Strain Fitness in Xanthobacter sp. DMC5 around GFF4237

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4235 and GFF4236 are separated by 87 nucleotidesGFF4236 and GFF4237 are separated by 10 nucleotidesGFF4237 and GFF4238 are separated by 20 nucleotides GFF4235 - hypothetical protein, at 7,830 to 8,207 GFF4235 GFF4236 - Nitrate import ATP-binding protein NrtD, at 8,295 to 9,116 GFF4236 GFF4237 - hypothetical protein, at 9,127 to 10,140 GFF4237 GFF4238 - Alkanesulfonate monooxygenase, at 10,161 to 11,330 GFF4238 Position (kb) 9 10 11Strain fitness (log2 ratio) -1 0 1at 8.175 kb on + strandat 8.175 kb on + strandat 8.175 kb on + strandat 8.176 kb on - strandat 8.199 kb on + strandat 8.200 kb on - strandat 8.200 kb on - strandat 8.397 kb on - strand, within GFF4236at 8.673 kb on + strand, within GFF4236at 9.025 kb on + strand, within GFF4236at 9.025 kb on + strand, within GFF4236at 9.025 kb on + strand, within GFF4236at 9.026 kb on - strand, within GFF4236at 9.026 kb on - strand, within GFF4236at 9.254 kb on + strand, within GFF4237at 9.254 kb on + strand, within GFF4237at 9.255 kb on - strand, within GFF4237at 9.256 kb on - strand, within GFF4237at 9.326 kb on + strand, within GFF4237at 9.326 kb on + strand, within GFF4237at 9.327 kb on - strand, within GFF4237at 9.401 kb on + strand, within GFF4237at 9.401 kb on + strand, within GFF4237at 9.402 kb on - strand, within GFF4237at 9.402 kb on - strand, within GFF4237at 9.402 kb on - strand, within GFF4237at 9.402 kb on - strand, within GFF4237at 9.479 kb on + strand, within GFF4237at 9.479 kb on + strand, within GFF4237at 9.479 kb on + strand, within GFF4237at 9.480 kb on - strand, within GFF4237at 9.480 kb on - strand, within GFF4237at 9.548 kb on + strand, within GFF4237at 9.692 kb on + strand, within GFF4237at 9.750 kb on + strand, within GFF4237at 9.776 kb on + strand, within GFF4237at 9.776 kb on + strand, within GFF4237at 9.777 kb on - strand, within GFF4237at 9.777 kb on - strand, within GFF4237at 9.885 kb on + strand, within GFF4237at 9.886 kb on - strand, within GFF4237at 10.020 kb on - strand, within GFF4237at 10.020 kb on - strand, within GFF4237at 10.291 kb on + strand, within GFF4238at 10.352 kb on - strand, within GFF4238at 10.522 kb on + strand, within GFF4238at 10.571 kb on + strand, within GFF4238at 10.571 kb on + strand, within GFF4238at 10.571 kb on + strand, within GFF4238at 10.571 kb on + strand, within GFF4238at 10.571 kb on + strand, within GFF4238at 10.629 kb on - strand, within GFF4238at 10.729 kb on + strand, within GFF4238at 10.729 kb on + strand, within GFF4238at 10.729 kb on + strand, within GFF4238at 10.729 kb on + strand, within GFF4238at 10.729 kb on + strand, within GFF4238at 10.846 kb on + strand, within GFF4238at 10.847 kb on - strand, within GFF4238at 10.850 kb on - strand, within GFF4238at 10.850 kb on - strand, within GFF4238at 10.924 kb on + strand, within GFF4238at 10.924 kb on + strand, within GFF4238at 10.924 kb on + strand, within GFF4238at 10.925 kb on - strand, within GFF4238

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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8,175 + -0.3
8,175 + +0.3
8,175 + -1.0
8,176 - -1.3
8,199 + -0.4
8,200 - -0.0
8,200 - +0.3
8,397 - GFF4236 0.12 -0.4
8,673 + GFF4236 0.46 -0.6
9,025 + GFF4236 0.89 +0.1
9,025 + GFF4236 0.89 -0.1
9,025 + GFF4236 0.89 -0.4
9,026 - GFF4236 0.89 -0.6
9,026 - GFF4236 0.89 +0.1
9,254 + GFF4237 0.13 -1.6
9,254 + GFF4237 0.13 -0.2
9,255 - GFF4237 0.13 -0.2
9,256 - GFF4237 0.13 +0.1
9,326 + GFF4237 0.20 -1.0
9,326 + GFF4237 0.20 +1.2
9,327 - GFF4237 0.20 -0.3
9,401 + GFF4237 0.27 +0.7
9,401 + GFF4237 0.27 -0.3
9,402 - GFF4237 0.27 +1.1
9,402 - GFF4237 0.27 -1.6
9,402 - GFF4237 0.27 +0.9
9,402 - GFF4237 0.27 +0.3
9,479 + GFF4237 0.35 -0.2
9,479 + GFF4237 0.35 +0.6
9,479 + GFF4237 0.35 -1.3
9,480 - GFF4237 0.35 -1.3
9,480 - GFF4237 0.35 -0.1
9,548 + GFF4237 0.42 +0.6
9,692 + GFF4237 0.56 -0.8
9,750 + GFF4237 0.61 -1.0
9,776 + GFF4237 0.64 +0.3
9,776 + GFF4237 0.64 +1.1
9,777 - GFF4237 0.64 -0.1
9,777 - GFF4237 0.64 +0.7
9,885 + GFF4237 0.75 +1.5
9,886 - GFF4237 0.75 -0.6
10,020 - GFF4237 0.88 +0.9
10,020 - GFF4237 0.88 -0.9
10,291 + GFF4238 0.11 -0.7
10,352 - GFF4238 0.16 -1.3
10,522 + GFF4238 0.31 -0.1
10,571 + GFF4238 0.35 +0.2
10,571 + GFF4238 0.35 +1.1
10,571 + GFF4238 0.35 -1.1
10,571 + GFF4238 0.35 +0.7
10,571 + GFF4238 0.35 +0.9
10,629 - GFF4238 0.40 -0.1
10,729 + GFF4238 0.49 +0.9
10,729 + GFF4238 0.49 -0.6
10,729 + GFF4238 0.49 -0.5
10,729 + GFF4238 0.49 +1.0
10,729 + GFF4238 0.49 +0.0
10,846 + GFF4238 0.59 -1.3
10,847 - GFF4238 0.59 +0.0
10,850 - GFF4238 0.59 +1.7
10,850 - GFF4238 0.59 +0.3
10,924 + GFF4238 0.65 +0.4
10,924 + GFF4238 0.65 -1.1
10,924 + GFF4238 0.65 -0.6
10,925 - GFF4238 0.65 -0.5

Or see this region's nucleotide sequence