Strain Fitness in Xanthobacter sp. DMC5 around GFF44

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF42 and GFF43 are separated by 14 nucleotidesGFF43 and GFF44 are separated by 117 nucleotidesGFF44 and GFF45 are separated by 484 nucleotides GFF42 - hypothetical protein, at 51,188 to 51,856 GFF42 GFF43 - Deaminated glutathione amidase, at 51,871 to 52,677 GFF43 GFF44 - HTH-type transcriptional regulator GltR, at 52,795 to 53,715 GFF44 GFF45 - Spermidine/putrescine import ATP-binding protein PotA, at 54,200 to 55,378 GFF45 Position (kb) 52 53 54Strain fitness (log2 ratio) -2 -1 0 1at 51.845 kb on - strandat 51.926 kb on + strandat 52.000 kb on + strand, within GFF43at 52.000 kb on + strand, within GFF43at 52.001 kb on - strand, within GFF43at 52.001 kb on - strand, within GFF43at 52.001 kb on - strand, within GFF43at 52.001 kb on - strand, within GFF43at 52.001 kb on - strand, within GFF43at 52.256 kb on + strand, within GFF43at 52.257 kb on - strand, within GFF43at 52.302 kb on - strand, within GFF43at 52.398 kb on - strand, within GFF43at 52.449 kb on + strand, within GFF43at 52.450 kb on - strand, within GFF43at 52.450 kb on - strand, within GFF43at 52.481 kb on + strand, within GFF43at 52.481 kb on + strand, within GFF43at 52.481 kb on + strand, within GFF43at 52.482 kb on - strand, within GFF43at 52.551 kb on - strand, within GFF43at 52.551 kb on - strand, within GFF43at 52.554 kb on - strand, within GFF43at 52.554 kb on - strand, within GFF43at 52.741 kb on + strandat 52.769 kb on - strandat 52.769 kb on - strandat 52.796 kb on + strandat 53.231 kb on + strand, within GFF44at 53.231 kb on + strand, within GFF44at 53.231 kb on + strand, within GFF44at 53.231 kb on + strand, within GFF44at 53.232 kb on - strand, within GFF44at 53.232 kb on - strand, within GFF44at 53.232 kb on - strand, within GFF44at 53.411 kb on + strand, within GFF44at 53.412 kb on - strand, within GFF44at 53.412 kb on - strand, within GFF44at 53.428 kb on - strand, within GFF44at 53.826 kb on - strandat 53.826 kb on - strandat 53.844 kb on + strandat 53.879 kb on + strandat 53.880 kb on - strandat 53.882 kb on - strandat 54.087 kb on + strandat 54.365 kb on - strand, within GFF45at 54.368 kb on + strand, within GFF45at 54.368 kb on + strand, within GFF45at 54.368 kb on + strand, within GFF45at 54.368 kb on + strand, within GFF45at 54.369 kb on - strand, within GFF45at 54.369 kb on - strand, within GFF45at 54.369 kb on - strand, within GFF45at 54.369 kb on - strand, within GFF45

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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51,845 - -1.7
51,926 + -0.4
52,000 + GFF43 0.16 +0.4
52,000 + GFF43 0.16 -0.4
52,001 - GFF43 0.16 +0.4
52,001 - GFF43 0.16 +1.0
52,001 - GFF43 0.16 +0.1
52,001 - GFF43 0.16 +1.2
52,001 - GFF43 0.16 +1.5
52,256 + GFF43 0.48 +0.7
52,257 - GFF43 0.48 -0.2
52,302 - GFF43 0.53 +0.1
52,398 - GFF43 0.65 -1.1
52,449 + GFF43 0.72 -0.7
52,450 - GFF43 0.72 +1.5
52,450 - GFF43 0.72 -2.6
52,481 + GFF43 0.76 -0.5
52,481 + GFF43 0.76 +0.5
52,481 + GFF43 0.76 -0.5
52,482 - GFF43 0.76 -0.4
52,551 - GFF43 0.84 -0.4
52,551 - GFF43 0.84 -0.2
52,554 - GFF43 0.85 -0.3
52,554 - GFF43 0.85 +0.1
52,741 + -0.0
52,769 - -0.8
52,769 - -0.2
52,796 + -1.6
53,231 + GFF44 0.47 +0.4
53,231 + GFF44 0.47 +1.4
53,231 + GFF44 0.47 -0.3
53,231 + GFF44 0.47 +0.4
53,232 - GFF44 0.47 +0.3
53,232 - GFF44 0.47 -0.1
53,232 - GFF44 0.47 -0.7
53,411 + GFF44 0.67 -0.2
53,412 - GFF44 0.67 +0.1
53,412 - GFF44 0.67 -0.2
53,428 - GFF44 0.69 -0.0
53,826 - -0.7
53,826 - -0.8
53,844 + +0.4
53,879 + -0.1
53,880 - +0.8
53,882 - -0.1
54,087 + +1.2
54,365 - GFF45 0.14 -0.5
54,368 + GFF45 0.14 +0.6
54,368 + GFF45 0.14 +0.8
54,368 + GFF45 0.14 -0.6
54,368 + GFF45 0.14 -0.1
54,369 - GFF45 0.14 +0.4
54,369 - GFF45 0.14 -0.2
54,369 - GFF45 0.14 -0.5
54,369 - GFF45 0.14 +0.8

Or see this region's nucleotide sequence