Strain Fitness in Xanthobacter sp. DMC5 around GFF483

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF481 and GFF482 are separated by 75 nucleotidesGFF482 and GFF483 are separated by 238 nucleotidesGFF483 and GFF484 are separated by 531 nucleotides GFF481 - Phyllosphere-induced regulator PhyR, at 507,712 to 508,074 GFF481 GFF482 - hypothetical protein, at 508,150 to 508,317 GFF482 GFF483 - Sensor histidine kinase RcsC, at 508,556 to 512,827 GFF483 GFF484 - Macrolide export protein MacA, at 513,359 to 514,561 GFF484 Position (kb) 508 509 510 511 512 513Strain fitness (log2 ratio) -2 -1 0 1 2at 507.622 kb on + strandat 507.622 kb on + strandat 507.623 kb on - strandat 507.691 kb on + strandat 507.692 kb on - strandat 507.692 kb on - strandat 507.877 kb on + strand, within GFF481at 507.878 kb on - strand, within GFF481at 507.878 kb on - strand, within GFF481at 507.981 kb on + strand, within GFF481at 507.981 kb on + strand, within GFF481at 507.982 kb on - strand, within GFF481at 508.262 kb on + strand, within GFF482at 508.288 kb on - strand, within GFF482at 508.303 kb on + strandat 508.458 kb on + strandat 508.458 kb on + strandat 508.458 kb on + strandat 508.459 kb on - strandat 508.459 kb on - strandat 508.558 kb on - strandat 508.558 kb on - strandat 508.558 kb on - strandat 508.797 kb on - strandat 508.797 kb on - strandat 508.939 kb on + strandat 508.940 kb on - strandat 509.016 kb on + strand, within GFF483at 509.017 kb on - strand, within GFF483at 509.017 kb on - strand, within GFF483at 509.017 kb on - strand, within GFF483at 509.017 kb on - strand, within GFF483at 509.017 kb on - strand, within GFF483at 509.085 kb on + strand, within GFF483at 509.085 kb on + strand, within GFF483at 509.085 kb on + strand, within GFF483at 509.085 kb on + strand, within GFF483at 509.128 kb on + strand, within GFF483at 509.440 kb on - strand, within GFF483at 509.617 kb on + strand, within GFF483at 509.617 kb on + strand, within GFF483at 509.617 kb on + strand, within GFF483at 509.829 kb on + strand, within GFF483at 509.829 kb on + strand, within GFF483at 509.829 kb on + strand, within GFF483at 509.950 kb on - strand, within GFF483at 510.066 kb on + strand, within GFF483at 510.067 kb on - strand, within GFF483at 510.067 kb on - strand, within GFF483at 510.474 kb on + strand, within GFF483at 510.699 kb on + strand, within GFF483at 510.700 kb on - strand, within GFF483at 510.975 kb on - strand, within GFF483at 510.975 kb on - strand, within GFF483at 511.252 kb on - strand, within GFF483at 511.272 kb on + strand, within GFF483at 511.272 kb on + strand, within GFF483at 511.275 kb on + strand, within GFF483at 511.346 kb on + strand, within GFF483at 511.347 kb on - strand, within GFF483at 511.407 kb on + strand, within GFF483at 511.407 kb on + strand, within GFF483at 511.407 kb on + strand, within GFF483at 511.407 kb on + strand, within GFF483at 511.407 kb on + strand, within GFF483at 511.408 kb on - strand, within GFF483at 511.408 kb on - strand, within GFF483at 511.408 kb on - strand, within GFF483at 511.408 kb on - strand, within GFF483at 511.408 kb on - strand, within GFF483at 511.408 kb on - strand, within GFF483at 511.473 kb on + strand, within GFF483at 511.617 kb on + strand, within GFF483at 511.800 kb on + strand, within GFF483at 512.196 kb on + strand, within GFF483at 512.196 kb on + strand, within GFF483at 512.196 kb on + strand, within GFF483at 512.197 kb on - strand, within GFF483at 512.197 kb on - strand, within GFF483at 512.197 kb on - strand, within GFF483at 512.218 kb on + strand, within GFF483at 512.219 kb on - strand, within GFF483at 512.219 kb on - strand, within GFF483at 512.219 kb on - strand, within GFF483at 512.377 kb on - strand, within GFF483at 512.496 kb on + strandat 512.497 kb on - strandat 512.497 kb on - strandat 512.497 kb on - strandat 512.599 kb on - strandat 512.599 kb on - strandat 512.619 kb on + strandat 512.619 kb on + strandat 512.620 kb on - strandat 512.620 kb on - strandat 513.038 kb on - strandat 513.109 kb on + strandat 513.110 kb on - strandat 513.113 kb on + strandat 513.113 kb on + strandat 513.113 kb on + strandat 513.114 kb on - strandat 513.114 kb on - strandat 513.141 kb on + strandat 513.141 kb on + strandat 513.397 kb on - strandat 513.776 kb on + strand, within GFF484at 513.777 kb on - strand, within GFF484at 513.777 kb on - strand, within GFF484at 513.777 kb on - strand, within GFF484at 513.777 kb on - strand, within GFF484

