Strain Fitness in Xanthobacter sp. DMC5 around GFF473

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF471 and GFF472 are separated by 1 nucleotidesGFF472 and GFF473 are separated by 28 nucleotidesGFF473 and GFF474 are separated by 91 nucleotides GFF471 - hypothetical protein, at 497,312 to 498,247 GFF471 GFF472 - hypothetical protein, at 498,249 to 499,202 GFF472 GFF473 - Leu/Ile/Val-binding protein, at 499,231 to 500,421 GFF473 GFF474 - HTH-type transcriptional repressor NagR, at 500,513 to 501,334 GFF474 Position (kb) 499 500 501Strain fitness (log2 ratio) -2 -1 0 1at 498.342 kb on + strandat 498.388 kb on + strand, within GFF472at 498.389 kb on - strand, within GFF472at 498.389 kb on - strand, within GFF472at 498.389 kb on - strand, within GFF472at 498.556 kb on + strand, within GFF472at 498.556 kb on + strand, within GFF472at 498.557 kb on - strand, within GFF472at 498.598 kb on + strand, within GFF472at 498.598 kb on + strand, within GFF472at 498.599 kb on - strand, within GFF472at 499.006 kb on + strand, within GFF472at 499.006 kb on + strand, within GFF472at 499.007 kb on - strand, within GFF472at 499.007 kb on - strand, within GFF472at 499.007 kb on - strand, within GFF472at 499.238 kb on + strandat 499.439 kb on + strand, within GFF473at 499.440 kb on - strand, within GFF473at 499.454 kb on + strand, within GFF473at 499.454 kb on + strand, within GFF473at 499.454 kb on + strand, within GFF473at 499.454 kb on + strand, within GFF473at 499.454 kb on + strand, within GFF473at 499.454 kb on + strand, within GFF473at 499.454 kb on + strand, within GFF473at 499.455 kb on - strand, within GFF473at 499.455 kb on - strand, within GFF473at 499.455 kb on - strand, within GFF473at 499.455 kb on - strand, within GFF473at 499.455 kb on - strand, within GFF473at 499.455 kb on - strand, within GFF473at 499.487 kb on + strand, within GFF473at 499.487 kb on + strand, within GFF473at 499.488 kb on - strand, within GFF473at 499.488 kb on - strand, within GFF473at 499.488 kb on - strand, within GFF473at 499.576 kb on + strand, within GFF473at 499.631 kb on + strand, within GFF473at 499.631 kb on + strand, within GFF473at 499.631 kb on + strand, within GFF473at 499.632 kb on - strand, within GFF473at 499.653 kb on + strand, within GFF473at 499.796 kb on + strand, within GFF473at 499.796 kb on + strand, within GFF473at 499.796 kb on + strand, within GFF473at 499.797 kb on - strand, within GFF473at 499.797 kb on - strand, within GFF473at 499.913 kb on + strand, within GFF473at 499.913 kb on + strand, within GFF473at 499.913 kb on + strand, within GFF473at 499.914 kb on - strand, within GFF473at 499.967 kb on + strand, within GFF473at 499.967 kb on + strand, within GFF473at 499.967 kb on + strand, within GFF473at 499.967 kb on + strand, within GFF473at 499.967 kb on + strand, within GFF473at 499.968 kb on - strand, within GFF473at 499.968 kb on - strand, within GFF473at 499.968 kb on - strand, within GFF473at 500.168 kb on + strand, within GFF473at 500.168 kb on + strand, within GFF473at 500.169 kb on - strand, within GFF473at 500.171 kb on + strand, within GFF473at 500.171 kb on + strand, within GFF473at 500.171 kb on + strand, within GFF473at 500.172 kb on - strand, within GFF473at 500.172 kb on - strand, within GFF473at 500.515 kb on - strandat 500.589 