Strain Fitness in Xanthobacter sp. DMC5 around GFF4517

Experiment: D,L-Lactate and casaminos (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF4515 and GFF4516 overlap by 4 nucleotidesGFF4516 and GFF4517 are separated by 90 nucleotidesGFF4517 and GFF4518 overlap by 4 nucleotidesGFF4518 and GFF4519 are separated by 0 nucleotidesGFF4519 and GFF4520 overlap by 1 nucleotides GFF4515 - hypothetical protein, at 89,176 to 89,565 GFF4515 GFF4516 - hypothetical protein, at 89,562 to 90,119 GFF4516 GFF4517 - Sensor histidine kinase RcsC, at 90,210 to 92,882 GFF4517 GFF4518 - hypothetical protein, at 92,879 to 93,391 GFF4518 GFF4519 - Chemotaxis protein CheY, at 93,392 to 93,769 GFF4519 GFF4520 - Protein-glutamate methylesterase/protein-glutamine glutaminase, at 93,769 to 94,914 GFF4520 Position (kb) 90 91 92 93Strain fitness (log2 ratio) -2 -1 0 1at 89.441 kb on - strand, within GFF4515at 89.441 kb on - strand, within GFF4515at 89.441 kb on - strand, within GFF4515at 89.441 kb on - strand, within GFF4515at 89.441 kb on - strand, within GFF4515at 89.528 kb on - strandat 89.620 kb on - strand, within GFF4516at 89.634 kb on + strand, within GFF4516at 89.634 kb on + strand, within GFF4516at 89.635 kb on - strand, within GFF4516at 89.671 kb on - strand, within GFF4516at 89.746 kb on - strand, within GFF4516at 89.746 kb on - strand, within GFF4516at 89.746 kb on - strand, within GFF4516at 89.746 kb on - strand, within GFF4516at 89.847 kb on + strand, within GFF4516at 89.847 kb on + strand, within GFF4516at 89.848 kb on - strand, within GFF4516at 89.848 kb on - strand, within GFF4516at 89.848 kb on - strand, within GFF4516at 89.848 kb on - strand, within GFF4516at 89.889 kb on - strand, within GFF4516at 89.930 kb on + strand, within GFF4516at 89.930 kb on + strand, within GFF4516at 89.931 kb on - strand, within GFF4516at 89.931 kb on - strand, within GFF4516at 89.931 kb on - strand, within GFF4516at 89.931 kb on - strand, within GFF4516at 89.931 kb on - strand, within GFF4516at 89.934 kb on + strand, within GFF4516at 89.934 kb on + strand, within GFF4516at 89.935 kb on - strand, within GFF4516at 89.982 kb on + strand, within GFF4516at 89.983 kb on - strand, within GFF4516at 89.984 kb on + strand, within GFF4516at 89.985 kb on - strand, within GFF4516at 90.952 kb on - strand, within GFF4517at 90.952 kb on - strand, within GFF4517at 91.267 kb on - strand, within GFF4517at 91.267 kb on - strand, within GFF4517at 91.901 kb on + strand, within GFF4517at 91.901 kb on + strand, within GFF4517at 92.208 kb on + strand, within GFF4517at 92.209 kb on - strand, within GFF4517at 92.209 kb on - strand, within GFF4517at 92.209 kb on - strand, within GFF4517at 92.235 kb on + strand, within GFF4517at 92.236 kb on - strand, within GFF4517at 92.236 kb on - strand, within GFF4517at 92.448 kb on + strand, within GFF4517at 92.448 kb on + strand, within GFF4517at 92.449 kb on - strand, within GFF4517at 92.449 kb on - strand, within GFF4517at 92.577 kb on + strand, within GFF4517at 92.890 kb on + strandat 92.943 kb on - strand, within GFF4518at 92.943 kb on - strand, within GFF4518at 92.943 kb on - strand, within GFF4518at 92.943 kb on - strand, within GFF4518at 93.181 kb on + strand, within GFF4518at 93.181 kb on + strand, within GFF4518at 93.181 kb on + strand, within GFF4518at 93.182 kb on - strand, within GFF4518at 93.693 kb on - strand, within GFF4519at 93.693 kb on - strand, within GFF4519

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
remove
89,441 - GFF4515 0.68 -0.3
89,441 - GFF4515 0.68 +0.3
89,441 - GFF4515 0.68 -0.1
89,441 - GFF4515 0.68 -0.5
89,441 - GFF4515 0.68 -0.4
89,528 - -0.7
89,620 - GFF4516 0.10 -1.3
89,634 + GFF4516 0.13 -1.0
89,634 + GFF4516 0.13 +0.5
89,635 - GFF4516 0.13 +0.1
89,671 - GFF4516 0.20 -0.9
89,746 - GFF4516 0.33 -1.3
89,746 - GFF4516 0.33 +0.6
89,746 - GFF4516 0.33 +0.6
89,746 - GFF4516 0.33 -0.7
89,847 + GFF4516 0.51 +0.1
89,847 + GFF4516 0.51 +0.0
89,848 - GFF4516 0.51 -0.9
89,848 - GFF4516 0.51 -0.3
89,848 - GFF4516 0.51 +0.2
89,848 - GFF4516 0.51 +0.7
89,889 - GFF4516 0.59 +0.3
89,930 + GFF4516 0.66 -0.6
89,930 + GFF4516 0.66 +0.6
89,931 - GFF4516 0.66 -0.6
89,931 - GFF4516 0.66 -0.1
89,931 - GFF4516 0.66 -0.9
89,931 - GFF4516 0.66 -0.8
89,931 - GFF4516 0.66 +1.1
89,934 + GFF4516 0.67 +1.0
89,934 + GFF4516 0.67 -0.6
89,935 - GFF4516 0.67 +0.3
89,982 + GFF4516 0.75 -0.5
89,983 - GFF4516 0.75 -1.0
89,984 + GFF4516 0.76 +1.5
89,985 - GFF4516 0.76 +1.1
90,952 - GFF4517 0.28 -2.0
90,952 - GFF4517 0.28 +0.4
91,267 - GFF4517 0.40 -0.2
91,267 - GFF4517 0.40 -0.2
91,901 + GFF4517 0.63 -0.5
91,901 + GFF4517 0.63 -0.1
92,208 + GFF4517 0.75 +0.7
92,209 - GFF4517 0.75 +0.9
92,209 - GFF4517 0.75 +0.4
92,209 - GFF4517 0.75 -0.6
92,235 + GFF4517 0.76 -0.3
92,236 - GFF4517 0.76 +0.7
92,236 - GFF4517 0.76 +0.4
92,448 + GFF4517 0.84 +0.1
92,448 + GFF4517 0.84 +0.1
92,449 - GFF4517 0.84 -0.2
92,449 - GFF4517 0.84 +0.5
92,577 + GFF4517 0.89 +0.8
92,890 + -0.1
92,943 - GFF4518 0.12 +0.2
92,943 - GFF4518 0.12 -0.9
92,943 - GFF4518 0.12 +1.5
92,943 - GFF4518 0.12 +0.5
93,181 + GFF4518 0.59 -0.2
93,181 + GFF4518 0.59 -0.5
93,181 + GFF4518 0.59 +0.9
93,182 - GFF4518 0.59 -1.0
93,693 - GFF4519 0.80 +0.1
93,693 - GFF4519 0.80 +0.6

Or see this region's nucleotide sequence