Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF431 and GFF432 are separated by 6 nucleotides GFF432 and GFF433 are separated by 229 nucleotides
GFF431 - Sialic acid TRAP transporter large permease protein SiaM, at 453,932 to 455,338
GFF431
GFF432 - hypothetical protein, at 455,345 to 455,752
GFF432
GFF433 - Lycopene beta-cyclase, at 455,982 to 457,139
GFF433
Position (kb) 455
456 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 454.424 kb on + strand, within GFF431 at 454.682 kb on + strand, within GFF431 at 454.682 kb on + strand, within GFF431 at 455.285 kb on + strand at 455.286 kb on - strand at 455.286 kb on - strand at 455.286 kb on - strand at 455.409 kb on + strand, within GFF432 at 455.409 kb on + strand, within GFF432 at 455.409 kb on + strand, within GFF432 at 455.410 kb on - strand, within GFF432 at 455.410 kb on - strand, within GFF432 at 455.410 kb on - strand, within GFF432 at 455.410 kb on - strand, within GFF432 at 455.412 kb on + strand, within GFF432 at 455.412 kb on + strand, within GFF432 at 455.413 kb on - strand, within GFF432 at 455.413 kb on - strand, within GFF432 at 455.413 kb on - strand, within GFF432 at 455.415 kb on + strand, within GFF432 at 455.415 kb on + strand, within GFF432 at 455.841 kb on + strand at 455.841 kb on + strand at 455.842 kb on - strand at 455.842 kb on - strand at 455.842 kb on - strand at 455.842 kb on - strand at 455.987 kb on + strand at 455.988 kb on - strand at 456.207 kb on + strand, within GFF433 at 456.232 kb on - strand, within GFF433 at 456.232 kb on - strand, within GFF433 at 456.528 kb on + strand, within GFF433 at 456.528 kb on + strand, within GFF433 at 456.528 kb on + strand, within GFF433 at 456.529 kb on - strand, within GFF433 at 456.529 kb on - strand, within GFF433 at 456.574 kb on - strand, within GFF433 at 456.574 kb on - strand, within GFF433 at 456.574 kb on - strand, within GFF433 at 456.577 kb on - strand, within GFF433 at 456.577 kb on - strand, within GFF433
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 454,424 + GFF431 0.35 -0.0 454,682 + GFF431 0.53 -0.9 454,682 + GFF431 0.53 +0.0 455,285 + +0.2 455,286 - -1.2 455,286 - +1.3 455,286 - +0.2 455,409 + GFF432 0.16 +0.0 455,409 + GFF432 0.16 -0.9 455,409 + GFF432 0.16 -1.0 455,410 - GFF432 0.16 +0.0 455,410 - GFF432 0.16 -0.3 455,410 - GFF432 0.16 +0.0 455,410 - GFF432 0.16 +0.6 455,412 + GFF432 0.16 -0.3 455,412 + GFF432 0.16 -0.6 455,413 - GFF432 0.17 -0.1 455,413 - GFF432 0.17 +0.6 455,413 - GFF432 0.17 -2.8 455,415 + GFF432 0.17 -0.1 455,415 + GFF432 0.17 -0.1 455,841 + +0.8 455,841 + -0.7 455,842 - -0.3 455,842 - +0.6 455,842 - -0.6 455,842 - -0.2 455,987 + +0.7 455,988 - -1.2 456,207 + GFF433 0.19 -0.2 456,232 - GFF433 0.22 +0.2 456,232 - GFF433 0.22 -0.1 456,528 + GFF433 0.47 -1.5 456,528 + GFF433 0.47 -1.7 456,528 + GFF433 0.47 -0.6 456,529 - GFF433 0.47 -0.7 456,529 - GFF433 0.47 -0.3 456,574 - GFF433 0.51 +0.5 456,574 - GFF433 0.51 +0.0 456,574 - GFF433 0.51 -0.8 456,577 - GFF433 0.51 +0.4 456,577 - GFF433 0.51 +0.0
Or see this region's nucleotide sequence