Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF467 and GFF468 overlap by 8 nucleotides GFF468 and GFF469 overlap by 4 nucleotides GFF469 and GFF470 are separated by 4 nucleotides
GFF467 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 493,750 to 494,463
GFF467
GFF468 - Lipopolysaccharide export system ATP-binding protein LptB, at 494,456 to 495,247
GFF468
GFF469 - hypothetical protein, at 495,244 to 496,245
GFF469
GFF470 - High-affinity branched-chain amino acid transport system permease protein LivH, at 496,250 to 497,131
GFF470
Position (kb) 495
496
497 Strain fitness (log2 ratio) -2
-1
0
1 at 494.484 kb on + strand at 494.552 kb on - strand, within GFF468 at 495.047 kb on + strand, within GFF468 at 495.395 kb on + strand, within GFF469 at 495.422 kb on + strand, within GFF469 at 495.422 kb on + strand, within GFF469 at 495.422 kb on + strand, within GFF469 at 495.423 kb on - strand, within GFF469 at 495.503 kb on + strand, within GFF469 at 495.504 kb on - strand, within GFF469 at 495.504 kb on - strand, within GFF469 at 495.521 kb on + strand, within GFF469 at 495.521 kb on + strand, within GFF469 at 495.522 kb on - strand, within GFF469 at 495.522 kb on - strand, within GFF469 at 495.863 kb on + strand, within GFF469 at 495.864 kb on - strand, within GFF469 at 495.864 kb on - strand, within GFF469 at 495.962 kb on + strand, within GFF469 at 495.990 kb on - strand, within GFF469 at 495.990 kb on - strand, within GFF469 at 495.990 kb on - strand, within GFF469 at 496.040 kb on + strand, within GFF469 at 496.107 kb on + strand, within GFF469 at 496.112 kb on + strand, within GFF469 at 496.339 kb on + strand, within GFF470 at 496.356 kb on + strand, within GFF470 at 496.356 kb on + strand, within GFF470 at 496.356 kb on + strand, within GFF470 at 496.356 kb on + strand, within GFF470 at 496.356 kb on + strand, within GFF470 at 496.356 kb on + strand, within GFF470 at 496.356 kb on + strand, within GFF470 at 496.356 kb on + strand, within GFF470 at 496.357 kb on - strand, within GFF470 at 496.357 kb on - strand, within GFF470 at 496.357 kb on - strand, within GFF470 at 496.482 kb on + strand, within GFF470 at 496.765 kb on - strand, within GFF470 at 497.070 kb on + strand at 497.070 kb on + strand at 497.071 kb on - strand at 497.071 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 494,484 + -1.3 494,552 - GFF468 0.12 -0.4 495,047 + GFF468 0.75 -0.4 495,395 + GFF469 0.15 +0.2 495,422 + GFF469 0.18 +0.1 495,422 + GFF469 0.18 -0.5 495,422 + GFF469 0.18 +0.4 495,423 - GFF469 0.18 -0.2 495,503 + GFF469 0.26 -2.2 495,504 - GFF469 0.26 +0.2 495,504 - GFF469 0.26 -0.7 495,521 + GFF469 0.28 -0.8 495,521 + GFF469 0.28 +0.3 495,522 - GFF469 0.28 +0.9 495,522 - GFF469 0.28 +0.6 495,863 + GFF469 0.62 -0.6 495,864 - GFF469 0.62 +0.4 495,864 - GFF469 0.62 +0.3 495,962 + GFF469 0.72 -0.1 495,990 - GFF469 0.74 -1.2 495,990 - GFF469 0.74 -0.4 495,990 - GFF469 0.74 -0.9 496,040 + GFF469 0.79 -0.8 496,107 + GFF469 0.86 +0.0 496,112 + GFF469 0.87 -0.3 496,339 + GFF470 0.10 -0.6 496,356 + GFF470 0.12 -0.1 496,356 + GFF470 0.12 +0.6 496,356 + GFF470 0.12 -0.3 496,356 + GFF470 0.12 -0.7 496,356 + GFF470 0.12 +0.3 496,356 + GFF470 0.12 +0.1 496,356 + GFF470 0.12 -0.7 496,356 + GFF470 0.12 +0.4 496,357 - GFF470 0.12 -0.2 496,357 - GFF470 0.12 +0.1 496,357 - GFF470 0.12 -0.6 496,482 + GFF470 0.26 -0.7 496,765 - GFF470 0.58 +0.1 497,070 + -0.3 497,070 + -0.6 497,071 - +0.3 497,071 - -0.2
Or see this region's nucleotide sequence