Strain Fitness in Xanthobacter sp. DMC5 around GFF4383

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4382 and GFF4383 are separated by 52 nucleotidesGFF4383 and GFF4384 are separated by 296 nucleotides GFF4382 - Macrolide export protein MacA, at 171,509 to 172,699 GFF4382 GFF4383 - L-threonine 3-dehydrogenase, at 172,752 to 181,994 GFF4383 GFF4384 - hypothetical protein, at 182,291 to 183,769 GFF4384 Position (kb) 172 173 174 175 176 177 178 179 180 181 182Strain fitness (log2 ratio) -2 -1 0 1 2at 172.263 kb on + strand, within GFF4382at 172.263 kb on + strand, within GFF4382at 172.264 kb on - strand, within GFF4382at 172.264 kb on - strand, within GFF4382at 172.264 kb on - strand, within GFF4382at 172.268 kb on + strand, within GFF4382at 172.269 kb on - strand, within GFF4382at 172.269 kb on - strand, within GFF4382at 172.269 kb on - strand, within GFF4382at 172.269 kb on - strand, within GFF4382at 172.269 kb on - strand, within GFF4382at 172.269 kb on - strand, within GFF4382at 172.269 kb on - strand, within GFF4382at 172.581 kb on + strandat 172.581 kb on + strandat 172.581 kb on + strandat 172.581 kb on + strandat 172.582 kb on - strandat 172.582 kb on - strandat 172.717 kb on + strandat 172.717 kb on + strandat 172.717 kb on + strandat 172.718 kb on - strandat 172.736 kb on - strandat 172.736 kb on - strandat 172.943 kb on - strandat 173.077 kb on + strandat 173.155 kb on + strandat 173.156 kb on - strandat 173.545 kb on + strandat 173.546 kb on - strandat 173.546 kb on - strandat 173.560 kb on + strandat 173.617 kb on + strandat 173.780 kb on - strand, within GFF4383at 175.674 kb on + strand, within GFF4383at 175.674 kb on + strand, within GFF4383at 175.963 kb on + strand, within GFF4383at 175.963 kb on + strand, within GFF4383at 175.963 kb on + strand, within GFF4383at 175.963 kb on + strand, within GFF4383at 175.964 kb on - strand, within GFF4383at 175.967 kb on + strand, within GFF4383at 175.967 kb on + strand, within GFF4383at 175.967 kb on + strand, within GFF4383at 175.967 kb on + strand, within GFF4383at 176.095 kb on + strand, within GFF4383at 176.095 kb on + strand, within GFF4383at 176.096 kb on - strand, within GFF4383at 176.096 kb on - strand, within GFF4383at 176.096 kb on - strand, within GFF4383at 176.491 kb on + strand, within GFF4383at 176.491 kb on + strand, within GFF4383at 176.539 kb on + strand, within GFF4383at 176.816 kb on - strand, within GFF4383at 176.816 kb on - strand, within GFF4383at 177.193 kb on + strand, within GFF4383at 177.193 kb on + strand, within GFF4383at 177.194 kb on - strand, within GFF4383at 177.194 kb on - strand, within GFF4383at 177.300 kb on + strand, within GFF4383at 178.051 kb on + strand, within GFF4383at 178.051 kb on + strand, within GFF4383at 178.052 kb on - strand, within GFF4383at 178.052 kb on - strand, within GFF4383at 178.276 kb on + strand, within GFF4383at 178.277 kb on - strand, within GFF4383at 178.277 kb on - strand, within GFF4383at 178.393 kb on + strand, within GFF4383at 178.502 kb on - strand, within