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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507,622 + -0.2
507,622 + -0.7
507,623 - -0.1
507,691 + -0.4
507,692 - -0.3
507,692 - +0.6
507,877 + GFF481 0.45 -0.1
507,878 - GFF481 0.46 +0.5
507,878 - GFF481 0.46 +0.0
507,981 + GFF481 0.74 +0.0
507,981 + GFF481 0.74 -0.7
507,982 - GFF481 0.74 -0.7
508,262 + GFF482 0.67 -0.1
508,288 - GFF482 0.82 -0.9
508,303 + +0.5
508,458 + -1.4
508,458 + +0.2
508,458 + +1.5
508,459 - +0.4
508,459 - +0.5
508,558 - +0.4
508,558 - -0.2
508,558 - -0.0
508,797 - -1.0
508,797 - -0.9
508,939 + +0.2
508,940 - -0.8
509,016 + GFF483 0.11 -0.6
509,017 - GFF483 0.11 +0.4
509,017 - GFF483 0.11 +0.7
509,017 - GFF483 0.11 -0.0
509,017 - GFF483 0.11 -0.2
509,017 - GFF483 0.11 +0.6
509,085 + GFF483 0.12 -0.5
509,085 + GFF483 0.12 -1.0
509,085 + GFF483 0.12 -1.1
509,085 + GFF483 0.12 -0.9
509,128 + GFF483 0.13 -0.9
509,440 - GFF483 0.21 -0.6
509,617 + GFF483 0.25 -0.0
509,617 + GFF483 0.25 -1.4
509,617 + GFF483 0.25 +0.3
509,829 + GFF483 0.30 -0.0
509,829 + GFF483 0.30 -0.2
509,829 + GFF483 0.30 +0.4
509,950 - GFF483 0.33 -0.7
510,066 + GFF483 0.35 -0.1
510,067 - GFF483 0.35 -0.2
510,067 - GFF483 0.35 -0.5
510,474 + GFF483 0.45 -0.8
510,699 + GFF483 0.50 -0.4
510,700 - GFF483 0.50 -0.6
510,975 - GFF483 0.57 -2.0
510,975 - GFF483 0.57 -0.6
511,252 - GFF483 0.63 +0.4
511,272 + GFF483 0.64 -0.5
511,272 + GFF483 0.64 -0.7
511,275 + GFF483 0.64 +1.3
511,346 + GFF483 0.65 +0.0
511,347 - GFF483 0.65 +0.3
511,407 + GFF483 0.67 +0.3
511,407 + GFF483 0.67 +0.2
511,407 + GFF483 0.67 +1.2
511,407 + GFF483 0.67 -0.3
511,407 + GFF483 0.67 +0.9
511,408 - GFF483 0.67 -0.6
511,408 - GFF483 0.67 -0.7
511,408 - GFF483 0.67 -1.3
511,408 - GFF483 0.67 -0.1
511,408 - GFF483 0.67 +0.4
511,408 - GFF483 0.67 +0.1
511,473 + GFF483 0.68 +0.2
511,617 + GFF483 0.72 +0.4
511,800 + GFF483 0.76 -1.0
512,196 + GFF483 0.85 +1.2
512,196 + GFF483 0.85 -0.4
512,196 + GFF483 0.85 -1.2
512,197 - GFF483 0.85 +0.2
512,197 - GFF483 0.85 -0.6
512,197 - GFF483 0.85 -0.6
512,218 + GFF483 0.86 -0.3
512,219 - GFF483 0.86 +0.4
512,219 - GFF483 0.86 -0.5
512,219 - GFF483 0.86 +0.1
512,377 - GFF483 0.89 -0.1
512,496 + -0.2
512,497 - +0.1
512,497 - -1.4
512,497 - -0.4
512,599 - +0.5
512,599 - -1.1
512,619 + +0.9
512,619 + -0.6
512,620 - +2.1
512,620 - +0.2
513,038 - +0.7
513,109 + +0.3
513,110 - -0.8
513,113 + -0.2
513,113 + -1.4
513,113 + -0.6
513,114 - -0.8
513,114 - +1.0
513,141 + -1.7
513,141 + +0.5
513,397 - -0.0
513,776 + GFF484 0.35 -0.1
513,777 - GFF484 0.35 +0.2
513,777 - GFF484 0.35 +0.2
513,777 - GFF484 0.35 -0.6
513,777 - GFF484 0.35 -0.1

Or see this region's nucleotide sequence