kb on + strandat 500.655 kb on + strand, within GFF474at 500.703 kb on + strand, within GFF474at 500.703 kb on + strand, within GFF474at 500.703 kb on + strand, within GFF474at 500.703 kb on + strand, within GFF474at 500.704 kb on - strand, within GFF474at 500.704 kb on - strand, within GFF474at 500.704 kb on - strand, within GFF474at 500.704 kb on - strand, within GFF474at 500.844 kb on + strand, within GFF474at 500.845 kb on - strand, within GFF474at 500.851 kb on - strand, within GFF474at 501.212 kb on - strand, within GFF474at 501.212 kb on - strand, within GFF474at 501.212 kb on - strand, within GFF474at 501.212 kb on - strand, within GFF474at 501.249 kb on + strand, within GFF474at 501.249 kb on + strand, within GFF474at 501.250 kb on - strand, within GFF474at 501.399 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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498,342 + -0.1
498,388 + GFF472 0.15 -0.8
498,389 - GFF472 0.15 -0.6
498,389 - GFF472 0.15 -0.2
498,389 - GFF472 0.15 -0.2
498,556 + GFF472 0.32 +0.6
498,556 + GFF472 0.32 -1.2
498,557 - GFF472 0.32 +0.2
498,598 + GFF472 0.37 +0.6
498,598 + GFF472 0.37 -0.2
498,599 - GFF472 0.37 -0.5
499,006 + GFF472 0.79 -0.8
499,006 + GFF472 0.79 -0.1
499,007 - GFF472 0.79 +0.9
499,007 - GFF472 0.79 -1.6
499,007 - GFF472 0.79 +0.4
499,238 + -0.6
499,439 + GFF473 0.17 -0.3
499,440 - GFF473 0.18 -2.1
499,454 + GFF473 0.19 -0.5
499,454 + GFF473 0.19 +1.1
499,454 + GFF473 0.19 -0.6
499,454 + GFF473 0.19 -1.6
499,454 + GFF473 0.19 +0.4
499,454 + GFF473 0.19 -0.7
499,454 + GFF473 0.19 -1.0
499,455 - GFF473 0.19 -1.1
499,455 - GFF473 0.19 -0.6
499,455 - GFF473 0.19 -0.0
499,455 - GFF473 0.19 -0.0
499,455 - GFF473 0.19 -0.2
499,455 - GFF473 0.19 -2.2
499,487 + GFF473 0.21 +0.4
499,487 + GFF473 0.21 -0.1
499,488 - GFF473 0.22 -0.2
499,488 - GFF473 0.22 -2.5
499,488 - GFF473 0.22 +0.1
499,576 + GFF473 0.29 -2.2
499,631 + GFF473 0.34 -1.0
499,631 + GFF473 0.34 +1.2
499,631 + GFF473 0.34 -0.3
499,632 - GFF473 0.34 +1.3
499,653 + GFF473 0.35 -0.3
499,796 + GFF473 0.47 -0.4
499,796 + GFF473 0.47 -0.0
499,796 + GFF473 0.47 -0.8
499,797 - GFF473 0.48 -0.4
499,797 - GFF473 0.48 +0.2
499,913 + GFF473 0.57 -0.1
499,913 + GFF473 0.57 -0.9
499,913 + GFF473 0.57 +1.0
499,914 - GFF473 0.57 -0.5
499,967 + GFF473 0.62 -0.5
499,967 + GFF473 0.62 -1.0
499,967 + GFF473 0.62 -0.8
499,967 + GFF473 0.62 +1.3
499,967 + GFF473 0.62 +0.2
499,968 - GFF473 0.62 -0.2
499,968 - GFF473 0.62 -1.2
499,968 - GFF473 0.62 +0.0
500,168 + GFF473 0.79 -0.6
500,168 + GFF473 0.79 +0.3
500,169 - GFF473 0.79 -0.2
500,171 + GFF473 0.79 +0.4
500,171 + GFF473 0.79 +1.1
500,171 + GFF473 0.79 -0.3
500,172 - GFF473 0.79 +0.9
500,172 - GFF473 0.79 +0.5
500,515 - -0.5
500,589 + -1.0
500,655 + GFF474 0.17 +0.2
500,703 + GFF474 0.23 +0.3
500,703 + GFF474 0.23 -0.1
500,703 + GFF474 0.23 +0.2
500,703 + GFF474 0.23 -0.5
500,704 - GFF474 0.23 -0.1
500,704 - GFF474 0.23 -1.0
500,704 - GFF474 0.23 -0.4
500,704 - GFF474 0.23 +0.3
500,844 + GFF474 0.40 +0.1
500,845 - GFF474 0.40 +0.2
500,851 - GFF474 0.41 +0.5
501,212 - GFF474 0.85 -0.0
501,212 - GFF474 0.85 -1.6
501,212 - GFF474 0.85 -1.2
501,212 - GFF474 0.85 +0.2
501,249 + GFF474 0.90 -0.3
501,249 + GFF474 0.90 +0.4
501,250 - GFF474 0.90 +0.8
501,399 - -0.2

Or see this region's nucleotide sequence