Strain Fitness in Xanthobacter sp. DMC5 around GFF4539

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4538 and GFF4539 are separated by 40 nucleotidesGFF4539 and GFF4540 are separated by 438 nucleotides GFF4538 - Acylamidase, at 116,607 to 118,019 GFF4538 GFF4539 - Putative thiamine biosynthesis protein, at 118,060 to 119,076 GFF4539 GFF4540 - HTH-type transcriptional repressor NicR, at 119,515 to 120,033 GFF4540 Position (kb) 118 119 120Strain fitness (log2 ratio) -2 -1 0 1at 117.171 kb on + strand, within GFF4538at 117.171 kb on + strand, within GFF4538at 117.171 kb on + strand, within GFF4538at 117.171 kb on + strand, within GFF4538at 117.171 kb on + strand, within GFF4538at 117.172 kb on - strand, within GFF4538at 117.172 kb on - strand, within GFF4538at 117.172 kb on - strand, within GFF4538at 117.172 kb on - strand, within GFF4538at 117.492 kb on + strand, within GFF4538at 117.492 kb on + strand, within GFF4538at 117.492 kb on + strand, within GFF4538at 117.492 kb on + strand, within GFF4538at 117.492 kb on + strand, within GFF4538at 117.493 kb on - strand, within GFF4538at 117.716 kb on + strand, within GFF4538at 117.748 kb on + strand, within GFF4538at 117.839 kb on - strand, within GFF4538at 118.061 kb on + strandat 118.352 kb on + strand, within GFF4539at 118.352 kb on + strand, within GFF4539at 118.352 kb on + strand, within GFF4539at 118.353 kb on - strand, within GFF4539at 118.353 kb on - strand, within GFF4539at 118.353 kb on - strand, within GFF4539at 118.353 kb on - strand, within GFF4539at 118.353 kb on - strand, within GFF4539at 118.353 kb on - strand, within GFF4539at 118.460 kb on + strand, within GFF4539at 118.460 kb on + strand, within GFF4539at 118.460 kb on + strand, within GFF4539at 118.460 kb on + strand, within GFF4539at 118.461 kb on - strand, within GFF4539at 118.461 kb on - strand, within GFF4539at 118.461 kb on - strand, within GFF4539at 118.461 kb on - strand, within GFF4539at 118.559 kb on + strand, within GFF4539at 118.559 kb on + strand, within GFF4539at 118.559 kb on + strand, within GFF4539at 118.559 kb on + strand, within GFF4539at 118.560 kb on - strand, within GFF4539at 118.560 kb on - strand, within GFF4539at 118.713 kb on + strand, within GFF4539at 118.756 kb on + strand, within GFF4539at 118.757 kb on - strand, within GFF4539at 118.757 kb on - strand, within GFF4539at 118.839 kb on - strand, within GFF4539at 118.861 kb on + strand, within GFF4539at 118.861 kb on + strand, within GFF4539at 118.862 kb on - strand, within GFF4539at 118.862 kb on - strand, within GFF4539at 118.870 kb on + strand, within GFF4539at 118.870 kb on + strand, within GFF4539at 118.959 kb on + strand, within GFF4539at 119.037 kb on + strandat 119.146 kb on + strandat 119.573 kb on - strand, within GFF4540at 119.654 kb on - strand, within GFF4540at 119.654 kb on - strand, within GFF4540at 119.860 kb on + strand, within GFF4540at 119.860 kb on + strand, within GFF4540at 119.861 kb on - strand, within GFF4540at 119.861 kb on - strand, within GFF4540at 119.861 kb on - strand, within GFF4540

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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117,171 + GFF4538 0.40 -0.1
117,171 + GFF4538 0.40 -2.0
117,171 + GFF4538 0.40 -0.2
117,171 + GFF4538 0.40 -0.1
117,171 + GFF4538 0.40 -0.8
117,172 - GFF4538 0.40 -0.5
117,172 - GFF4538 0.40 -0.0
117,172 - GFF4538 0.40 +0.3
117,172 - GFF4538 0.40 -0.2
117,492 + GFF4538 0.63 +0.5
117,492 + GFF4538 0.63 +0.3
117,492 + GFF4538 0.63 -2.0
117,492 + GFF4538 0.63 -0.4
117,492 + GFF4538 0.63 -0.5
117,493 - GFF4538 0.63 +0.1
117,716 + GFF4538 0.78 -0.6
117,748 + GFF4538 0.81 -0.1
117,839 - GFF4538 0.87 +0.5
118,061 + -1.1
118,352 + GFF4539 0.29 -0.2
118,352 + GFF4539 0.29 -0.2
118,352 + GFF4539 0.29 +1.2
118,353 - GFF4539 0.29 +0.1
118,353 - GFF4539 0.29 -1.7
118,353 - GFF4539 0.29 -0.6
118,353 - GFF4539 0.29 +0.1
118,353 - GFF4539 0.29 +0.1
118,353 - GFF4539 0.29 -0.2
118,460 + GFF4539 0.39 +1.1
118,460 + GFF4539 0.39 -1.7
118,460 + GFF4539 0.39 -1.4
118,460 + GFF4539 0.39 +0.3
118,461 - GFF4539 0.39 +0.7
118,461 - GFF4539 0.39 +0.0
118,461 - GFF4539 0.39 -0.6
118,461 - GFF4539 0.39 -0.1
118,559 + GFF4539 0.49 +0.6
118,559 + GFF4539 0.49 -0.7
118,559 + GFF4539 0.49 +1.0
118,559 + GFF4539 0.49 +0.5
118,560 - GFF4539 0.49 -0.3
118,560 - GFF4539 0.49 +0.8
118,713 + GFF4539 0.64 +0.6
118,756 + GFF4539 0.68 +0.5
118,757 - GFF4539 0.69 +0.6
118,757 - GFF4539 0.69 +0.1
118,839 - GFF4539 0.77 +0.4
118,861 + GFF4539 0.79 +0.1
118,861 + GFF4539 0.79 +1.2
118,862 - GFF4539 0.79 +0.0
118,862 - GFF4539 0.79 -0.1
118,870 + GFF4539 0.80 -1.1
118,870 + GFF4539 0.80 -0.0
118,959 + GFF4539 0.88 +0.4
119,037 + +0.0
119,146 + -1.0
119,573 - GFF4540 0.11 -0.2
119,654 - GFF4540 0.27 -1.3
119,654 - GFF4540 0.27 -0.9
119,860 + GFF4540 0.66 +1.3
119,860 + GFF4540 0.66 +0.0
119,861 - GFF4540 0.67 -0.5
119,861 - GFF4540 0.67 +0.5
119,861 - GFF4540 0.67 +0.9

Or see this region's nucleotide sequence