Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4560 and GFF4561 are separated by 77 nucleotides GFF4561 and GFF4562 overlap by 4 nucleotides
GFF4560 - Heme oxygenase PigA, at 146,391 to 146,996
GFF4560
GFF4561 - Virginiamycin B lyase, at 147,074 to 149,716
GFF4561
GFF4562 - Putative FAD-dependent oxidoreductase LodB, at 149,713 to 150,771
GFF4562
Position (kb) 147
148
149
150 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 146.094 kb on + strand at 146.094 kb on + strand at 146.095 kb on - strand at 146.210 kb on - strand at 146.338 kb on - strand at 146.378 kb on + strand at 146.379 kb on - strand at 146.530 kb on - strand, within GFF4560 at 146.553 kb on + strand, within GFF4560 at 146.553 kb on + strand, within GFF4560 at 146.553 kb on + strand, within GFF4560 at 146.554 kb on - strand, within GFF4560 at 146.554 kb on - strand, within GFF4560 at 146.583 kb on + strand, within GFF4560 at 146.584 kb on - strand, within GFF4560 at 146.748 kb on + strand, within GFF4560 at 146.748 kb on + strand, within GFF4560 at 146.748 kb on + strand, within GFF4560 at 146.749 kb on - strand, within GFF4560 at 146.749 kb on - strand, within GFF4560 at 146.749 kb on - strand, within GFF4560 at 146.749 kb on - strand, within GFF4560 at 146.973 kb on + strand at 146.973 kb on + strand at 146.973 kb on + strand at 146.974 kb on - strand at 146.974 kb on - strand at 146.974 kb on - strand at 147.024 kb on - strand at 147.039 kb on - strand at 147.347 kb on + strand, within GFF4561 at 147.711 kb on - strand, within GFF4561 at 147.866 kb on + strand, within GFF4561 at 147.867 kb on - strand, within GFF4561 at 147.867 kb on - strand, within GFF4561 at 148.230 kb on - strand, within GFF4561 at 148.679 kb on + strand, within GFF4561 at 148.679 kb on + strand, within GFF4561 at 148.679 kb on + strand, within GFF4561 at 148.680 kb on - strand, within GFF4561 at 148.680 kb on - strand, within GFF4561 at 148.919 kb on + strand, within GFF4561 at 148.920 kb on - strand, within GFF4561 at 148.937 kb on + strand, within GFF4561 at 148.938 kb on - strand, within GFF4561 at 149.090 kb on + strand, within GFF4561 at 149.090 kb on + strand, within GFF4561 at 149.210 kb on + strand, within GFF4561 at 149.210 kb on + strand, within GFF4561 at 149.210 kb on + strand, within GFF4561 at 149.211 kb on - strand, within GFF4561 at 149.211 kb on - strand, within GFF4561 at 149.211 kb on - strand, within GFF4561 at 149.211 kb on - strand, within GFF4561 at 149.447 kb on + strand, within GFF4561 at 149.460 kb on - strand at 149.460 kb on - strand at 149.468 kb on + strand at 149.468 kb on + strand at 149.469 kb on - strand at 149.597 kb on + strand at 149.597 kb on + strand at 149.597 kb on + strand at 149.597 kb on + strand at 149.825 kb on + strand, within GFF4562 at 149.826 kb on - strand, within GFF4562 at 149.826 kb on - strand, within GFF4562 at 149.826 kb on - strand, within GFF4562 at 149.826 kb on - strand, within GFF4562 at 150.497 kb on - strand, within GFF4562
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 146,094 + -0.3 146,094 + -0.2 146,095 - -0.7 146,210 - -0.9 146,338 - +1.7 146,378 + +1.2 146,379 - +0.8 146,530 - GFF4560 0.23 -1.5 146,553 + GFF4560 0.27 +0.3 146,553 + GFF4560 0.27 +0.1 146,553 + GFF4560 0.27 -1.0 146,554 - GFF4560 0.27 +2.0 146,554 - GFF4560 0.27 -0.4 146,583 + GFF4560 0.32 -0.3 146,584 - GFF4560 0.32 +0.3 146,748 + GFF4560 0.59 -0.1 146,748 + GFF4560 0.59 -0.5 146,748 + GFF4560 0.59 +0.7 146,749 - GFF4560 0.59 +0.5 146,749 - GFF4560 0.59 +0.7 146,749 - GFF4560 0.59 -0.6 146,749 - GFF4560 0.59 +1.0 146,973 + +0.2 146,973 + -0.0 146,973 + -0.0 146,974 - -0.0 146,974 - +0.4 146,974 - -0.2 147,024 - -1.2 147,039 - -0.7 147,347 + GFF4561 0.10 +0.5 147,711 - GFF4561 0.24 +0.4 147,866 + GFF4561 0.30 -2.0 147,867 - GFF4561 0.30 +0.8 147,867 - GFF4561 0.30 +1.1 148,230 - GFF4561 0.44 +0.5 148,679 + GFF4561 0.61 +0.3 148,679 + GFF4561 0.61 -0.7 148,679 + GFF4561 0.61 +0.8 148,680 - GFF4561 0.61 -0.8 148,680 - GFF4561 0.61 -0.5 148,919 + GFF4561 0.70 -0.3 148,920 - GFF4561 0.70 -0.3 148,937 + GFF4561 0.70 +0.3 148,938 - GFF4561 0.71 +0.2 149,090 + GFF4561 0.76 +0.1 149,090 + GFF4561 0.76 +0.2 149,210 + GFF4561 0.81 +0.8 149,210 + GFF4561 0.81 +0.3 149,210 + GFF4561 0.81 +0.0 149,211 - GFF4561 0.81 +0.3 149,211 - GFF4561 0.81 -0.1 149,211 - GFF4561 0.81 +0.8 149,211 - GFF4561 0.81 +0.5 149,447 + GFF4561 0.90 +2.9 149,460 - +0.4 149,460 - +0.6 149,468 + -0.5 149,468 + +0.1 149,469 - +0.2 149,597 + +0.2 149,597 + +1.3 149,597 + -0.2 149,597 + -0.7 149,825 + GFF4562 0.11 -0.8 149,826 - GFF4562 0.11 -2.0 149,826 - GFF4562 0.11 -0.2 149,826 - GFF4562 0.11 +0.4 149,826 - GFF4562 0.11 -0.0 150,497 - GFF4562 0.74 +0.1
Or see this region's nucleotide sequence