Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF459 and GFF460 are separated by 218 nucleotides GFF460 and GFF461 are separated by 9 nucleotides GFF461 and GFF462 are separated by 31 nucleotides GFF462 and GFF463 are separated by 185 nucleotides
GFF459 - hypothetical protein, at 487,594 to 488,688
GFF459
GFF460 - hypothetical protein, at 488,907 to 489,233
GFF460
GFF461 - hypothetical protein, at 489,243 to 489,767
GFF461
GFF462 - hypothetical protein, at 489,799 to 490,302
GFF462
GFF463 - hypothetical protein, at 490,488 to 491,861
GFF463
Position (kb) 489
490 Strain fitness (log2 ratio) -1
0
1 at 488.297 kb on + strand, within GFF459 at 488.298 kb on - strand, within GFF459 at 488.298 kb on - strand, within GFF459 at 488.347 kb on + strand, within GFF459 at 488.360 kb on + strand, within GFF459 at 488.360 kb on + strand, within GFF459 at 488.361 kb on - strand, within GFF459 at 488.634 kb on + strand at 488.635 kb on - strand at 488.635 kb on - strand at 488.635 kb on - strand at 488.749 kb on + strand at 488.934 kb on + strand at 488.934 kb on + strand at 488.935 kb on - strand at 488.955 kb on + strand, within GFF460 at 488.979 kb on + strand, within GFF460 at 488.979 kb on + strand, within GFF460 at 488.979 kb on + strand, within GFF460 at 488.979 kb on + strand, within GFF460 at 488.980 kb on - strand, within GFF460 at 488.980 kb on - strand, within GFF460 at 489.176 kb on - strand, within GFF460 at 489.181 kb on - strand, within GFF460 at 489.244 kb on + strand at 489.301 kb on + strand, within GFF461 at 489.302 kb on - strand, within GFF461 at 489.333 kb on + strand, within GFF461 at 489.334 kb on - strand, within GFF461 at 489.334 kb on - strand, within GFF461 at 489.479 kb on - strand, within GFF461 at 489.479 kb on - strand, within GFF461 at 489.479 kb on - strand, within GFF461 at 489.485 kb on + strand, within GFF461 at 489.485 kb on + strand, within GFF461 at 489.486 kb on - strand, within GFF461 at 489.486 kb on - strand, within GFF461 at 489.486 kb on - strand, within GFF461 at 489.486 kb on - strand, within GFF461 at 489.535 kb on + strand, within GFF461 at 489.733 kb on + strand at 489.733 kb on + strand at 489.733 kb on + strand at 489.884 kb on + strand, within GFF462 at 489.884 kb on + strand, within GFF462 at 489.885 kb on - strand, within GFF462 at 489.885 kb on - strand, within GFF462 at 490.041 kb on + strand, within GFF462 at 490.434 kb on + strand at 490.435 kb on - strand at 490.444 kb on + strand at 490.445 kb on - strand at 490.445 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 488,297 + GFF459 0.64 -0.6 488,298 - GFF459 0.64 +1.1 488,298 - GFF459 0.64 -0.4 488,347 + GFF459 0.69 +0.5 488,360 + GFF459 0.70 -0.8 488,360 + GFF459 0.70 -0.8 488,361 - GFF459 0.70 -0.1 488,634 + -1.1 488,635 - +0.1 488,635 - -0.8 488,635 - -1.3 488,749 + +0.8 488,934 + -1.0 488,934 + -0.1 488,935 - -1.0 488,955 + GFF460 0.15 -0.2 488,979 + GFF460 0.22 -0.3 488,979 + GFF460 0.22 -0.2 488,979 + GFF460 0.22 +1.1 488,979 + GFF460 0.22 -0.2 488,980 - GFF460 0.22 +0.2 488,980 - GFF460 0.22 +0.5 489,176 - GFF460 0.82 -0.8 489,181 - GFF460 0.84 -0.0 489,244 + -1.1 489,301 + GFF461 0.11 -0.4 489,302 - GFF461 0.11 +0.5 489,333 + GFF461 0.17 +0.0 489,334 - GFF461 0.17 +1.3 489,334 - GFF461 0.17 -0.9 489,479 - GFF461 0.45 +0.3 489,479 - GFF461 0.45 -0.0 489,479 - GFF461 0.45 -0.7 489,485 + GFF461 0.46 -0.5 489,485 + GFF461 0.46 +0.0 489,486 - GFF461 0.46 -1.5 489,486 - GFF461 0.46 -0.2 489,486 - GFF461 0.46 -1.0 489,486 - GFF461 0.46 +1.2 489,535 + GFF461 0.56 +0.6 489,733 + -0.4 489,733 + -0.0 489,733 + -0.0 489,884 + GFF462 0.17 +0.2 489,884 + GFF462 0.17 +1.5 489,885 - GFF462 0.17 -0.8 489,885 - GFF462 0.17 -1.0 490,041 + GFF462 0.48 -0.3 490,434 + -1.0 490,435 - +1.2 490,444 + -0.6 490,445 - -1.2 490,445 - -0.2
Or see this region's nucleotide sequence