Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4414 and GFF4415 are separated by 381 nucleotides GFF4415 and GFF4416 are separated by 148 nucleotides
GFF4414 - 2-phosphonomethylmalate synthase, at 220,805 to 222,052
GFF4414
GFF4415 - Nicotinate-nucleotide pyrophosphorylase [carboxylating], at 222,434 to 223,276
GFF4415
GFF4416 - Thiosulfate sulfurtransferase GlpE, at 223,425 to 224,222
GFF4416
Position (kb) 222
223
224 Strain fitness (log2 ratio) -1
0
1
2 at 221.440 kb on - strand, within GFF4414 at 221.440 kb on - strand, within GFF4414 at 221.697 kb on + strand, within GFF4414 at 221.698 kb on - strand, within GFF4414 at 222.068 kb on + strand at 222.079 kb on + strand at 222.079 kb on + strand at 222.079 kb on + strand at 222.079 kb on + strand at 222.080 kb on - strand at 222.080 kb on - strand at 222.080 kb on - strand at 222.215 kb on + strand at 222.327 kb on + strand at 222.327 kb on + strand at 222.327 kb on + strand at 222.328 kb on - strand at 222.328 kb on - strand at 222.328 kb on - strand at 222.330 kb on - strand at 222.330 kb on - strand at 222.481 kb on - strand at 222.481 kb on - strand at 222.966 kb on + strand, within GFF4415 at 223.163 kb on + strand, within GFF4415 at 223.163 kb on + strand, within GFF4415 at 223.163 kb on + strand, within GFF4415 at 223.270 kb on - strand at 223.302 kb on + strand at 223.316 kb on + strand at 223.316 kb on + strand at 223.317 kb on - strand at 223.317 kb on - strand at 223.453 kb on + strand at 223.597 kb on + strand, within GFF4416 at 223.597 kb on + strand, within GFF4416 at 223.597 kb on + strand, within GFF4416 at 223.598 kb on - strand, within GFF4416 at 223.598 kb on - strand, within GFF4416 at 223.598 kb on - strand, within GFF4416 at 223.598 kb on - strand, within GFF4416 at 223.598 kb on - strand, within GFF4416 at 223.598 kb on - strand, within GFF4416 at 223.598 kb on - strand, within GFF4416 at 223.598 kb on - strand, within GFF4416 at 223.936 kb on + strand, within GFF4416 at 223.937 kb on - strand, within GFF4416 at 223.993 kb on + strand, within GFF4416 at 223.994 kb on - strand, within GFF4416 at 224.018 kb on - strand, within GFF4416 at 224.023 kb on + strand, within GFF4416 at 224.023 kb on + strand, within GFF4416 at 224.023 kb on + strand, within GFF4416 at 224.023 kb on + strand, within GFF4416 at 224.023 kb on + strand, within GFF4416 at 224.024 kb on - strand, within GFF4416 at 224.024 kb on - strand, within GFF4416 at 224.024 kb on - strand, within GFF4416 at 224.024 kb on - strand, within GFF4416 at 224.024 kb on - strand, within GFF4416
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 221,440 - GFF4414 0.51 -0.0 221,440 - GFF4414 0.51 -0.5 221,697 + GFF4414 0.71 -0.3 221,698 - GFF4414 0.72 +0.1 222,068 + +0.1 222,079 + -0.2 222,079 + -0.7 222,079 + -0.1 222,079 + +0.1 222,080 - +0.3 222,080 - -0.1 222,080 - +0.0 222,215 + -0.4 222,327 + -0.9 222,327 + -0.2 222,327 + -0.8 222,328 - +0.2 222,328 - -0.2 222,328 - +0.8 222,330 - +1.6 222,330 - +0.4 222,481 - -0.9 222,481 - -0.6 222,966 + GFF4415 0.63 -0.3 223,163 + GFF4415 0.86 -1.0 223,163 + GFF4415 0.86 +1.3 223,163 + GFF4415 0.86 +1.0 223,270 - +0.6 223,302 + +0.3 223,316 + +0.9 223,316 + -0.4 223,317 - -1.1 223,317 - -0.6 223,453 + +0.1 223,597 + GFF4416 0.22 -0.4 223,597 + GFF4416 0.22 +0.3 223,597 + GFF4416 0.22 +0.0 223,598 - GFF4416 0.22 +0.3 223,598 - GFF4416 0.22 -1.0 223,598 - GFF4416 0.22 +0.3 223,598 - GFF4416 0.22 -1.6 223,598 - GFF4416 0.22 -0.5 223,598 - GFF4416 0.22 -0.3 223,598 - GFF4416 0.22 +0.0 223,598 - GFF4416 0.22 -0.1 223,936 + GFF4416 0.64 -0.6 223,937 - GFF4416 0.64 +0.3 223,993 + GFF4416 0.71 +0.1 223,994 - GFF4416 0.71 -0.2 224,018 - GFF4416 0.74 +0.4 224,023 + GFF4416 0.75 -0.4 224,023 + GFF4416 0.75 -1.1 224,023 + GFF4416 0.75 +1.9 224,023 + GFF4416 0.75 -0.1 224,023 + GFF4416 0.75 -0.4 224,024 - GFF4416 0.75 +1.4 224,024 - GFF4416 0.75 +0.2 224,024 - GFF4416 0.75 -0.1 224,024 - GFF4416 0.75 +0.9 224,024 - GFF4416 0.75 -0.9
Or see this region's nucleotide sequence