GFF4873at 23.613 kb on + strand, within GFF4873at 23.613 kb on + strand, within GFF4873at 23.674 kb on - strand, within GFF4873at 23.683 kb on - strand, within GFF4873at 23.683 kb on - strand, within GFF4873at 23.860 kb on - strand, within GFF4873at 23.860 kb on - strand, within GFF4873at 23.929 kb on + strand, within GFF4873at 23.929 kb on + strand, within GFF4873at 23.930 kb on - strand, within GFF4873at 23.930 kb on - strand, within GFF4873at 23.930 kb on - strand, within GFF4873at 23.930 kb on - strand, within GFF4873at 23.963 kb on + strand, within GFF4873at 24.048 kb on + strand, within GFF4873at 24.049 kb on - strand, within GFF4873at 24.148 kb on - strand, within GFF4873at 24.148 kb on - strand, within GFF4873at 24.156 kb on + strand, within GFF4873at 24.156 kb on + strand, within GFF4873at 24.156 kb on + strand, within GFF4873at 24.156 kb on + strand, within GFF4873at 24.156 kb on + strand, within GFF4873at 24.157 kb on - strand, within GFF4873at 24.157 kb on - strand, within GFF4873at 24.157 kb on - strand, within GFF4873at 24.228 kb on + strand, within GFF4873at 24.228 kb on + strand, within GFF4873at 24.228 kb on + strand, within GFF4873at 24.229 kb on - strand, within GFF4873at 24.318 kb on + strand, within GFF4873at 24.318 kb on + strand, within GFF4873at 24.319 kb on - strand, within GFF4873at 24.319 kb on - strand, within GFF4873at 24.348 kb on + strand, within GFF4873at 24.348 kb on + strand, within GFF4873at 24.349 kb on - strand, within GFF4873at 24.364 kb on - strand, within GFF4873at 24.493 kb on + strandat 24.494 kb on - strandat 24.514 kb on - strandat 24.514 kb on - strandat 24.633 kb on + strand, within GFF4874at 24.742 kb on - strand, within GFF4874at 25.017 kb on + strandat 25.217 kb on + strand, within GFF4875at 25.218 kb on - strand, within GFF4875at 25.235 kb on + strand, within GFF4875at 25.235 kb on + strand, within GFF4875at 25.235 kb on + strand, within GFF4875at 25.235 kb on + strand, within GFF4875at 25.236 kb on - strand, within GFF4875at 25.236 kb on - strand, within GFF4875at 25.236 kb on - strand, within GFF4875at 25.236 kb on - strand, within GFF4875at 25.348 kb on - strandat 25.401 kb on + strandat 25.401 kb on + strandat 25.402 kb on - strandat 25.402 kb on - strandat 25.475 kb on + strandat 25.475 kb on + strandat 25.476 kb on - strandat 25.476 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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22,367 + GFF4870 0.11 -0.3
22,367 + GFF4870 0.11 +1.0
22,367 + GFF4870 0.11 -0.8
22,368 - GFF4870 0.12 +0.3
22,406 + GFF4870 0.27 +0.5
22,407 - GFF4870 0.28 +0.8
22,407 - GFF4870 0.28 +0.3
22,421 + GFF4870 0.33 +0.3
22,421 + GFF4870 0.33 +0.4
22,422 - GFF4870 0.34 +0.6
22,501 + GFF4870 0.66 +0.4
22,501 + GFF4870 0.66 +0.3
