Strain Fitness in Xanthobacter sp. DMC5 around GFF4238

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4237 and GFF4238 are separated by 20 nucleotidesGFF4238 and GFF4239 are separated by 377 nucleotides GFF4237 - hypothetical protein, at 9,127 to 10,140 GFF4237 GFF4238 - Alkanesulfonate monooxygenase, at 10,161 to 11,330 GFF4238 GFF4239 - hypothetical protein, at 11,708 to 13,072 GFF4239 Position (kb) 10 11 12Strain fitness (log2 ratio) -2 -1 0 1at 9.254 kb on + strand, within GFF4237at 9.254 kb on + strand, within GFF4237at 9.255 kb on - strand, within GFF4237at 9.256 kb on - strand, within GFF4237at 9.326 kb on + strand, within GFF4237at 9.326 kb on + strand, within GFF4237at 9.327 kb on - strand, within GFF4237at 9.401 kb on + strand, within GFF4237at 9.401 kb on + strand, within GFF4237at 9.402 kb on - strand, within GFF4237at 9.402 kb on - strand, within GFF4237at 9.402 kb on - strand, within GFF4237at 9.402 kb on - strand, within GFF4237at 9.479 kb on + strand, within GFF4237at 9.479 kb on + strand, within GFF4237at 9.479 kb on + strand, within GFF4237at 9.480 kb on - strand, within GFF4237at 9.480 kb on - strand, within GFF4237at 9.548 kb on + strand, within GFF4237at 9.692 kb on + strand, within GFF4237at 9.750 kb on + strand, within GFF4237at 9.776 kb on + strand, within GFF4237at 9.776 kb on + strand, within GFF4237at 9.777 kb on - strand, within GFF4237at 9.777 kb on - strand, within GFF4237at 9.885 kb on + strand, within GFF4237at 9.886 kb on - strand, within GFF4237at 10.020 kb on - strand, within GFF4237at 10.020 kb on - strand, within GFF4237at 10.291 kb on + strand, within GFF4238at 10.352 kb on - strand, within GFF4238at 10.522 kb on + strand, within GFF4238at 10.571 kb on + strand, within GFF4238at 10.571 kb on + strand, within GFF4238at 10.571 kb on + strand, within GFF4238at 10.571 kb on + strand, within GFF4238at 10.571 kb on + strand, within GFF4238at 10.629 kb on - strand, within GFF4238at 10.729 kb on + strand, within GFF4238at 10.729 kb on + strand, within GFF4238at 10.729 kb on + strand, within GFF4238at 10.729 kb on + strand, within GFF4238at 10.729 kb on + strand, within GFF4238at 10.846 kb on + strand, within GFF4238at 10.847 kb on - strand, within GFF4238at 10.850 kb on - strand, within GFF4238at 10.850 kb on - strand, within GFF4238at 10.924 kb on + strand, within GFF4238at 10.924 kb on + strand, within GFF4238at 10.924 kb on + strand, within GFF4238at 10.925 kb on - strand, within GFF4238at 11.261 kb on - strandat 11.581 kb on + strandat 11.582 kb on - strandat 11.848 kb on + strand, within GFF4239at 12.011 kb on + strand, within GFF4239at 12.012 kb on - strand, within GFF4239at 12.039 kb on - strand, within GFF4239at 12.039 kb on - strand, within GFF4239at 12.065 kb on + strand, within GFF4239at 12.066 kb on - strand, within GFF4239at 12.092 kb on + strand, within GFF4239at 12.092 kb on + strand, within GFF4239at 12.093 kb on - strand, within GFF4239at 12.107 kb on - strand, within GFF4239at 12.317 kb on + strand, within GFF4239at 12.317 kb on + strand, within GFF4239at 12.317 kb on + strand, within GFF4239

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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9,254 + GFF4237 0.13 -1.6
9,254 + GFF4237 0.13 -0.2
9,255 - GFF4237 0.13 -0.2
9,256 - GFF4237 0.13 +0.1
9,326 + GFF4237 0.20 -1.0
9,326 + GFF4237 0.20 +1.2
9,327 - GFF4237 0.20 -0.3
9,401 + GFF4237 0.27 +0.7
9,401 + GFF4237 0.27 -0.3
9,402 - GFF4237 0.27 +1.1
9,402 - GFF4237 0.27 -1.6
9,402 - GFF4237 0.27 +0.9
9,402 - GFF4237 0.27 +0.3
9,479 + GFF4237 0.35 -0.2
9,479 + GFF4237 0.35 +0.6
9,479 + GFF4237 0.35 -1.3
9,480 - GFF4237 0.35 -1.3
9,480 - GFF4237 0.35 -0.1
9,548 + GFF4237 0.42 +0.6
9,692 + GFF4237 0.56 -0.8
9,750 + GFF4237 0.61 -1.0
9,776 + GFF4237 0.64 +0.3
9,776 + GFF4237 0.64 +1.1
9,777 - GFF4237 0.64 -0.1
9,777 - GFF4237 0.64 +0.7
9,885 + GFF4237 0.75 +1.5
9,886 - GFF4237 0.75 -0.6
10,020 - GFF4237 0.88 +0.9
10,020 - GFF4237 0.88 -0.9
10,291 + GFF4238 0.11 -0.7
10,352 - GFF4238 0.16 -1.3
10,522 + GFF4238 0.31 -0.1
10,571 + GFF4238 0.35 +0.2
10,571 + GFF4238 0.35 +1.1
10,571 + GFF4238 0.35 -1.1
10,571 + GFF4238 0.35 +0.7
10,571 + GFF4238 0.35 +0.9
10,629 - GFF4238 0.40 -0.1
10,729 + GFF4238 0.49 +0.9
10,729 + GFF4238 0.49 -0.6
10,729 + GFF4238 0.49 -0.5
10,729 + GFF4238 0.49 +1.0
10,729 + GFF4238 0.49 +0.0
10,846 + GFF4238 0.59 -1.3
10,847 - GFF4238 0.59 +0.0
10,850 - GFF4238 0.59 +1.7
10,850 - GFF4238 0.59 +0.3
10,924 + GFF4238 0.65 +0.4
10,924 + GFF4238 0.65 -1.1
10,924 + GFF4238 0.65 -0.6
10,925 - GFF4238 0.65 -0.5
11,261 - -1.3
11,581 + +0.6
11,582 - +0.4
11,848 + GFF4239 0.10 -2.3
12,011 + GFF4239 0.22 +0.0
12,012 - GFF4239 0.22 -0.5
12,039 - GFF4239 0.24 +0.3
12,039 - GFF4239 0.24 +0.6
12,065 + GFF4239 0.26 +1.0
12,066 - GFF4239 0.26 -0.1
12,092 + GFF4239 0.28 +1.4
12,092 + GFF4239 0.28 -1.7
12,093 - GFF4239 0.28 -1.4
12,107 - GFF4239 0.29 -0.1
12,317 + GFF4239 0.45 +0.4
12,317 + GFF4239 0.45 +1.1
12,317 + GFF4239 0.45 -0.1

Or see this region's nucleotide sequence