Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF485 and GFF486 overlap by 8 nucleotides GFF486 and GFF487 are separated by 20 nucleotides GFF487 and GFF488 are separated by 162 nucleotides
GFF485 - hypothetical protein, at 514,558 to 515,784
GFF485
GFF486 - Lipoprotein-releasing system ATP-binding protein LolD, at 515,777 to 516,475
GFF486
GFF487 - hypothetical protein, at 516,496 to 516,681
GFF487
GFF488 - Vitamin B12 import ATP-binding protein BtuD, at 516,844 to 518,184
GFF488
Position (kb) 516
517 Strain fitness (log2 ratio) -1
0
1
2 at 515.816 kb on + strand at 515.816 kb on + strand at 515.816 kb on + strand at 515.817 kb on - strand at 515.817 kb on - strand at 515.817 kb on - strand at 515.939 kb on - strand, within GFF486 at 516.060 kb on - strand, within GFF486 at 516.065 kb on + strand, within GFF486 at 516.065 kb on + strand, within GFF486 at 516.066 kb on - strand, within GFF486 at 516.394 kb on + strand, within GFF486 at 516.394 kb on + strand, within GFF486 at 516.394 kb on + strand, within GFF486 at 516.395 kb on - strand, within GFF486 at 516.395 kb on - strand, within GFF486 at 516.395 kb on - strand, within GFF486 at 516.395 kb on - strand, within GFF486 at 516.651 kb on + strand, within GFF487 at 516.652 kb on - strand, within GFF487 at 516.652 kb on - strand, within GFF487 at 516.720 kb on + strand at 516.727 kb on + strand at 516.789 kb on - strand at 516.807 kb on + strand at 516.877 kb on - strand at 516.877 kb on - strand at 516.887 kb on + strand at 517.055 kb on + strand, within GFF488 at 517.055 kb on + strand, within GFF488 at 517.055 kb on + strand, within GFF488 at 517.055 kb on + strand, within GFF488 at 517.055 kb on + strand, within GFF488 at 517.055 kb on + strand, within GFF488 at 517.056 kb on - strand, within GFF488 at 517.096 kb on + strand, within GFF488 at 517.097 kb on - strand, within GFF488 at 517.259 kb on + strand, within GFF488 at 517.259 kb on + strand, within GFF488 at 517.259 kb on + strand, within GFF488 at 517.260 kb on - strand, within GFF488 at 517.260 kb on - strand, within GFF488 at 517.403 kb on + strand, within GFF488 at 517.403 kb on + strand, within GFF488 at 517.404 kb on - strand, within GFF488 at 517.404 kb on - strand, within GFF488 at 517.404 kb on - strand, within GFF488 at 517.404 kb on - strand, within GFF488
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 515,816 + -1.5 515,816 + +0.1 515,816 + +1.4 515,817 - -1.1 515,817 - +0.2 515,817 - -0.3 515,939 - GFF486 0.23 +1.2 516,060 - GFF486 0.40 -0.2 516,065 + GFF486 0.41 +0.0 516,065 + GFF486 0.41 +0.9 516,066 - GFF486 0.41 -0.9 516,394 + GFF486 0.88 -0.4 516,394 + GFF486 0.88 -0.8 516,394 + GFF486 0.88 -0.2 516,395 - GFF486 0.88 -0.3 516,395 - GFF486 0.88 +0.6 516,395 - GFF486 0.88 -0.4 516,395 - GFF486 0.88 -1.0 516,651 + GFF487 0.83 -0.5 516,652 - GFF487 0.84 +0.1 516,652 - GFF487 0.84 -0.1 516,720 + +0.1 516,727 + -1.1 516,789 - +2.1 516,807 + -0.0 516,877 - +0.2 516,877 - -0.2 516,887 + +0.0 517,055 + GFF488 0.16 -1.5 517,055 + GFF488 0.16 -0.4 517,055 + GFF488 0.16 -0.6 517,055 + GFF488 0.16 -0.3 517,055 + GFF488 0.16 +1.0 517,055 + GFF488 0.16 +0.8 517,056 - GFF488 0.16 -0.9 517,096 + GFF488 0.19 +0.8 517,097 - GFF488 0.19 -0.0 517,259 + GFF488 0.31 +1.5 517,259 + GFF488 0.31 +0.2 517,259 + GFF488 0.31 -0.4 517,260 - GFF488 0.31 -0.1 517,260 - GFF488 0.31 -0.8 517,403 + GFF488 0.42 +0.0 517,403 + GFF488 0.42 -0.1 517,404 - GFF488 0.42 -0.8 517,404 - GFF488 0.42 +0.1 517,404 - GFF488 0.42 -0.3 517,404 - GFF488 0.42 +0.3
Or see this region's nucleotide sequence