GFF4383at 178.755 kb on + strand, within GFF4383at 178.843 kb on + strand, within GFF4383at 178.843 kb on + strand, within GFF4383at 178.844 kb on - strand, within GFF4383at 178.924 kb on + strand, within GFF4383at 178.924 kb on + strand, within GFF4383at 178.924 kb on + strand, within GFF4383at 178.925 kb on - strand, within GFF4383at 179.050 kb on + strand, within GFF4383at 179.101 kb on + strand, within GFF4383at 179.101 kb on + strand, within GFF4383at 179.342 kb on - strand, within GFF4383at 179.342 kb on - strand, within GFF4383at 179.563 kb on + strand, within GFF4383at 179.564 kb on - strand, within GFF4383at 179.815 kb on + strand, within GFF4383at 179.815 kb on + strand, within GFF4383at 179.815 kb on + strand, within GFF4383at 179.816 kb on - strand, within GFF4383at 179.816 kb on - strand, within GFF4383at 179.935 kb on + strand, within GFF4383at 179.935 kb on + strand, within GFF4383at 179.935 kb on + strand, within GFF4383at 179.936 kb on - strand, within GFF4383at 179.936 kb on - strand, within GFF4383at 179.980 kb on + strand, within GFF4383at 179.980 kb on + strand, within GFF4383at 179.981 kb on - strand, within GFF4383at 179.981 kb on - strand, within GFF4383at 180.105 kb on + strand, within GFF4383at 180.313 kb on + strand, within GFF4383at 180.313 kb on + strand, within GFF4383at 180.313 kb on + strand, within GFF4383at 180.313 kb on + strand, within GFF4383at 180.313 kb on + strand, within GFF4383at 180.314 kb on - strand, within GFF4383at 180.314 kb on - strand, within GFF4383at 180.472 kb on + strand, within GFF4383at 180.472 kb on + strand, within GFF4383at 180.472 kb on + strand, within GFF4383at 180.473 kb on - strand, within GFF4383at 180.473 kb on - strand, within GFF4383at 180.722 kb on - strand, within GFF4383at 181.003 kb on + strand, within GFF4383at 181.004 kb on - strand, within GFF4383at 181.004 kb on - strand, within GFF4383at 181.138 kb on + strandat 181.138 kb on + strandat 181.138 kb on + strandat 181.139 kb on - strandat 181.139 kb on - strandat 181.240 kb on + strandat 181.240 kb on + strandat 181.240 kb on + strandat 181.241 kb on - strandat 181.241 kb on - strandat 181.241 kb on - strandat 181.526 kb on - strandat 181.741 kb on + strandat 181.777 kb on + strandat 181.778 kb on - strandat 182.042 kb on - strandat 182.086 kb on - strandat 182.169 kb on + strandat 182.303 kb on + strandat 182.490 kb on + strand, within GFF4384at 182.843 kb on - strand, within GFF4384at 182.862 kb on + strand, within GFF4384at 182.868 kb on + strand, within GFF4384

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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172,263 + GFF4382 0.63 +0.2
172,263 + GFF4382 0.63 +0.1
172,264 - GFF4382 0.63 +0.9
172,264 - GFF4382 0.63 -0.5
172,264 - GFF4382 0.63 -0.4
172,268 + GFF4382 0.64 +1.8
172,269 - GFF4382 0.64 +0.8
172,269 - GFF4382 0.64 -0.4
172,269 - GFF4382 0.64 -0.0
172,269 - GFF4382 0.64 -0.9
172,269 - GFF4382 0.64 -1.2
172,269 - GFF4382 0.64 +0.1
172,269 - GFF4382 0.64 +0.3
172,581 + -0.2
