Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4667 and GFF4668 are separated by 85 nucleotides GFF4668 and GFF4669 are separated by 73 nucleotides GFF4669 and GFF4670 are separated by 68 nucleotides
GFF4667 - 8-oxoguanine deaminase, at 74,532 to 75,896
GFF4667
GFF4668 - hypothetical protein, at 75,982 to 76,764
GFF4668
GFF4669 - hypothetical protein, at 76,838 to 77,200
GFF4669
GFF4670 - hypothetical protein, at 77,269 to 78,060
GFF4670
Position (kb) 76
77
78 Strain fitness (log2 ratio) -1
0
1
2 at 75.898 kb on - strand at 76.010 kb on - strand at 76.010 kb on - strand at 76.378 kb on + strand, within GFF4668 at 76.436 kb on - strand, within GFF4668 at 76.447 kb on + strand, within GFF4668 at 76.448 kb on - strand, within GFF4668 at 76.483 kb on + strand, within GFF4668 at 76.562 kb on - strand, within GFF4668 at 76.702 kb on + strand at 76.924 kb on - strand, within GFF4669 at 76.996 kb on - strand, within GFF4669 at 77.113 kb on - strand, within GFF4669 at 77.200 kb on + strand at 77.200 kb on + strand at 77.201 kb on - strand at 77.201 kb on - strand at 77.201 kb on - strand at 77.381 kb on + strand, within GFF4670 at 77.396 kb on + strand, within GFF4670 at 77.397 kb on - strand, within GFF4670 at 77.432 kb on + strand, within GFF4670 at 77.432 kb on + strand, within GFF4670 at 77.433 kb on - strand, within GFF4670 at 77.690 kb on + strand, within GFF4670 at 77.690 kb on + strand, within GFF4670 at 77.816 kb on + strand, within GFF4670 at 77.816 kb on + strand, within GFF4670 at 77.816 kb on + strand, within GFF4670 at 77.816 kb on + strand, within GFF4670 at 78.054 kb on + strand at 78.055 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 75,898 - +0.0 76,010 - +0.3 76,010 - +0.8 76,378 + GFF4668 0.51 -0.1 76,436 - GFF4668 0.58 +1.0 76,447 + GFF4668 0.59 -0.3 76,448 - GFF4668 0.60 +0.3 76,483 + GFF4668 0.64 +0.3 76,562 - GFF4668 0.74 -1.5 76,702 + +1.9 76,924 - GFF4669 0.24 +0.3 76,996 - GFF4669 0.44 +0.7 77,113 - GFF4669 0.76 -0.4 77,200 + +0.0 77,200 + -1.0 77,201 - +0.7 77,201 - -0.4 77,201 - -0.1 77,381 + GFF4670 0.14 -0.2 77,396 + GFF4670 0.16 -0.7 77,397 - GFF4670 0.16 -0.2 77,432 + GFF4670 0.21 +0.0 77,432 + GFF4670 0.21 +0.7 77,433 - GFF4670 0.21 -1.6 77,690 + GFF4670 0.53 +0.9 77,690 + GFF4670 0.53 +0.3 77,816 + GFF4670 0.69 +0.3 77,816 + GFF4670 0.69 +0.4 77,816 + GFF4670 0.69 +0.2 77,816 + GFF4670 0.69 -0.1 78,054 + -0.8 78,055 - +0.3
Or see this region's nucleotide sequence