Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4764 and GFF4765 are separated by 197 nucleotides GFF4765 and GFF4766 are separated by 447 nucleotides GFF4766 and GFF4767 are separated by 85 nucleotides
GFF4764 - hypothetical protein, at 1,324 to 2,331
GFF4764
GFF4765 - hypothetical protein, at 2,529 to 2,846
GFF4765
GFF4766 - 1,4-dihydroxy-2-naphthoyl-CoA synthase, at 3,294 to 4,079
GFF4766
GFF4767 - Long-chain-fatty-acid--CoA ligase, at 4,165 to 5,817
GFF4767
Position (kb) 3
4
5 Strain fitness (log2 ratio) -1
0
1 at 2.565 kb on + strand, within GFF4765 at 2.565 kb on + strand, within GFF4765 at 2.565 kb on + strand, within GFF4765 at 2.566 kb on - strand, within GFF4765 at 2.566 kb on - strand, within GFF4765 at 2.566 kb on - strand, within GFF4765 at 2.566 kb on - strand, within GFF4765 at 2.566 kb on - strand, within GFF4765 at 2.567 kb on + strand, within GFF4765 at 2.567 kb on + strand, within GFF4765 at 2.567 kb on + strand, within GFF4765 at 2.568 kb on - strand, within GFF4765 at 2.568 kb on - strand, within GFF4765 at 2.742 kb on + strand, within GFF4765 at 2.743 kb on - strand, within GFF4765 at 2.982 kb on + strand at 2.982 kb on + strand at 3.373 kb on + strand, within GFF4766 at 3.374 kb on - strand, within GFF4766 at 3.577 kb on + strand, within GFF4766 at 3.577 kb on + strand, within GFF4766 at 3.578 kb on - strand, within GFF4766 at 3.592 kb on + strand, within GFF4766 at 3.593 kb on - strand, within GFF4766 at 3.593 kb on - strand, within GFF4766 at 3.593 kb on - strand, within GFF4766 at 3.854 kb on - strand, within GFF4766 at 4.003 kb on + strand at 4.003 kb on + strand at 4.003 kb on + strand at 4.003 kb on + strand at 4.003 kb on + strand at 4.004 kb on - strand at 4.004 kb on - strand at 4.004 kb on - strand at 4.054 kb on + strand at 4.054 kb on + strand at 4.283 kb on + strand at 4.405 kb on + strand, within GFF4767 at 4.406 kb on - strand, within GFF4767 at 4.406 kb on - strand, within GFF4767 at 4.440 kb on - strand, within GFF4767 at 4.440 kb on - strand, within GFF4767 at 4.440 kb on - strand, within GFF4767 at 4.440 kb on - strand, within GFF4767 at 4.440 kb on - strand, within GFF4767 at 4.454 kb on - strand, within GFF4767 at 4.523 kb on + strand, within GFF4767 at 4.523 kb on + strand, within GFF4767 at 4.524 kb on - strand, within GFF4767 at 4.557 kb on + strand, within GFF4767 at 4.557 kb on + strand, within GFF4767 at 4.557 kb on + strand, within GFF4767 at 4.558 kb on - strand, within GFF4767 at 4.558 kb on - strand, within GFF4767 at 4.558 kb on - strand, within GFF4767 at 4.562 kb on + strand, within GFF4767 at 4.562 kb on + strand, within GFF4767 at 4.611 kb on - strand, within GFF4767 at 4.836 kb on - strand, within GFF4767 at 5.027 kb on + strand, within GFF4767 at 5.027 kb on + strand, within GFF4767 at 5.027 kb on + strand, within GFF4767 at 5.027 kb on + strand, within GFF4767 at 5.027 kb on + strand, within GFF4767 at 5.027 kb on + strand, within GFF4767 at 5.027 kb on + strand, within GFF4767 at 5.027 kb on + strand, within GFF4767 at 5.027 kb on + strand, within GFF4767 at 5.028 kb on - strand, within GFF4767 at 5.028 kb on - strand, within GFF4767 at 5.028 kb on - strand, within GFF4767 at 5.028 kb on - strand, within GFF4767 at 5.028 kb on - strand, within GFF4767 at 5.028 kb on - strand, within GFF4767 at 5.028 kb on - strand, within GFF4767 at 5.028 kb on - strand, within GFF4767 at 5.028 kb on - strand, within GFF4767
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 2,565 + GFF4765 0.11 -0.9 2,565 + GFF4765 0.11 +0.1 2,565 + GFF4765 0.11 -0.7 2,566 - GFF4765 0.12 +0.0 2,566 - GFF4765 0.12 -0.9 2,566 - GFF4765 0.12 -0.7 2,566 - GFF4765 0.12 +0.4 2,566 - GFF4765 0.12 +0.0 2,567 + GFF4765 0.12 +1.2 2,567 + GFF4765 0.12 -1.2 2,567 + GFF4765 0.12 +0.7 2,568 - GFF4765 0.12 +1.0 2,568 - GFF4765 0.12 -0.7 2,742 + GFF4765 0.67 +1.7 2,743 - GFF4765 0.67 +0.5 2,982 + +0.2 2,982 + +0.7 3,373 + GFF4766 0.10 -0.2 3,374 - GFF4766 0.10 +1.6 3,577 + GFF4766 0.36 +0.8 3,577 + GFF4766 0.36 +0.5 3,578 - GFF4766 0.36 -1.1 3,592 + GFF4766 0.38 -0.4 3,593 - GFF4766 0.38 +0.4 3,593 - GFF4766 0.38 +1.2 3,593 - GFF4766 0.38 -0.6 3,854 - GFF4766 0.71 -0.7 4,003 + -0.5 4,003 + +0.4 4,003 + +0.4 4,003 + +1.3 4,003 + +0.3 4,004 - +0.6 4,004 - -0.4 4,004 - +0.9 4,054 + +0.2 4,054 + +1.0 4,283 + +0.3 4,405 + GFF4767 0.15 +0.2 4,406 - GFF4767 0.15 -0.1 4,406 - GFF4767 0.15 +0.4 4,440 - GFF4767 0.17 -0.1 4,440 - GFF4767 0.17 +0.5 4,440 - GFF4767 0.17 -0.6 4,440 - GFF4767 0.17 -0.8 4,440 - GFF4767 0.17 +0.3 4,454 - GFF4767 0.17 +0.5 4,523 + GFF4767 0.22 -0.3 4,523 + GFF4767 0.22 -0.3 4,524 - GFF4767 0.22 +0.9 4,557 + GFF4767 0.24 -0.1 4,557 + GFF4767 0.24 +0.8 4,557 + GFF4767 0.24 +0.8 4,558 - GFF4767 0.24 -0.5 4,558 - GFF4767 0.24 -0.1 4,558 - GFF4767 0.24 -0.1 4,562 + GFF4767 0.24 +0.5 4,562 + GFF4767 0.24 +0.3 4,611 - GFF4767 0.27 -1.4 4,836 - GFF4767 0.41 +0.5 5,027 + GFF4767 0.52 -0.3 5,027 + GFF4767 0.52 +0.2 5,027 + GFF4767 0.52 +0.7 5,027 + GFF4767 0.52 -0.8 5,027 + GFF4767 0.52 -0.4 5,027 + GFF4767 0.52 +0.2 5,027 + GFF4767 0.52 -0.7 5,027 + GFF4767 0.52 +1.5 5,027 + GFF4767 0.52 -0.2 5,028 - GFF4767 0.52 -0.4 5,028 - GFF4767 0.52 +1.3 5,028 - GFF4767 0.52 +0.2 5,028 - GFF4767 0.52 +0.6 5,028 - GFF4767 0.52 -0.2 5,028 - GFF4767 0.52 -0.5 5,028 - GFF4767 0.52 +0.2 5,028 - GFF4767 0.52 +1.5 5,028 - GFF4767 0.52 +0.4
Or see this region's nucleotide sequence