172,581 + -0.4
172,581 + -1.2
172,581 + -0.3
172,582 - +0.8
172,582 - -0.1
172,717 + -0.3
172,717 + -0.8
172,717 + -1.5
172,718 - -1.1
172,736 - -0.0
172,736 - +0.1
172,943 - +0.4
173,077 + -1.5
173,155 + -0.6
173,156 - +0.5
173,545 + -0.7
173,546 - -0.5
173,546 - +1.3
173,560 + -0.9
173,617 + -0.2
173,780 - GFF4383 0.11 -0.7
175,674 + GFF4383 0.32 +0.0
175,674 + GFF4383 0.32 +0.6
175,963 + GFF4383 0.35 -0.3
175,963 + GFF4383 0.35 +0.0
175,963 + GFF4383 0.35 +0.7
175,963 + GFF4383 0.35 -1.2
175,964 - GFF4383 0.35 -0.7
175,967 + GFF4383 0.35 -0.3
175,967 + GFF4383 0.35 -0.8
175,967 + GFF4383 0.35 +0.2
175,967 + GFF4383 0.35 -1.1
176,095 + GFF4383 0.36 +0.6
176,095 + GFF4383 0.36 -0.7
176,096 - GFF4383 0.36 -0.7
176,096 - GFF4383 0.36 +0.2
176,096 - GFF4383 0.36 -0.3
176,491 + GFF4383 0.40 -0.4
176,491 + GFF4383 0.40 -0.2
176,539 + GFF4383 0.41 -1.2
176,816 - GFF4383 0.44 +0.6
176,816 - GFF4383 0.44 +0.3
177,193 + GFF4383 0.48 -1.1
177,193 + GFF4383 0.48 -0.2
177,194 - GFF4383 0.48 +1.0
177,194 - GFF4383 0.48 +0.0
177,300 + GFF4383 0.49 -0.8
178,051 + GFF4383 0.57 -1.1
178,051 + GFF4383 0.57 +0.0
178,052 - GFF4383 0.57 +0.4
178,052 - GFF4383 0.57 -0.6
178,276 + GFF4383 0.60 +0.2
178,277 - GFF4383 0.60 -1.4
178,277 - GFF4383 0.60 +0.0
178,393 + GFF4383 0.61 -1.3
178,502 - GFF4383 0.62 +0.4
178,755 + GFF4383 0.65 -0.3
178,843 + GFF4383 0.66 +0.0
178,843 + GFF4383 0.66 -0.1
178,844 - GFF4383 0.66 -0.2
178,924 + GFF4383 0.67 -1.7
178,924 + GFF4383 0.67 -0.4
178,924 + GFF4383 0.67 -0.3
178,925 - GFF4383 0.67 +1.0
179,050 + GFF4383 0.68 -0.6
179,101 + GFF4383 0.69 -0.7
179,101 + GFF4383 0.69 +0.4
179,342 - GFF4383 0.71 -1.0
179,342 - GFF4383 0.71 +0.0
179,563 + GFF4383 0.74 -0.6
179,564 - GFF4383 0.74 -0.3
179,815 + GFF4383 0.76 -0.1
179,815 + GFF4383 0.76 +0.0
179,815 + GFF4383 0.76 -0.2
179,816 - GFF4383 0.76 -1.5
179,816 - GFF4383 0.76 -0.1
179,935 + GFF4383 0.78 +0.5
179,935 + GFF4383 0.78 -0.1
179,935 + GFF4383 0.78 -1.3
179,936 - GFF4383 0.78 -0.8
179,936 - GFF4383 0.78 +0.7
179,980 + GFF4383 0.78 -0.3
179,980 + GFF4383 0.78 -1.1
179,981 - GFF4383 0.78 +0.5
179,981 - GFF4383 0.78 +0.1
180,105 + GFF4383 0.80 +0.6
180,313 + GFF4383 0.82 -0.6
180,313 + GFF4383 0.82 +0.2
180,313 + GFF4383 0.82 -0.2
180,313 + GFF4383 0.82 -0.4
180,313 + GFF4383 0.82 -0.3
180,314 - GFF4383 0.82 +0.4
180,314 - GFF4383 0.82 +0.2
180,472 + GFF4383 0.84 +0.3
180,472 + GFF4383 0.84 -0.8
180,472 + GFF4383 0.84 -0.3
180,473 - GFF4383 0.84 -0.0
180,473 - GFF4383 0.84 +1.9
180,722 - GFF4383 0.86 +0.1
181,003 + GFF4383 0.89 -0.3
181,004 - GFF4383 0.89 +0.2
181,004 - GFF4383 0.89 -0.6
181,138 + +0.3
181,138 + -1.0
181,138 + -0.6
181,139 - +0.8
181,139 - +1.0
181,240 + -1.3
181,240 + +0.9
181,240 + +1.2
181,241 - -0.4
181,241 - -1.5
181,241 - +0.4
181,526 - -0.5
181,741 + +0.4
181,777 + -0.8
181,778 - +1.0
182,042 - +0.6
182,086 - +0.2
182,169 + +0.9
182,303 + -0.8
182,490 + GFF4384 0.13 -1.4
182,843 - GFF4384 0.37 +0.2
182,862 + GFF4384 0.39 -0.7
182,868 + GFF4384 0.39 -2.1

Or see this region's nucleotide sequence