22,517 + GFF4870 0.73 +0.1
22,517 + GFF4870 0.73 +0.7
22,517 + GFF4870 0.73 -0.1
22,517 + GFF4870 0.73 -0.6
22,518 - GFF4870 0.73 +0.5
22,518 - GFF4870 0.73 +0.2
22,518 - GFF4870 0.73 +0.1
22,518 - GFF4870 0.73 +0.0
22,518 - GFF4870 0.73 -0.7
22,518 - GFF4870 0.73 +0.0
22,518 - GFF4870 0.73 +0.2
22,526 + GFF4870 0.77 -1.1
22,631 + +0.0
22,631 + +0.5
22,632 - +0.1
22,711 - GFF4871 0.22 +0.1
22,716 + GFF4871 0.24 -0.3
22,717 - GFF4871 0.24 -0.5
22,787 - GFF4871 0.45 +0.5
22,898 + GFF4871 0.79 +0.4
22,899 - GFF4871 0.79 -0.3
23,049 + +1.1
23,049 + -0.3
23,049 + +0.5
23,049 + +2.2
23,050 - -0.8
23,050 - +0.6
23,055 + -1.0
23,055 + -0.8
23,056 - +0.0
23,056 - +0.0
23,213 - GFF4872 0.59 -0.1
23,221 + GFF4872 0.62 -0.9
23,384 + +0.6
23,384 + +0.8
23,384 + -0.3
23,385 - -0.2
23,385 - -0.8
23,505 + GFF4873 0.15 +0.2
23,506 - GFF4873 0.16 -0.7
23,506 - GFF4873 0.16 +0.9
23,506 - GFF4873 0.16 -0.1
23,506 - GFF4873 0.16 -0.8
23,520 + GFF4873 0.17 +0.6
23,520 + GFF4873 0.17 -0.2
23,520 + GFF4873 0.17 +0.8
23,520 + GFF4873 0.17 -0.5
23,521 - GFF4873 0.17 +1.2
23,521 - GFF4873 0.17 +0.6
23,574 + GFF4873 0.21 +0.5
23,576 - GFF4873 0.21 -0.6
23,613 + GFF4873 0.24 +0.7
23,613 + GFF4873 0.24 -0.7
23,613 + GFF4873 0.24 +0.2
23,674 - GFF4873 0.30 +0.4
23,683 - GFF4873 0.30 +0.4
23,683 - GFF4873 0.30 -0.0
23,860 - GFF4873 0.45 +0.2
23,860 - GFF4873 0.45 -0.5
23,929 + GFF4873 0.51 +0.4
23,929 + GFF4873 0.51 +0.2
23,930 - GFF4873 0.51 +0.2
23,930 - GFF4873 0.51 -0.7
23,930 - GFF4873 0.51 +0.3
23,930 - GFF4873 0.51 +1.0
23,963 + GFF4873 0.54 -0.8
24,048 + GFF4873 0.61 +0.3
24,049 - GFF4873 0.61 -0.0
24,148 - GFF4873 0.69 +0.5
24,148 - GFF4873 0.69 +0.7
24,156 + GFF4873 0.70 -0.4
24,156 + GFF4873 0.70 +0.7
24,156 + GFF4873 0.70 +0.6
24,156 + GFF4873 0.70 +0.7
24,156 + GFF4873 0.70 +0.7
24,157 - GFF4873 0.70 +0.4
24,157 - GFF4873 0.70 +1.1
24,157 - GFF4873 0.70 +0.8
24,228 + GFF4873 0.76 -0.1
24,228 + GFF4873 0.76 -0.4
24,228 + GFF4873 0.76 -0.0
24,229 - GFF4873 0.76 +0.7
24,318 + GFF4873 0.83 -0.4
24,318 + GFF4873 0.83 -0.1
24,319 - GFF4873 0.83 +0.5
24,319 - GFF4873 0.83 -1.5
24,348 + GFF4873 0.86 +0.5
24,348 + GFF4873 0.86 -0.3
24,349 - GFF4873 0.86 -0.3
24,364 - GFF4873 0.87 +0.4
24,493 + +0.3
24,494 - +0.0
24,514 - +0.0
24,514 - +0.5
24,633 + GFF4874 0.20 -0.3
24,742 - GFF4874 0.54 +1.4
25,017 + +2.0
25,217 + GFF4875 0.51 -0.2
25,218 - GFF4875 0.51 -1.7
25,235 + GFF4875 0.59 +1.8
25,235 + GFF4875 0.59 +1.6
25,235 + GFF4875 0.59 +0.2
25,235 + GFF4875 0.59 +0.4
25,236 - GFF4875 0.59 +0.1
25,236 - GFF4875 0.59 +1.4
25,236 - GFF4875 0.59 +0.1
25,236 - GFF4875 0.59 +0.6
25,348 - -0.1
25,401 + +0.9
25,401 + +0.1
25,402 - -0.5
25,402 - +0.4
25,475 + +1.4
25,475 + +1.2
25,476 - +0.4
25,476 - -0.7

Or see this region's nucleotide sequence