Strain Fitness in Xanthobacter sp. DMC5 around GFF4334

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4332 and GFF4333 are separated by 14 nucleotidesGFF4333 and GFF4334 overlap by 4 nucleotidesGFF4334 and GFF4335 are separated by 206 nucleotides GFF4332 - Biotin transporter BioY, at 115,803 to 116,378 GFF4332 GFF4333 - Energy-coupling factor transporter transmembrane protein BioN, at 116,393 to 117,025 GFF4333 GFF4334 - Biotin transport ATP-binding protein BioM, at 117,022 to 117,792 GFF4334 GFF4335 - L-arabonate dehydratase, at 117,999 to 119,849 GFF4335 Position (kb) 117 118Strain fitness (log2 ratio) -2 -1 0 1at 117.013 kb on - strandat 117.912 kb on - strandat 117.935 kb on - strandat 118.131 kb on + strandat 118.371 kb on + strand, within GFF4335at 118.602 kb on + strand, within GFF4335at 118.744 kb on - strand, within GFF4335

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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117,013 - -2.1
117,912 - -0.8
117,935 - -0.1
118,131 + -0.2
118,371 + GFF4335 0.20 -0.4
118,602 + GFF4335 0.33 -0.1
118,744 - GFF4335 0.40 +0.0

Or see this region's nucleotide sequence