Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF429 and GFF430 are separated by 222 nucleotides GFF430 and GFF431 are separated by 3 nucleotides GFF431 and GFF432 are separated by 6 nucleotides GFF432 and GFF433 are separated by 229 nucleotides
GFF429 - Sialic acid-binding periplasmic protein SiaP, at 452,135 to 453,124
GFF429
GFF430 - hypothetical protein, at 453,347 to 453,928
GFF430
GFF431 - Sialic acid TRAP transporter large permease protein SiaM, at 453,932 to 455,338
GFF431
GFF432 - hypothetical protein, at 455,345 to 455,752
GFF432
GFF433 - Lycopene beta-cyclase, at 455,982 to 457,139
GFF433
Position (kb) 453
454
455
456 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 453.168 kb on + strand at 453.168 kb on + strand at 453.169 kb on - strand at 453.169 kb on - strand at 453.169 kb on - strand at 453.394 kb on + strand at 453.394 kb on + strand at 453.395 kb on - strand at 453.395 kb on - strand at 453.395 kb on - strand at 453.554 kb on + strand, within GFF430 at 453.554 kb on + strand, within GFF430 at 453.554 kb on + strand, within GFF430 at 453.554 kb on + strand, within GFF430 at 453.555 kb on - strand, within GFF430 at 453.555 kb on - strand, within GFF430 at 453.555 kb on - strand, within GFF430 at 453.555 kb on - strand, within GFF430 at 453.621 kb on + strand, within GFF430 at 453.622 kb on - strand, within GFF430 at 453.622 kb on - strand, within GFF430 at 453.622 kb on - strand, within GFF430 at 453.707 kb on + strand, within GFF430 at 453.794 kb on + strand, within GFF430 at 453.795 kb on - strand, within GFF430 at 453.908 kb on + strand at 453.908 kb on + strand at 454.017 kb on - strand at 454.160 kb on + strand, within GFF431 at 454.316 kb on + strand, within GFF431 at 454.317 kb on - strand, within GFF431 at 454.424 kb on + strand, within GFF431 at 454.682 kb on + strand, within GFF431 at 454.682 kb on + strand, within GFF431 at 455.285 kb on + strand at 455.286 kb on - strand at 455.286 kb on - strand at 455.286 kb on - strand at 455.409 kb on + strand, within GFF432 at 455.409 kb on + strand, within GFF432 at 455.409 kb on + strand, within GFF432 at 455.410 kb on - strand, within GFF432 at 455.410 kb on - strand, within GFF432 at 455.410 kb on - strand, within GFF432 at 455.410 kb on - strand, within GFF432 at 455.412 kb on + strand, within GFF432 at 455.412 kb on + strand, within GFF432 at 455.413 kb on - strand, within GFF432 at 455.413 kb on - strand, within GFF432 at 455.413 kb on - strand, within GFF432 at 455.415 kb on + strand, within GFF432 at 455.415 kb on + strand, within GFF432 at 455.841 kb on + strand at 455.841 kb on + strand at 455.842 kb on - strand at 455.842 kb on - strand at 455.842 kb on - strand at 455.842 kb on - strand at 455.987 kb on + strand at 455.988 kb on - strand at 456.207 kb on + strand, within GFF433 at 456.232 kb on - strand, within GFF433 at 456.232 kb on - strand, within GFF433
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 453,168 + -0.5 453,168 + +0.0 453,169 - +0.2 453,169 - +0.5 453,169 - -0.3 453,394 + +1.0 453,394 + +0.4 453,395 - -0.2 453,395 - -0.1 453,395 - -0.6 453,554 + GFF430 0.36 -1.6 453,554 + GFF430 0.36 +0.4 453,554 + GFF430 0.36 +1.3 453,554 + GFF430 0.36 -0.1 453,555 - GFF430 0.36 +0.8 453,555 - GFF430 0.36 -0.9 453,555 - GFF430 0.36 -0.3 453,555 - GFF430 0.36 +0.4 453,621 + GFF430 0.47 -0.4 453,622 - GFF430 0.47 -0.7 453,622 - GFF430 0.47 +1.2 453,622 - GFF430 0.47 -0.1 453,707 + GFF430 0.62 -0.8 453,794 + GFF430 0.77 -0.4 453,795 - GFF430 0.77 +1.8 453,908 + +0.4 453,908 + +0.2 454,017 - -0.6 454,160 + GFF431 0.16 +0.1 454,316 + GFF431 0.27 +0.3 454,317 - GFF431 0.27 +0.1 454,424 + GFF431 0.35 -0.0 454,682 + GFF431 0.53 -0.9 454,682 + GFF431 0.53 +0.0 455,285 + +0.2 455,286 - -1.2 455,286 - +1.3 455,286 - +0.2 455,409 + GFF432 0.16 +0.0 455,409 + GFF432 0.16 -0.9 455,409 + GFF432 0.16 -1.0 455,410 - GFF432 0.16 +0.0 455,410 - GFF432 0.16 -0.3 455,410 - GFF432 0.16 +0.0 455,410 - GFF432 0.16 +0.6 455,412 + GFF432 0.16 -0.3 455,412 + GFF432 0.16 -0.6 455,413 - GFF432 0.17 -0.1 455,413 - GFF432 0.17 +0.6 455,413 - GFF432 0.17 -2.8 455,415 + GFF432 0.17 -0.1 455,415 + GFF432 0.17 -0.1 455,841 + +0.8 455,841 + -0.7 455,842 - -0.3 455,842 - +0.6 455,842 - -0.6 455,842 - -0.2 455,987 + +0.7 455,988 - -1.2 456,207 + GFF433 0.19 -0.2 456,232 - GFF433 0.22 +0.2 456,232 - GFF433 0.22 -0.1
Or see this region's nucleotide sequence