Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4498 and GFF4499 overlap by 20 nucleotides GFF4499 and GFF4500 are separated by 3 nucleotides GFF4500 and GFF4501 are separated by 443 nucleotides
GFF4498 - hypothetical protein, at 74,442 to 74,744
GFF4498
GFF4499 - hypothetical protein, at 74,725 to 75,660
GFF4499
GFF4500 - Motility protein A, at 75,664 to 76,551
GFF4500
GFF4501 - hypothetical protein, at 76,995 to 77,759
GFF4501
Position (kb) 75
76
77 Strain fitness (log2 ratio) -1
0
1 at 74.792 kb on + strand at 74.793 kb on - strand at 75.301 kb on - strand, within GFF4499 at 75.350 kb on + strand, within GFF4499 at 75.446 kb on + strand, within GFF4499 at 75.446 kb on + strand, within GFF4499 at 75.447 kb on - strand, within GFF4499 at 75.447 kb on - strand, within GFF4499 at 75.497 kb on + strand, within GFF4499 at 75.497 kb on + strand, within GFF4499 at 75.498 kb on - strand, within GFF4499 at 75.500 kb on + strand, within GFF4499 at 75.500 kb on + strand, within GFF4499 at 75.500 kb on + strand, within GFF4499 at 75.500 kb on + strand, within GFF4499 at 75.501 kb on - strand, within GFF4499 at 75.501 kb on - strand, within GFF4499 at 75.501 kb on - strand, within GFF4499 at 75.571 kb on + strand at 75.571 kb on + strand at 75.572 kb on - strand at 75.572 kb on - strand at 75.572 kb on - strand at 75.572 kb on - strand at 75.572 kb on - strand at 75.572 kb on - strand at 75.572 kb on - strand at 75.902 kb on + strand, within GFF4500 at 75.911 kb on + strand, within GFF4500 at 75.912 kb on - strand, within GFF4500 at 75.949 kb on - strand, within GFF4500 at 75.949 kb on - strand, within GFF4500 at 75.949 kb on - strand, within GFF4500 at 75.950 kb on + strand, within GFF4500 at 75.950 kb on + strand, within GFF4500 at 75.950 kb on + strand, within GFF4500 at 75.950 kb on + strand, within GFF4500 at 75.951 kb on - strand, within GFF4500 at 76.024 kb on - strand, within GFF4500 at 76.024 kb on - strand, within GFF4500 at 76.166 kb on + strand, within GFF4500 at 76.178 kb on + strand, within GFF4500 at 76.178 kb on + strand, within GFF4500 at 76.178 kb on + strand, within GFF4500 at 76.179 kb on - strand, within GFF4500 at 76.179 kb on - strand, within GFF4500 at 76.212 kb on + strand, within GFF4500 at 76.305 kb on - strand, within GFF4500 at 76.451 kb on + strand, within GFF4500 at 76.451 kb on + strand, within GFF4500 at 76.584 kb on - strand at 76.612 kb on + strand at 76.612 kb on + strand at 76.612 kb on + strand at 76.613 kb on - strand at 76.647 kb on + strand at 77.016 kb on + strand at 77.016 kb on + strand at 77.017 kb on - strand at 77.094 kb on + strand, within GFF4501 at 77.097 kb on + strand, within GFF4501 at 77.097 kb on + strand, within GFF4501 at 77.163 kb on + strand, within GFF4501 at 77.164 kb on - strand, within GFF4501 at 77.199 kb on + strand, within GFF4501 at 77.200 kb on - strand, within GFF4501 at 77.211 kb on + strand, within GFF4501 at 77.211 kb on + strand, within GFF4501 at 77.212 kb on - strand, within GFF4501 at 77.374 kb on - strand, within GFF4501 at 77.374 kb on - strand, within GFF4501 at 77.374 kb on - strand, within GFF4501 at 77.472 kb on + strand, within GFF4501 at 77.520 kb on + strand, within GFF4501 at 77.520 kb on + strand, within GFF4501 at 77.520 kb on + strand, within GFF4501 at 77.520 kb on + strand, within GFF4501 at 77.521 kb on - strand, within GFF4501 at 77.521 kb on - strand, within GFF4501
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 74,792 + +0.3 74,793 - +1.3 75,301 - GFF4499 0.62 -0.4 75,350 + GFF4499 0.67 -1.3 75,446 + GFF4499 0.77 -0.5 75,446 + GFF4499 0.77 +0.3 75,447 - GFF4499 0.77 +1.3 75,447 - GFF4499 0.77 +0.3 75,497 + GFF4499 0.82 +1.5 75,497 + GFF4499 0.82 -0.6 75,498 - GFF4499 0.83 -0.3 75,500 + GFF4499 0.83 -0.6 75,500 + GFF4499 0.83 -1.0 75,500 + GFF4499 0.83 -1.3 75,500 + GFF4499 0.83 -1.3 75,501 - GFF4499 0.83 +0.3 75,501 - GFF4499 0.83 -0.1 75,501 - GFF4499 0.83 -0.6 75,571 + +0.1 75,571 + -0.4 75,572 - +1.1 75,572 - +0.1 75,572 - +0.1 75,572 - +0.1 75,572 - +0.9 75,572 - +0.0 75,572 - -0.0 75,902 + GFF4500 0.27 -0.7 75,911 + GFF4500 0.28 -1.4 75,912 - GFF4500 0.28 -0.2 75,949 - GFF4500 0.32 -0.1 75,949 - GFF4500 0.32 -0.3 75,949 - GFF4500 0.32 -0.1 75,950 + GFF4500 0.32 -1.2 75,950 + GFF4500 0.32 -1.5 75,950 + GFF4500 0.32 +0.8 75,950 + GFF4500 0.32 -0.0 75,951 - GFF4500 0.32 +0.5 76,024 - GFF4500 0.41 +0.3 76,024 - GFF4500 0.41 -0.5 76,166 + GFF4500 0.57 -0.3 76,178 + GFF4500 0.58 -0.1 76,178 + GFF4500 0.58 -1.4 76,178 + GFF4500 0.58 -0.9 76,179 - GFF4500 0.58 +0.9 76,179 - GFF4500 0.58 +0.6 76,212 + GFF4500 0.62 -0.5 76,305 - GFF4500 0.72 -1.5 76,451 + GFF4500 0.89 -1.4 76,451 + GFF4500 0.89 +0.1 76,584 - +0.6 76,612 + -0.5 76,612 + -0.0 76,612 + -1.3 76,613 - -0.2 76,647 + -0.7 77,016 + +0.1 77,016 + -0.4 77,017 - +0.2 77,094 + GFF4501 0.13 -1.0 77,097 + GFF4501 0.13 +0.3 77,097 + GFF4501 0.13 +1.5 77,163 + GFF4501 0.22 +0.5 77,164 - GFF4501 0.22 +0.9 77,199 + GFF4501 0.27 -1.6 77,200 - GFF4501 0.27 +0.0 77,211 + GFF4501 0.28 +0.5 77,211 + GFF4501 0.28 -1.4 77,212 - GFF4501 0.28 +0.0 77,374 - GFF4501 0.50 +0.6 77,374 - GFF4501 0.50 -0.2 77,374 - GFF4501 0.50 +0.4 77,472 + GFF4501 0.62 -1.4 77,520 + GFF4501 0.69 +1.7 77,520 + GFF4501 0.69 -0.7 77,520 + GFF4501 0.69 +0.7 77,520 + GFF4501 0.69 -0.2 77,521 - GFF4501 0.69 -0.2 77,521 - GFF4501 0.69 +0.4
Or see this region's nucleotide sequence